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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1707 fasta sequence
[CACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG-GCTNCGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTNGGGGCGCTNCGGAGGTCGCTGGTGATGTNCAGCGCCGGGAAGGTCGGGGAGGAGGAGGACAGCGAGGACGAGGAAGAGGAGGGGATGGAGATCGGGCGGCCCACGGACGTGCGGCACGTCTCCCACGTCACCTTCGACCGCTTCGGCGGCTTCCTCGGCCTCCCCGCCGACCTCGAGCCCGAAGTTCCCAGCCCCACGCCCAGCGCCAGTGTAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATAGCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGATCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAACTAAACAGTGGTGTGGTTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGGCATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGCATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCGCATTACTCGATTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCCTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGGTTGTTGTGTGCATTATAACCATTTACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAAGTAAACGAAAGCCAGCTGAATTCTGGC]
[+] EMBL OSS13437A [CACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG GCTNCGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGNTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTNGGGGCGCTNCGGAGGTCGCTGGTGATGTNCAGCG ]
[+] EMBL OSS12565A [ ACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG NCTACGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCNACGACGGGACGGACTCGNCGCCGCCGCTGATGATGCAGGNGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTNGTNGGNGCGCTGCGGAGGTCGCTGGTGATGTTCAG TCCGGGAA ]
[+] EMBL OSS12673A [ ACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG GCTNCGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTGGGGGCGCTNCGGAGGTCG ]
[+] EMBL AK101984 [ CGCAGTCCGCACCCGCGCGCGCGCGCT CGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTGGGGGCGCTGCGGAGGTCGCTGGTGATGTGCAGCGCCGGGAAGGTCGGGGAGGAGGAGGACAGCGAGGACGAGGAAGAGGAGGGGATGGAGATCGGGCGGCCCACGGACGTGCGGCACGTCTCCCACGTCACCTTCGACCGCTTCGGCGGCTTCCTCGGCCTCCCCGCCGACCTCGAGCCCGAAGTTCCCAGCCCCACGCCCAGCGCCAGTGTAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATAGCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGATCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAACTAAACAGTGGTGTGGTTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGGCATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGCATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCGCATTACTCGATTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCCTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGGTTGTTGTGTGCATTATAACCATTTACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAAGTAAACGAAAGCCAGCTGAATTCTGGC]
[+] EMBL CF197194 [ GCCAGTGTAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATAGCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGATCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAACTAAACAGTGGTGTGATTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGGCATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGCATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCGCATTACTCGATTGGGCTACCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCCTGATACATGCAGTTCANNTCATGAATTTCnnnnnn ]
consensusID : consensus_9332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCNTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTAAAAAAAAAAAAAAAAA]
[-] EMBL CA763144 [CGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCNTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9332#0 CACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCGGCTNCGACT 60
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 CCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCT 120
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 CGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGG 180
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 AGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGG 240
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 GAGGGGGAGGGCTGGTCGGGGCGGTGGTNGGGGCGCTNCGGAGGTCGCTGGTGATGTNCA 300
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 GCGCCGGGAAGGTCGGGGAGGAGGAGGACAGCGAGGACGAGGAAGAGGAGGGGATGGAGA 360
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 TCGGGCGGCCCACGGACGTGCGGCACGTCTCCCACGTCACCTTCGACCGCTTCGGCGGCT 420
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 TCCTCGGCCTCCCCGCCGACCTCGAGCCCGAAGTTCCCAGCCCCACGCCCAGCGCCAGTG 480
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 TAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATA 540
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 GCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGA 600
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 TCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAAC 660
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 TAAACAGTGGTGTGGTTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGG 720
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 CATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGC 780
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 ATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCG 840
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 CATTACTCGATTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACA 900
consensus_9332#1 ------------------------------------------------------------
consensus_9332#0 AGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATC 960
consensus_9332#1 ---------------------------------CGCCAAACATGACTCAGATGGCCGATC 27
***************************
consensus_9332#0 CATTGACTGCCCTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGA 1020
consensus_9332#1 CATTGACTGCCNTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGA 87
*********** ************************************************
consensus_9332#0 AGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTT 1080
consensus_9332#1 AGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTT 147
************************************************************
consensus_9332#0 CTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTT 1140
consensus_9332#1 CTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTT 207
************************************************************
consensus_9332#0 CAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGT 1200
consensus_9332#1 CAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGT 267
************************************************************
consensus_9332#0 TTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGC 1260
consensus_9332#1 TTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGC 327
************************************************************
consensus_9332#0 ATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATA 1320
consensus_9332#1 ATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATA 387
************************************************************
consensus_9332#0 ACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACA 1380
consensus_9332#1 ACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACA 447
************************************************************
consensus_9332#0 AATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTA 1440
consensus_9332#1 AATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTA 507
************************************************************
consensus_9332#0 GGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAG 1500
consensus_9332#1 GGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAG 567
************************************************************
consensus_9332#0 CTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTT 1560
consensus_9332#1 CTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTT 627
************************************************************
consensus_9332#0 TCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGG 1620
consensus_9332#1 TCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTAAAAAAAAAAAAAA 687
*********************************************** * *
consensus_9332#0 TTGTTGTGTGCATTATAACCATTTACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAA 1680
consensus_9332#1 AAA--------------------------------------------------------- 690
consensus_9332#0 GTAAACGAAAGCCAGCTGAATTCTGGC 1707
consensus_9332#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||