These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2339 fasta sequence [ACTCGCCTCTTCTCTCCTCTTCTCTCTCCCGGTGTCTCTCTGCTCTGATACAGAGAGATTATTTGGGTACTGTGTGTGCGTGTGTCAGAGTGAGAGAGAGATAGAGAGAGAGAGGCAGCTGATCGCCACAGCGTGCTCCTCGCCGCCCGCCTGCCATGGCCGACCCATACGGCGACGGCAAGGGCCTCAAGCAGCAGCAGCGCCAGAAGCTCAAGCCCGCGCTCGAGGTGGAGGACTTCATCAACCTCCTCCACGGCTCCGATCCCGTCCGAGTCGAGCTCACCCGCCTCGAGAACGAGCTCCAGTATAAGGAGAAGGAGCTTGGGGAGGCGCAGGCTGAGATCAAGGCTCTGCGGCTGTCCGAGCGAGCGCGCGAGAAGGCCGTCGAGGATCTTACGGAAGAATTGACAAAGGTGGATGGGAAGCTGAAGCTTACAGAGTCTCTCCTCGAAAGCAAGAACCTTGAGGCAAAGAAGATAAACGATGAAAAGAAAGCAGCACTTGCAGCCCAATTTGCAGCAGAGGCTACACTTCGAAGGGTTCATGCAGCACAGAAGGATGATGACATGCCCCCTATTGAGGCCATTCTTGCGCCATTGGAAGCTGAACTGAAACTAGCTCGTCATGAGATCGCAAAACTACAAGATGACAACAGGGCATTGGACCGCCTTACTAAGTCCAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACGGTTCAGATAGCATTAGCAAAAGCTTCTTTGGTTGATGATTTGCAAAACAAAAACCAAGAATTGATGAAACAGATCGAGATCTGTCAGGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAAAAAGTAGCTGAGGTTGAGAAGCTCACTCAGACTGTCAGAGAGCTCGAAGAAGCTGTTCTTGCTGGAGGTGCAGCTGCAAATGCTGTGAGAGACTATCAGCGCAAAGTCCAGGAGATGAATGAAGAAAGGAAAACTCTTGATCGTGAACTAGCTCGTGCGAAGGTTTCGGCAAATAGAGTTGCAGTAGTGGTGGCAAATGAATGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAACAATGGTTAGAAGAACGGAGGATTTTACAA-GGAGAAATGCAGCAACTCCGGGATAAACTGGCTATAGCAGAAAGGGCCGCACGATCAGAAGCTCAATTGAAAGATAAGTTCCAGCTACGGCTTAAAGTACTTGAGGAAGGTTTGAGAATGTCAACGACTCGAACCAATGTTAGTGCAGCACGCCGCCAGTCTATTGGTGGTGCTGATAGTTTATCCAAGACCAATGGGTTCCTATCAAAACGGCCATCATTCCAGATGAGATCGTCAGTATCTA-CCACCACAACTACTCTGGTCAACCATGCAAAAGGGGCATCAAAGTCTTTTGACGGAGGCTGTAGATCACTTGACCGTTACAAGGGACATGTAAACGGGTCTGGTATGAATGTATCTACGGACTCCAGTGAAGATAAGGAATCAAACAACTCAGATGAGAAGGCTAACGAATTTACATCAGTTGAGACAGAGGATACGGTATCAGGTTTGCTGTATGATACGCTGCAAAAGGAGGTAATTGCTCTAAGGAAGGCTTGCCATGAAAAGGACCAAAGCCTGAAAGACAAGGACGATGCAGTTGAGATGCTAGCAAAGAAAGTAGACACATTGACAAAGGCAATGGAATCAGAGGGTAAAAAAAGGAGGATGGAGGTAGCTGCCATGGAAAAGGAGATGGCGGCTTTGCGGTTGGAGAAAGAGCAGGATAACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGGACATTGCCTC-GGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAACACGGCGGCAACCAGCCAACCCTTACGAAGCATTCAAATAAGAGGAGAGCTTAATTGGGTGCTTCGACATCATATCCTTGTCTAGTTGTTGAATGTTGGATTAGTAGTGATGACGAGCTGCTGATTGATGTCTGGAGAAGATGGATCGATCGGTTACATTTTTACACGTCGAGCCGAGAAGACGGAGCGATTAGCCTATATCTCGTGGGAATCGCGACGACTACTCTGTCTAATTAACCTGGCAAATTAAGCTAGTCTTATTTTTAACCTTTGGTTTCTTGATGAGATTTGGTGGTGTG--TTTTTTTTTGGCAATCATCCATCATCGTTGCCTGGTGCTGTATAGGTTTGGTGAGCCCATGCATGCATATTTTTAGTCTCAAATTTGTTTGTAATCTTAATACTAAAGAGGATCGGATGAT--TATATATATATATATATGCTGGCCATATATAAAGATTGAGTTTCCTG] [+] EMBL