cluster # 9311

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9311 cluster # 9311 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9311#0 length = 789 sequences # 3
consensus_9311#1 length = 475 sequences # 1

consensus_9311#2 length = 397 sequences # 1
consensus_9311#3 length = 300 sequences # 1

consensusID : consensus_9311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 789
fasta sequence

                              [ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCACCTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGGCGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGGATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGCGGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTGCAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCCCCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTCGAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGCCGCCGCCGCCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACAT--ATG---ACAATTTTATGAGAAATTTTTTTAGTATAAAAAAAAAAGG]

[+] EMBL AK068443             [ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCACCTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGGCGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGGATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGCGGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTGCAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCCCCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTCGAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGCCGCCGCCGCCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACGT  ATG   ACAA                                    ]
[+] EMBL AU029920             [                                                                                                                                                                                                                                                                                                                                                                                      cgCCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTCGAGCTCTATCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGTCNCCTCC CCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACAT  ATGACAACAATTTTATGAGAAATTTTTTTAGTATAAAAAAAA    ]
[-] EMBL CB681583             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACATAAAGG   ACAATTTTATGAGAAATTTTTTTAGTATAAAACAAAAAGG]




>consensus_9311#0
ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCAC
CTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGG
CGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGG
ATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGC
GGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTG
CAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCC
CCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTC
GAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCG
CCGCCGCCGCCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTT
GCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTT
TCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGC
GAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGG
CATTGCCCCATGTACTATGACAACATATGACAATTTTATGAGAAATTTTTTTAGTATAAA
AAAAAAAGG

consensusID : consensus_9311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [GTCTGCAACCACAACTTGCTTGGGCCTAGCAGCCAGGGCGGCAATGTGCTGTGCGGCAGACCCACCTGCGGAGCTGCCAAGCTGCGCTAGCAACGCCTTGGCTGCAAACCGCCTGCTGCACAGGCCACCCAGGTGTAGCCAACCGCCTAGCACAGCACAGCACAGCACGCGGCGTGACTGAATGTGACTAAAGCTGACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCCAACGATAGCGTGCAGATTGCAACGGAAGAACATATTCAAGATGTCCCTTCTTTGTTTTCTTTCGTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTGACAAGATTATTGGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCAGGCATTGCCCCATGTACTATGACAACATAGCCCACAATTTTATGAGAAATTTTTTTAGTATAAAAA]

[+] EMBL BI797266             [GTCTGCAACCACAACTTGCTTGGGCCTAGCAGCCAGGGCGGCAATGTGCTGTGCGGCAGACCCACCTGCGGAGCTGCCAAGCTGCGCTAGCAACGCCTTGGCTGCAAACCGCCTGCTGCACAGGCCACCCAGGTGTAGCCAACCGCCTAGCACAGCACAGCACAGCACGCGGCGTGACTGAATGTGACTAAAGCTGACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCCAACGATAGCGTGCAGATTGCAACGGAAGAACATATTCAAGATGTCCCTTCTTTGTTTTCTTTCGTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTGACAAGATTATTGGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCAGGCATTGCCCCATGTACTATGACAACATAGCCCACAATTTTATGAGAAATTTTTTTAGTATAAAAA]




>consensus_9311#1
GTCTGCAACCACAACTTGCTTGGGCCTAGCAGCCAGGGCGGCAATGTGCTGTGCGGCAGA
CCCACCTGCGGAGCTGCCAAGCTGCGCTAGCAACGCCTTGGCTGCAAACCGCCTGCTGCA
CAGGCCACCCAGGTGTAGCCAACCGCCTAGCACAGCACAGCACAGCACGCGGCGTGACTG
AATGTGACTAAAGCTGACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCCAAC
GATAGCGTGCAGATTGCAACGGAAGAACATATTCAAGATGTCCCTTCTTTGTTTTCTTTC
GTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTGACAAGATTATTGGGTTGCGAATTTGC
AATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCAGGCATTGCCCC
ATGTACTATGACAACATAGCCCACAATTTTATGAGAAATTTTTTTAGTATAAAAA

