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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 946 fasta sequence
[TAACACTTCATATTCTCCCTTAAACGACGACGGTAATATTAATTACAACATTACAATACATACGTATATGTTTCTTAATTAGATATATGCACGTGGACATGCGTACACAAATATATATATATATATATATATATATATATATATATATATATATAGCAGCACGTAATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCACGCCGCCGAGGGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCAACGGCGCCGCCAGCGTCCCGGAGACTCCGGCGAGCGACGCGTCTCACGCGGCCAGCGGGGTGGTGACGACCACGCGGCACCTGTCGTTGAGCAGCGGCGTGAGCGTCGCCGCGGTGAGCTTCCCCAGGTTGATGGCGAACGCGCCGCTGCCGTCCGCCGTCGCGCCGGCCACCGCCCTGCCCCCGCACTCCAGCTGCACGGCGGCGTTGGGGAATCCCGGAACGGACGCCGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCATGACGGCGCCGCCACTACTAGCCTCCGCGGCGTGCGGCGAGATGCCGACGGCGACGAGGAGGGCGGCGGCGAGGAGAAGGCTCCTGATCGACGACGACGACGACTTTGCCATTTCTACCGGAGCTAGCGAGCTAGCTAGCTATACTAGCGTACGAGAGCTACCGAGGCTGCTGCTATAGCTAGCTCGATCAGATCAAGCGCTCAGTGTTGTGCT]
[+] EMBL CB682052 [TAACACTTCATATTCTCCCTTAAACGACGACGGTAATATTAATTACAACATTACAATACATACGTATATGTTTCTTAATTAGATATATGCACGTGGACATGCGTACACAAATATATATATATATATATATATATATATATATATATATATATATAGCAGCACGTAATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCACGCCGCCGAGGGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCAACGGCGCCGCCAGCGTCCCGGAGACTCCGGCGAGCGACGCGTCTCACGCGGCCAGCGGGGTG ]
[-] EMBL AK067497 [ CCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCAGGCCGCCGAGGGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCACCGGCGCCGCCAGCGTCCCGGCGACGCCGGCGAGCGATGCGTCGCACGCGGCCAGCGGGGTGGTGACGACCACGCGGCACCTGTCGTTGAGCAGCGGCGTGAGCGTCGCCGCGGTGAGCTTCCCCAGGTTGATGGCGAACGCGCCGCTGCCGTCCGCCGTCGCGCCGGCCACCGCCCTGCCCCCGCACTCCAGCTGCACGGCGGCGTTGGGGAATCCCGGAACGGACGCCGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCATGACGGCGCCGCCACTACTAGCCTCCGCGGCGTGCGGCGAGATGCCGACGGCGACGAGGAGGGCGGCGGCGAGGAGAAGGCTCCTGATCGACGACGACGACGACTTTGCCATTTCTACCGGAGCTAGCGAGCTAGCTAGCTATACTAGCGTACGAGAGCTACCGAGGCTGCTGCTATAGCTAGCTCGATCAGATCAAGCGCTCAGTGTTGTGCT]
consensusID : consensus_9314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 925 fasta sequence
[ACAAACGAACAACATTAGCATAGTATTAGACAGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGATCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCACTGAGGATCTGCGCGATGAGGGTGATGAGGCCGCCGAGCCCTCCGAGGCCACCGGTGCCGCCGAGGAGCTGCACCGGCGCCGTGAGCGTCCCGGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGTACTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAACGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCACGCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGGCGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGTCGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCACACACACACGCTCTAGATATCTCTTCTCTGTGAATATACTCTTATCTTGAGCTCACTGAGACTGTGT]
[-] EMBL AU077624 [ACAAACGAACAACATTAGCATAGTATTAGACAGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCG ]
[-] EMBL AK072786 [ AGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGATCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCACTGAGGATCTGCGCGATGAGGGTGATGAGGCCGCCGAGCCCTCCGAGGCCACCGGTGCCGCCGAGGAGCTGCACCGGCGCCGTGAGCGTCCCGGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGTACTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAACGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCACGCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGGCGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGTCGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCACACACACACGCTCTAGATATCTCTTCTCTGTGAATATACTCTTATCTTGAGCTCACTGAGACTGTGT]
[-] EMBL AK104974 [ AGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGATCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCACTGAGGATCTGCGTGATGAGGGTGATGAGGCCGCCGAGCCCTCCGAGGCCACCGGTGCCGCCGAGGAGCTGCACCGGCGCCGTGAGCGTCCCGGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGCACTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAACGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCACGCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGGCGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGTCGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCACACACACACGCTCTAGATATCTCTTCTCTGTGAATATACTCTTATCTTGAGCTCACTGAGACTGTG ]
consensusID : consensus_9314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[AATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACCATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCNATGATGCCGGTGATGCCGCCNATGAGGCCGCCCATNGCCGCCGAGGGCGCCGCCCCCACCGGCGCCNCCNTCACCCANGACNGCACGGCCCNNCTTCGTCCCNGCCACCCCGGCNANCNACNCCTCCCCCCCGGCCANNCGGGGTGNTGACCACACTCNGTCCTTTCTTTCACCANNGCTCCANCNCCCCTTCTGTNACCTTCCCCANTTNANGGTNACCCCCNCNNCTNC]
