These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 946 fasta sequence [TAACACTTCATATTCTCCCTTAAACGACGACGGTAATATTAATTACAACATTACAATACATACGTATATGTTTCTTAATTAGATATATGCACGTGGACATGCGTACACAAATATATATATATATATATATATATATATATATATATATATATATAGCAGCACGTAATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCACGCCGCCGAGGGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCAACGGCGCCGCCAGCGTCCCGGAGACTCCGGCGAGCGACGCGTCTCACGCGGCCAGCGGGGTGGTGACGACCACGCGGCACCTGTCGTTGAGCAGCGGCGTGAGCGTCGCCGCGGTGAGCTTCCCCAGGTTGATGGCGAACGCGCCGCTGCCGTCCGCCGTCGCGCCGGCCACCGCCCTGCCCCCGCACTCCAGCTGCACGGCGGCGTTGGGGAATCCCGGAACGGACGCCGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCATGACGGCGCCGCCACTACTAGCCTCCGCGGCGTGCGGCGAGATGCCGACGGCGACGAGGAGGGCGGCGGCGAGGAGAAGGCTCCTGATCGACGACGACGACGACTTTGCCATTTCTACCGGAGCTAGCGAGCTAGCTAGCTATACTAGCGTACGAGAGCTACCGAGGCTGCTGCTATAGCTAGCTCGATCAGATCAAGCGCTCAGTGTTGTGCT] [+] EMBL CB682052 [TAACACTTCATATTCTCCCTTAAACGACGACGGTAATATTAATTACAACATTACAATACATACGTATATGTTTCTTAATTAGATATATGCACGTGGACATGCGTACACAAATATATATATATATATATATATATATATATATATATATATATATAGCAGCACGTAATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCACGCCGCCGAGGGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCAACGGCGCCGCCAGCGTCCCGGAGACTCCGGCGAGCGACGCGTCTCACGCGGCCAGCGGGGTG ] [-] EMBL AK067497 [ CCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCAGGCCGCCGAGGGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCACCGGCGCCGCCAGCGTCCCGGCGACGCCGGCGAGCGATGCGTCGCACGCGGCCAGCGGGGTGGTGACGACCACGCGGCACCTGTCGTTGAGCAGCGGCGTGAGCGTCGCCGCGGTGAGCTTCCCCAGGTTGATGGCGAACGCGCCGCTGCCGTCCGCCGTCGCGCCGGCCACCGCCCTGCCCCCGCACTCCAGCTGCACGGCGGCGTTGGGGAATCCCGGAACGGACGCCGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCATGACGGCGCCGCCACTACTAGCCTCCGCGGCGTGCGGCGAGATGCCGACGGCGACGAGGAGGGCGGCGGCGAGGAGAAGGCTCCTGATCGACGACGACGACGACTTTGCCATTTCTACCGGAGCTAGCGAGCTAGCTAGCTATACTAGCGTACGAGAGCTACCGAGGCTGCTGCTATAGCTAGCTCGATCAGATCAAGCGCTCAGTGTTGTGCT] consensusID : consensus_9314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 925 fasta sequence [ACAAACGAACAACATTAGCATAGTATTAGACAGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGATCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCACTGAGGATCTGCGCGATGAGGGTGATGAGGCCGCCGAGCCCTCCGAGGCCACCGGTGCCGCCGAGGAGCTGCACCGGCGCCGTGAGCGTCCCGGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGTACTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAACGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCACGCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGGCGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGTCGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCACACACACACGCTCTAGATATCTCTTCTCTGTGAATATACTCTTATCTTGAGCTCACTGAGACTGTGT] [-] EMBL AU077624 [ACAAACGAACAACATTAGCATAGTATTAGACAGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCG ] [-] EMBL AK072786 [ AGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGATCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCACTGAGGATCTGCGCGATGAGGGTGATGAGGCCGCCGAGCCCTCCGAGGCCACCGGTGCCGCCGAGGAGCTGCACCGGCGCCGTGAGCGTCCCGGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGTACTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAACGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCACGCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGGCGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGTCGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCACACACACACGCTCTAGATATCTCTTCTCTGTGAATATACTCTTATCTTGAGCTCACTGAGACTGTGT] [-] EMBL AK104974 [ AGTACATATATAGCATAATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACGACGCATGGCACGATATACAATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATATATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCATCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGATCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCACTGAGGATCTGCGTGATGAGGGTGATGAGGCCGCCGAGCCCTCCGAGGCCACCGGTGCCGCCGAGGAGCTGCACCGGCGCCGTGAGCGTCCCGGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGCACTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAACGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCACGCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGGGACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGGCGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGTCGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCACACACACACGCTCTAGATATCTCTTCTCTGTGAATATACTCTTATCTTGAGCTCACTGAGACTGTG ] consensusID : consensus_9314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [AATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACCATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCNATGATGCCGGTGATGCCGCCNATGAGGCCGCCCATNGCCGCCGAGGGCGCCGCCCCCACCGGCGCCNCCNTCACCCANGACNGCACGGCCCNNCTTCGTCCCNGCCACCCCGGCNANCNACNCCTCCCCCCCGGCCANNCGGGGTGNTGACCACACTCNGTCCTTTCTTTCACCANNGCTCCANCNCCCCTTCTGTNACCTTCCCCANTTNANGGTNACCCCCNCNNCTNC] [-] EMBL AA753665 [AATGCGACGGTACAAACTAAAGCGGTGCAGGGTAATCGACCATTAGGTCCATTAATTATACTGCCACGTATCGATTAATTTGGGGACTAGCAAATCCGTTAATTTGTGCTTAAACTGCCACAGATGTTGATCTAGACGACGGAGAAGGCCGATGGGACCATGCTAATGATGTTGCCGAGGACGCCACTGATGATCTGCCCNATGATGCCGGTGATGCCGCCNATGAGGCCGCCCATNGCCGCCGAGGGCGCCGCCCCCACCGGCGCCNCCNTCACCCANGACNGCACGGCCCNNCTTCGTCCCNGCCACCCCGGCNANCNACNCCTCCCCCCCGGCCANNCGGGGTGNTGACCACACTCNGTCCTTTCTTTCACCANNGCTCCANCNCCCCTTCTGTNACCTTCCCCANTTNANGGTNACCCCCNCNNCTNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9314#0 TAACACTTCATATTCTCCCTTAAACGACGACGGTAATATTAATTACAACAT-TACAATAC 59 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 -------------ACAAACGAACAACATTAGCATAGTATTAGACAGTACATATATAGCAT 47 consensus_9314#0 ATACGTATATGTTT-CTTAATTAGATATATGCACGTGGACATGCGTACACAAATATATAT 118 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 AATTTTAGAAGCCCACATGAACTGGTATACATAGAGAAACG-ACGCATGGCACGATATAC 106 consensus_9314#0 ATATATATATATATATATATATATATATATATATATAGCAGCACGTAATGCGACGGTACA 178 consensus_9314#2 ----------------------------------------------AATGCGACGGTACA 14 consensus_9314#1 AATCTAAAGCAGCAGGGTAATTAATTGACCACGCATTAGTTAGGCCGCCCCGTTGCTATA 166 ** * ** * consensus_9314#0 AACTAAAGCGGTGCAGGGTAATCGACCA--TTAGGTCCAT--TAATTATACTGCCACGTA 234 consensus_9314#2 AACTAAAGCGGTGCAGGGTAATCGACCA--TTAGGTCCAT--TAATTATACTGCCACGTA 70 consensus_9314#1 TATAAACACGTATTAATTTAATTTATATGCTTAACTACATATTAATATCATCATAATCCA 226 * ** ** * **** * *** * *** **** * * * consensus_9314#0 TCGATTAATTTGGGGACTAGCAAAT--CCGTTAATTTGTGCTTAAACTGCCACAGAT--G 