CB676334 [ACTCGCCTCTTCTCTCCTCTTCTCTCTCCCGGTGTCTCTCTGCTCTGATACAGAGAGATTATTTGGGTACTGTGTGTGCGTGTGTCAGAGTGAGAGAGAGATAGAGAGAGAGAGGCAGCTGATCGCCACAGCGTGCTCCTCGCCGCCCGCCTGCCATGGCCGACCCATACGGCGACGGCAAGGGCCTCAAGCAGCAGCAGCGCCAGAAGCTCAAGCCCGCGCTCGAGGTGGAGGACTTCATCAACCTCCTCCACGGCTCCGATCCCGTCCGAGTCGAGCTCACCCGCCTCGAGAACGAGCTCCAGTATAAGGAGAAGGAGCTTGGGGAGGCGCAGGCTGAGATCAAGGCTCTGCGGCTGTCCGAGCGAGCGCGCGAGAAGGCCGTCGAGGATCTTACGGAAGAATTGACAAAGGTGGATGGGAAGCTGAAGCTTACAGAGTCTCTCCTCGAAAGCAAGAACCTTGAGGCAAAGAAGATAAACGATGAAAAGAAAGCAGCACTTGCAGCCCAATTTGCAGCAGAGGCTACACTTCGAAGGGTTCATGCAGCACAGAAGGATGATGACATGCCCCCTATTGAGGCCATTCTTGCGCCATTGGAAGCTGAACTGAAACTAGCTCGTCATGAGATCGCAAAACTACAAGATGACAACAGGGCATTGGACCGCCTTACTAAGTCCAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACGGTTCAGATAGCATTAGCAAAAGCTTCTTTGGTTGATGATTTGCAAAACAAAAACCCAGAATTGATGAAACAG ] [+] EMBL AK066694 [ CTCTTCTCTCCTCTTCTCTCTCCCGGTGTCTCTCTGCTCTGATACAGAGAGATTATTTGGGTACTGTGTGTGTGTGTGTCAGAGTGAGAGAGAGATAGAGAGAGAGAGGCAGCTGATCGCCACAGCGTGCTCCTCGCCGCCCGCCTGCCATGGCCGACCCATACGGCGACGGCAAGGGCCTCAAGCAGCAGCAGCGCCAGAAGCTCAAGCCCGCGCTCGAGGTGGAGGACTTCATCAACCTCCTCCACGGCTCCGATCCCGTCCGAGTCGAGCTCACCCGCCTCGAGAACGAGCTCCAGTATAAGGAGAAGGAGCTTGGGGAGGCGCAGGCTGAGATCAAGGCTCTGCGGCTGTCCGAGCGAGCGCGCGAGAAGGCCGTCGAGGATCTTACGGAAGAATTGACAAAGGTGGATGGGAAGCTGAAGCTTACAGAGTCTCTCCTCGAAAGCAAGAACCTTGAGGCAAAGAAGATAAACGATGAAAAGAAAGCAGCACTTGCAGCCCAATTTGCAGCAGAGGCTACACTTCGAAGGGTTCATGCAGCACAGAAGGATGATGACATGCCCCCTATTGAGGCCATTCTTGCGCCATTGGAAGCTGAACTGAAACTAGCTCGTCATGAGATCGCAAAACTACAAGATGACAACAGGGCATTGGACCGCCTTACTAAGTCCAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACGGTTCAGATAGCATTAGCAAAAGCTTCTTTGGTTGATGATTTGCAAAACAAAAACCAAGAATTGATGAAACAGATCGAGATCTGTCAGGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAAAAAGTAGCTGAGGTTGAGAAGCTCACTCAGACTGTCAGAGAGCTCGAAGAAGCTGTTCTTGCTGGAGGTGCAGCTGCAAATGCTGTGAGAGACTATCAGCGCAAAGTCCAGGAGATGAATGAAGAAAGGAAAACTCTTGATCGTGAACTAGCTCGTGCGAAGGTTTCGGCAAATAGAGTTGCAGTAGTGGTGGCAAATGAATGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAACAATGGTTAGAAGAACGGAGGATTTTACAA