[-] EMBL AA753665 [AATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACCATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCNATGATGCCGGTGATGCCGCCNATGAGGCCGCCCATNGCCGCCGAGGGCGCCGCCCCCACCGGCGCCNCCNTCACCCANGACNGCACGGCCCNNCTTCGTCCCNGCCACCCCGGCNANCNACNCCTCCCCCCCGGCCANNCGGGGTGNTGACCACACTCNGTCCTTTCTTTCACCANNGCTCCANCNCCCCTTCTGTNACCTTCCCCANTTNANGGTNACCCCCNCNNCTNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9314#0 TAACACTTCATATTCTCCCTTAAACGACGACGGTAATATTAATTACAACAT-TACAATAC 59
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 -------------ACAAACGAACAACATTAGCATAGTATTAGACAGTACATATATAGCAT 47
consensus_9314#0 ATACGTATATGTTT-CTTAATTAGATATATGCACGTGGACATGCGTACACAAATATATAT 118
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 AATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACG-ACGCATGGCACGATATAC 106
consensus_9314#0 ATATATATATATATATATATATATATATATATATATAGCAGCACGTAATGCGACGGTACA 178
consensus_9314#2 ----------------------------------------------AATGCGACGGTACA 14
consensus_9314#1 AATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATA 166
** * ** *
consensus_9314#0 AACTAAAGCGGTGCAGGGTAATCGACCA--TTAGGTCCAT--TAATTATACTGCCACGTA 234
consensus_9314#2 AACTAAAGCGGTGCAGGGTAATCGACCA--TTAGGTCCAT--TAATTATACTGCCACGTA 70
consensus_9314#1 TATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCA 226
* ** ** * **** * *** * *** **** * * *
consensus_9314#0 TCGATTAATTTGGGGACTAGCAAAT--CCGTTAATTTGTGCTTAAACTGCCACAGAT--G 290
consensus_9314#2 TCGATTAATTTGGGGACTAGCAAAT--CCGTTAATTTGTGCTTAAACTGCCACAGAT--G 126
consensus_9314#1 TCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGA 286
*** * ** * * * * * ******* * * * ***
consensus_9314#0 TTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCA 350
consensus_9314#2 TTGATCTAGACGACGGAGAAGGCCGATGGGACCATGCTAATGATGTTGCCGAGGACGCCA 186
consensus_9314#1 TCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCA 346
* *********** ****** * * * **** *** * * *** * ******** ****
consensus_9314#0 CTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCA-CGCCGCCGAG 409
consensus_9314#2 CTGATGATCTGCCCNATGATGCCGGTGATGCCGCCNATGAGGCCGCCCATNGCCGCCGAG 246
consensus_9314#1 CTGAGGATCTGCGCGATGAGGGTGATGAGGCCGCCGA-------GCCCT------CCGAG 393
**** ******* * **** * * *** ****** * **** *****
consensus_9314#0 GGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCAACGGCGCCGCCAGCGTCCC 469
consensus_9314#2 GGCGCCGCCCCCACCGGCGCCNCCNTCACCCANGA-CNGCA-CGGC-CCNNCTTCGTCCC 303
consensus_9314#1 G---------CCACCGGTGCCGCCG------AGGAGCTGCACCGGCGCCGTGAGCGTCCC 438
* ******* *** ** * ** * *** **** ** ******
consensus_9314#0 GGAGACTCCGGCGAGCGACGCGTCTCACGCGGCCAGCGGGGTGGTGACGACCACGCGGCA 529
consensus_9314#2 NGCCACCCCGGCNANCNACNCCTCCCCCCCGGCCANNCGG--GGTGNTGACCACACTCNG 361
consensus_9314#1 GGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGTA 498
* ** **** * ** * ** * * * **** ** *** *****
consensus_9314#0 CCTGTCGTTGAGCAGCGGCGTGAGCGTCGCCGCGGTGAGCTTCCCCAGGTTGATGGCGAA 589
consensus_9314#2 TCCTTTCTTTCACCANNGCTCCANCNCCCCTTCTGTNACCTTCCCCAN-TTNANGGTNAC 420
consensus_9314#1 CTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAA 558
* * * * * * * * * * **** ** * ** *
consensus_9314#0 CGCGCCGCTGCCGTCCGCCGTCGCGCCGGCCACCGCCCTGCCCCCGCACTCCAGCTGCAC 649
consensus_9314#2 CCCCNCNNCTNC------------------------------------------------ 432
consensus_9314#1 CGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCAC 618
* * * *
consensus_9314#0 GGCGGCGTTGGGGAATCCCGGAACGGACGCCGCGTTGATGGAGCTCCCGGCGCTGCACGG 709
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 GCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGG 678
consensus_9314#0 GACTACGCCGGTGACGAGGCCCATGACGGCGCCGCCACTACTAGCCTCCGCGGCGTGCGG 769
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 GACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGG 738
consensus_9314#0 CGAGATGCCG------ACGGCGACGAGGAGGGCGGCGGCGAGGAGAAGGCTCCTGATCGA 823
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 CGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGT 798
consensus_9314#0 CGACGACGACGACTTTGCCATT--TCTACCGGAGCTAGCGAGCTAGCTAGCTATA-CTAG 880
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 CGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCA 858
consensus_9314#0 CGTACGAGAGCTACCGAGGCTGCTGCTATAGCTAGCTCGATCAGATCAAGCGCTCAGTGT 940
consensus_9314#2 ------------------------------------------------------------
consensus_9314#1 CACACACACGCTCTAGATATCTCTTCTCT-GTGAATATACTCTTATCTTGAGCTCACTGA 917
consensus_9314#0 TGTGCT-- 946
consensus_9314#2 --------
consensus_9314#1 GACTGTGT 925
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||