290 consensus_9314#2 TCGATTAATTTGGGGACTAGCAAAT--CCGTTAATTTGTGCTTAAACTGCCACAGAT--G 126 consensus_9314#1 TCGTCCATTTGACACGCCGCCGCCTGGCTGCAGGTTTGTGCGCAGGCGATCGATGATCGA 286 *** * ** * * * * * ******* * * * *** consensus_9314#0 TTGATCTAGACGACGGAGAAGGCCGATGGGACGATGCTAATGATGTTGCCGAGGACGCCA 350 consensus_9314#2 TTGATCTAGACGACGGAGAAGGCCGATGGGACCATGCTAATGATGTTGCCGAGGACGCCA 186 consensus_9314#1 TCGATCTAGACGAGGGAGAATGGCAAGGGGATGATGTTGAGGATCTCGCCGAGGAGGCCA 346 * *********** ****** * * * **** *** * * *** * ******** **** consensus_9314#0 CTGATGATCTGCCCGATGATGCCGGTGATGCCGCCGATGAGGCCGCCCA-CGCCGCCGAG 409 consensus_9314#2 CTGATGATCTGCCCNATGATGCCGGTGATGCCGCCNATGAGGCCGCCCATNGCCGCCGAG 246 consensus_9314#1 CTGAGGATCTGCGCGATGAGGGTGATGAGGCCGCCGA-------GCCCT------CCGAG 393 **** ******* * **** * * *** ****** * **** ***** consensus_9314#0 GGCGCCGCCGCCACCGGCGCCGCCGTCGCCGAGGAGCTGCAACGGCGCCGCCAGCGTCCC 469 consensus_9314#2 GGCGCCGCCCCCACCGGCGCCNCCNTCACCCANGA-CNGCA-CGGC-CCNNCTTCGTCCC 303 consensus_9314#1 G---------CCACCGGTGCCGCCG------AGGAGCTGCACCGGCGCCGTGAGCGTCCC 438 * ******* *** ** * ** * *** **** ** ****** consensus_9314#0 GGAGACTCCGGCGAGCGACGCGTCTCACGCGGCCAGCGGGGTGGTGACGACCACGCGGCA 529 consensus_9314#2 NGCCACCCCGGCNANCNACNCCTCCCCCCCGGCCANNCGG--GGTGNTGACCACACTCNG 361 consensus_9314#1 GGCGACGGCGGCCAGGGACGCGTCGCACGCCGCCAGCGGGGTGGTCACCACCACCTTGTA 498 * ** **** * ** * ** * * * **** ** *** ***** consensus_9314#0 CCTGTCGTTGAGCAGCGGCGTGAGCGTCGCCGCGGTGAGCTTCCCCAGGTTGATGGCGAA 589 consensus_9314#2 TCCTTTCTTTCACCANNGCTCCANCNCCCCTTCTGTNACCTTCCCCAN-TTNANGGTNAC 420 consensus_9314#1 CTGGTTCCCGGCCATGGCCATGAGCATCGTCGCGTTGAGCGCGCCCATGTTGATGGTGAA 558 * * * * * * * * * * **** ** * ** * consensus_9314#0 CGCGCCGCTGCCGTCCGCCGTCGCGCCGGCCACCGCCCTGCCCCCGCACTCCAGCTGCAC 649 consensus_9314#2 CCCCNCNNCTNC------------------------------------------------ 432 consensus_9314#1 CGCCCCCGTGCCGTCCGCCGTCGCGCCGCCCACCACCCTGCCGCCGCACACCATCTGCAC 618 * * * * consensus_9314#0 GGCGGCGTTGGGGAATCCCGGAACGGACGCCGCGTTGATGGAGCTCCCGGCGCTGCACGG 709 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 GCCGGCGTCGGGGAACGCGGGGACCGACGCGGCGTTGATGGAGCTCCCGGCGCTGCACGG 678 consensus_9314#0 GACTACGCCGGTGACGAGGCCCATGACGGCGCCGCCACTACTAGCCTCCGCGGCGTGCGG 769 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 GACTACGCCGGTGACGAGGCCCGTGACAGCCCTACCCGCCGCGGCCTCGGAGCCGTGCGG 738 consensus_9314#0 CGAGATGCCG------ACGGCGACGAGGAGGGCGGCGGCGAGGAGAAGGCTCCTGATCGA 823 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 CGCGACGATGCCGACCGCGGTGGCGGCCACGACGAGGACGAGGAGAAGGTTCTTGGACGT 798 consensus_9314#0 CGACGACGACGACTTTGCCATT--TCTACCGGAGCTAGCGAGCTAGCTAGCTATA-CTAG 880 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 CGGCGCTGCCATTGCTAGCTGTGATCGATCGAGATCGAACGAATGCCTATCTCTCTCTCA 858 consensus_9314#0 CGTACGAGAGCTACCGAGGCTGCTGCTATAGCTAGCTCGATCAGATCAAGCGCTCAGTGT 940 consensus_9314#2 ------------------------------------------------------------ consensus_9314#1 CACACACACGCTCTAGATATCTCTTCTCT-GTGAATATACTCTTATCTTGAGCTCACTGA 917 consensus_9314#0 TGTGCT-- 946 consensus_9314#2 -------- consensus_9314#1 GACTGTGT 925 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||