GGAGAAATGCAGCAACTCCGGGATAAACTGGCTATAGCAGAAAGGGCCGCACGATCAGAAGCTCAATTGAAAGATAAGTTCCAGCTACGGCTTAAAGTACTTGAGGAAGGTTTGAGAATGTCAACGACTCGAACCAATGTTAGTGCAGCACGCCGCCAGTCTATTGGTGGTGCTGATAGTTTATCCAAGACCAATGGGTTCCTATCAAAACGGCCATCATTCCAGATGAGATCGTCAGTATCTA CCACCACAACTACTCTGGTCAACCATGCAAAAGGGGCATCAAAGTCTTTTGACGGAGGCTGTAGATCACTTGACCGTTACAAGGGACATGTAAACGGGTCTGGTATGAATGTATCTACGGACTCCAGTGAAGATAAGGAATCAAACAACTCAGATGAGAAGGCTAACGAATTTACATCAGTTGAGACAGAGGATACGGTATCAGGTTTGCTGTATGATACGCTGCAAAAGGAGGTAATTGCTCTAAGGAAGGCTTGCCATGAAAAGGACCAAAGCCTGAAAGACAAGGACGATGCAGTTGAGATGCTAGCAAAGAAAGTAGACACATTGACAAAGGCAATGGAATCAGAGGGTAAAAAAAGGAGGATGGAGGTAGCTGCCATGGAAAAGGAGATGGCGGCTTTGCGGTTGGAGAAAGAGCAGGATAACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGGACATTGCCTC GGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAACACGGCGGCAACCAGCCAACCCTTACGAAGCATTCAAATAAGAGGAGAGCTTAATTGGGTGCTTCGACATCATATCCTTGTCTAGTTGTTGAATGTTGGATTAGTAGTGATGACGAGCTGCTGATTGATGTCTGGAGAAGATGGATCGATCGGTTACATTTTTACACGTCGAGCCGAGAAGACGGAGCGATTAGCCTATATCTCGTGGGAATCGCGACGACTACTCTGTCTAATTAACCTGGCAAATTAAGCTAGTCTTATTTTTAACCTTTGGTTTCTTGATGAGATTTGGTGGTGTG TTTTTTTTTGGCAATCATCCATCATCGTTGCCTGGTGCTGTATAGGTTTGGTGAGCCCATGCATGCATATTTTTAGTCTCAAATTTGTTTGTAATCTTAATACTAAAGAGGATCGGATGAT TATATATATATATA ] [+] EMBL AY224566 [ CCATACGGCGACGGCAAGGGCCTCAAGCAGCAGCAGCGCCAGAAGCTCAAGCCCGCGCTCGAGGTGGAGGACTTCATCAACCTCCTCCACGGCTCCGATCCCGTCCGAGTCGAGCTCACCCGCCTCGAGAACGAGCTCCAGTATAAGGAGAAGGAGCTTGGGGAGGCGCAGGCTGAGATCAAGGCTCTGCGGCTGTCCGAGCGAGCGCGCGAGAAGGCCGTCGAGGATCTTACGGAAGAATTGACAAAGGTGGATGGGAAGCTGAAGCTTACAGAGTCTCTCCTCGAAAGCAAGAACCTTGAGGCAAAGAAGATAAACGATGAAAAGAAAGCAGCACTTGCAGCCCAATTTGCAGCAGAGGCTACACTTCGAAGGGTTCATGCAGCACAGAAGGATGATGACATGCCCCCTATTGAGGCCATTCTTGCGCCATTGGAAGCTGAACTGAAACTAGCTCGTCATGAGATCGCAAAACTACAAGATGACAACAGGGCATTGGACCGCCTTACTAAGTCCAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACGGTTCAGATAGCATTAGCAAAAGCTTCTTTGGTTGATGATTTGCAAAACAAAAACCAAGAATTGATGAAACAGATCGAGATCTGTCAGGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAAAAAGTAGCTGAGGTTGAGAAGCTCACTCAGACTGTCAGAGAGCTCGAAGAAGCTGTTCTTGCTGGAGGTGCAGCTGCAAATGCTGTGAGAGACTATCAGCGCAAAGTCCAGGAGATGAATGAAGAAAGGAAAACTCTTGATCGTGAACTAGCTCGTGCGAAGGTTTCGGCAAATAGAGTTGCAGTAGTGGTGGCAAATGAATGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAACAATGGTTAGAAGAACGGAGGATTTTACAA GGAGAAATGCAGCAACTCCGGGATAAACTGGCTATAGCAGAAAGGGCCGCACGATCAGAAGCTCAATTGAAAGATAAGTTCCAGCTACGGCTTAAAGTACTTGAGGAAGGTTTGAGAATGTCAACGACTCGAACCAATGTTAGTGCAGCACGCCGCCAGTCTATTGGTGGTGCTGATAGTTTATCCAAGACCAATGGGTTCCTATCAAAACGGCCATCATTCCAGATGAGATCGTCAGTATCTACCCACCAC