consensusID : consensus_9311#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [GCTCCCCGCGGGGCTCTGCACCCACTTTTGCCTCGCCATGGGCTCAGTGCTTCGGCAGACCCCCTCGAGCTCCAGCTCACGCAACAGCCTGGCTCAACCAGCCTTTCCAGGCACGCACAGGTAGCCACCCTGCCGCCGCACAGCCAGCCAGCAGGCGTACTAATGTACTAAAGCTACCAGGCCTTGATGCGTCCAGATTCTTGCTCGTGAAGAAGAGCCAACGAAGCGTGCAGATTGCAACGGAGAGAACATATTGCAGATTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCAATGCGGATGTTGTACAGATTATTGGTTGCGAATGTTGGCACATTTCTACCTCGATTATTCCAACGAGGACGATTCATCCTTCATCCCAAAAAAAAAA]

[+] EMBL BI813369             [GCTCCCCGCGGGGCTCTGCACCCACTTTTGCCTCGCCATGGGCTCAGTGCTTCGGCAGACCCCCTCGAGCTCCAGCTCACGCAACAGCCTGGCTCAACCAGCCTTTCCAGGCACGCACAGGTAGCCACCCTGCCGCCGCACAGCCAGCCAGCAGGCGTACTAATGTACTAAAGCTACCAGGCCTTGATGCGTCCAGATTCTTGCTCGTGAAGAAGAGCCAACGAAGCGTGCAGATTGCAACGGAGAGAACATATTGCAGATTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCAATGCGGATGTTGTACAGATTATTGGTTGCGAATGTTGGCACATTTCTACCTCGATTATTCCAACGAGGACGATTCATCCTTCATCCCAAAAAAAAAA]




>consensus_9311#2
GCTCCCCGCGGGGCTCTGCACCCACTTTTGCCTCGCCATGGGCTCAGTGCTTCGGCAGAC
CCCCTCGAGCTCCAGCTCACGCAACAGCCTGGCTCAACCAGCCTTTCCAGGCACGCACAG
GTAGCCACCCTGCCGCCGCACAGCCAGCCAGCAGGCGTACTAATGTACTAAAGCTACCAG
GCCTTGATGCGTCCAGATTCTTGCTCGTGAAGAAGAGCCAACGAAGCGTGCAGATTGCAA
CGGAGAGAACATATTGCAGATTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCA
ATGCGGATGTTGTACAGATTATTGGTTGCGAATGTTGGCACATTTCTACCTCGATTATTC
CAACGAGGACGATTCATCCTTCATCCCAAAAAAAAAA

consensusID : consensus_9311#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [TGGGGCCNGCGGGATGNTNTGTACTAATGTACTAAAGCTACCGGCCTTGATGCNTCCGATTCTTGCTGTGAAGAAGACAAACNAANCGTGCAGANNGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGANCGATTCATCCTGTCATCGAGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTTATGAGAAATTTTTTTAG]

[+] EMBL AA753213             [TGGGGCCNGCGGGATGNTNTGTACTAATGTACTAAAGCTACCGGCCTTGATGCNTCCGATTCTTGCTGTGAAGAAGACAAACNAANCGTGCAGANNGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGANCGATTCATCCTGTCATCGAGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTTATGAGAAATTTTTTTAG]




>consensus_9311#3
TGGGGCCNGCGGGATGNTNTGTACTAATGTACTAAAGCTACCGGCCTTGATGCNTCCGAT
TCTTGCTGTGAAGAAGACAAACNAANCGTGCAGANNGCAACGGAAGAACATATTCAGATT
CTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGT
TGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGANCGATTCATCCTGTCATCG
AGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTTATGAGAAATTTTTTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCAC 60
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      CTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGG 120
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      CGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGG 180
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      ATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGC 240
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      GGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTG 300
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#1      -----------------GTCTGCAAC-CACAACTTGCTTGGGCCTAGCAGCCAGGGCGGC 42
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      CAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCC 360
consensus_9311#2      -----------------------------GCTCCCCGCGGGGCTCTGCACCCACTTTTGC 31
                                                                                  