ACTACTCTGGTCAACCATGCAAAAGGGGCATCAAAGTCCTTTGACGGAGGCTGTAGATCACTTGACCGTTACAAGGGACATGTAAACGGGTCTGGTATGAATGTATCTACGGACTCCAGTGAAGATAAGGAATMAAACAACTCAGAT AGAAGGCT ] [+] EMBL AF074746 [ GTTGCAGTAGTGGTGGCAAATGAATGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAACAATGGTTAGAAGAACGGAGGATTTTACAAGGGAGAAATGCAGCAACTCCGGGATAAACTGGCTATAGCAGAAAGGGCCGCACGATCAGAAGCTCAATTGAAAGATAAGTTCCAGCTACGGCTTAAAGTACTTGAGGAAGGTTTGAGAATGTCAACGACTCGAACCAATGTTAGTGCAGCACGCCGCCAGTCTATTGGTGGTGCTGATAGTTTATCCAAGACCAATGGGTTCCTATCAAAACGGCCATCATTCCAGATGANATCGTCAGTATCTA CCACCACAACTACTCTGGTCAACCATGCAAAAGGGGCATCAAAGTCTTTTGACGGAGGCTGTAGATCACTTGACCGTTACAAGGGACATGTNAACGGGTCTGGTATGAATGTNTCTACGGACTCCAGTGAAGATAAGGAATCAAACAACTCAGATGANAA GCTAACGAATTTACATCNGTTGAGACAGAAGATACNGTNTCAGGTTTGCTGTATGATACGCTGCAAAAGGAAGTAATTGCTCTAANGAA GCTTGCCATGAAAAGGACCAAAGCCTG ] [-] EMBL CB676335 [ GCAAAAGGAGGTAATTGCTCTAAGGAAGGCTTGCCATGAAAAGGACCAAAGCCTGAAAGACAAGGACGATGCAGTTGAGATGCTAGCAAAGAAAGTAGACACATTGACAAAGGCAATGGAATCAGAGGGTAAAAAAAGGAGGATGGAGGTAGCTGCCATGGAAAAGGAGATGGCGGCTTTGCGGTTGGAGAAAGAGCAGGATAACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGGACATTGCCTC GGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAACACGGCGGCAACCAGCCAACCCTTACGAAGCATTCAAATAAGAGGAGAGCTTAATTGGGTGCTTCGACATCATATCCTTGTCTAGTTGTTGAATGTTGGATTAGTAGTGATGACGAGCTGCTGATTGATGTCTGGAGAAGATGGATCGATCGGTTACATTTTTACACGTCGAGCCGAGAAGACGGAGCGATTAGCCTATATCTCGTGGGAATCGCGACGACTACTCTGTCTAATTAACCTGGCAAATTAAGCTAGTCTTATTTTTAACCTTTGGTTTCTTGATGAGATTTGGTGGTGTG TTTTTTTTTGGCAATCATCCATCATCGTTGCCTGGTGCTGTATAGGTTTGGTGAGCCCATGCATGCATATTTTTAGTCTCAAATTTGTTTGTAATCTTAATACTAAAGAGGATCGGATGAT TATATATATATATATATGCTGGCCATATATAAAGATTGAGTTTCCTG] [+] EMBL BM419533 [ CTCGGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAACACGGCGGCAACCAGCCAACCCTTACGAAGCATTCAAATAAGAGGAGAGCTTAATTGGGTGCTTCGACATCATATCCTTGTCTAGTTGTTGAATGTTGGATTAGTAGTGATGACGAGCTGCTGATTGATGTCTGGAGAAGATGGATCGATCGGTTACATTTTTACACGTCGAGCCGAGAAGACGGAGCGATTAGCCTATATCTCGTGGGAATCGCGACGACTACTCTGTCTAATTAACCTGGCAAATTAAGCTAGTCTTATTTTTAACCTTTGGTTTCTTGATGAGATTTGGTGGTGTGTTTTTTTTTTTGGCAATCATCCATCATCGTTGCCTGGTGCTGTATAGGTTTGGTGAGCCCATGCATGCATATTTTTAGTTTCAAATTTGTTTGTAATCTTAATACTAAAGAGGATCGGATGATTATATATATATATATATATGCTGGCCATATATAAAaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||