consensus_9311#1      AATGTGCTGTGCGGCAGACCCACCTGCGGAGCTGCCAAGCTGCGCT---AGCAACGCCTT 99
consensus_9311#3      ------------------------------------------------------------
consensus_9311#0      CCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTC 420
consensus_9311#2      CTCGCCATGGGCT-CAGTGCTTCGGCAGACCCCCTCGAGCTCCAGCTCACGCAACAGCCT 90
                                                                                  

consensus_9311#1      GGCTGCAAACCGCCTGCTGCACAGGCCACCCAGGTGTA-GCCAACCGCCTAGCACAGCAC 158
consensus_9311#3      ---------------------------------------------------------TGG 3
consensus_9311#0      GAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGC-C 479
consensus_9311#2      GGCT-CAACCAGCCTTT--------CCAGGCACGCACAGGTAGCCACCCTGCCGCCGCAC 141
                                                                                  

consensus_9311#1      AGCACAGCACGCGGCGTGACTGAATGTGACTAAAGCTGACCGGCCTTGATGCGTCC-GAT 217
consensus_9311#3      GGCCNGCGGGATGNTNTGTACTAATGT-ACTAAAGCT-ACCGGCCTTGATGCNTCC-GAT 60
consensus_9311#0      GCCGCCGCCGCCGCGGCGTACTAATGT-ACTAAAGCT-ACCGGCCTTGATGCGTCC-GAT 536
consensus_9311#2      AGCCAGCCAGCAGGCGTA--CTAATGT-ACTAAAGCTACCAGGCCTTGATGCGTCCAGAT 198
                        *         *         ***** *********  * *********** *** ***

consensus_9311#1      TCTTGCT-GTGAAGAAGAGCCAACGATAGCGTGCAGATTGCAACGGA-AGAACATATTCA 275
consensus_9311#3      TCTTGCT-GTGAAGAAGA-CAAACNA-ANCGTGCAGANNGCAACGGA-AGAACATATTCA 116
consensus_9311#0      TCTTGCT-GTGAAGAAGAGCAAACGA-AGCGTGCAGATTGCAACGGA-AGAACATATTCA 593
consensus_9311#2      TCTTGCTCGTGAAGAAGAGCCAACGA-AGCGTGCAGATTGCAACGGAGAGAACATATTGC 257
                      ******* ********** * *** * * ********  ******** **********  

consensus_9311#1      AGATGTCCCTTCTTTGTTTTCTT-TCGTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTG 334
consensus_9311#3      GA---TTCTTTCTTTGTTTTCTT-TCGTTCC--GGTTTCTCCCAAA-TGCGGATTTGT-- 167
consensus_9311#0      GA---TTCTTTCTTTGTTTTCTT-TCGTTCC--GGTTTCTCCCAAA-TGCGGATTTGT-- 644
consensus_9311#2      AGA--TTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCAA-TGCGGATGTTGT- 313
                           * * ************** *******  *  ******* ** ******* *    

consensus_9311#1      ACAAGATTATTGGGTTGCGAATTT--GCAATTTGCTACCTCGATTATTCCAACGAGGAGC 392
consensus_9311#3      ACA-GATTATTGG-TTGCGAATTT--GCAATTTGCTACCTCGATTATTCCAACGAGGANC 223
consensus_9311#0      ACA-GATTATTGG-TTGCGAATTT--GCAATTTGCTACCTCGATTATTCCAACGAGGAGC 700
consensus_9311#2      ACA-GATTATTGG-TTGCGAATGTTGGCACATTTCTACCTCGATTATTCCAACGAGGA-C 370
                      *** ********* ******** *  ***  ** ************************ *

consensus_9311#1      GATTCATCCTGTCATC-AGGCATTGCCCCATGTACTATGACAACATA-GCCCACAATTTT 450
consensus_9311#3      GATTCATCCTGTCATCGAGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTT 283
consensus_9311#0      GATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACATA---TGACAATTTT 757
consensus_9311#2      GATTCATCCT-TCATC-----------CCAAAAAAAAAA--------------------- 397
                      ********** *****           ***      *                       

consensus_9311#1      ATGAGAAATTTTTTTAGTATAAAAA------- 475
consensus_9311#3      ATGAGAAATTTTTTTAG--------------- 300
consensus_9311#0      ATGAGAAATTTTTTTAGTATAAAAAAAAAAGG 789
consensus_9311#2      --------------------------------