These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 665 fasta sequence [TTTTTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGCAGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCAAAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGTCG-GCTCCTCCTCCTCCTCGTCTG-ATACTCGTCGCGGGTCTCATCATCATCCTTGGGGGGTGCAGTGGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAAAATTATAAGCGCTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTGAGCTGGGCTTGTTGGG] [-] EMBL BI795350 [TTTTTTTTGAAGAAACAAGGGTCAGAGAGTCCTTCAATTCAAGAACGTC TTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTG TTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGCAGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCAAAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGTCG GCTCCTCCTCCTCCTCGTCTG ATACTCGTCGCGGGTCTCATCATCATCCTTGGGGGGTGCAGTG ] [-] EMBL AU085776 [ TTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGNAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGT ] [+] EMBL CB673775 [ ATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGCAGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCAAAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACA GGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAAAATTATAAGCGCTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTGAGCTGGGCTTGTTGGG] [+] EMBL AI978341 [ AAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCNANGATTTNNNNCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGNCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTNTGATATGCTCGNCTCGAGCAGGTGTGATCTT ] consensusID : consensus_9333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence [TAACGATTGCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTATGCCCTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCTCGAAGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAACAAGATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTTGTTGGGCTTGTTGGTACTGTTGGG] [-] EMBL AU063111 [TAACGATTGCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTATGCCCTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCTCGAAGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAACAAGATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTTGTTGGGCTTGTTGGTACTGTTGGG] [-] EMBL AI978340 [ tgttnnntATGCTCGGCT NNNNNAGGTGTGATCTTCACGNNNTNNCCATGGTA CCACCGCTCGCAACTATCACAAC AGATCCAAAACTCATCTTTG CCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCGTCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTTGTTGGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9333#0 TTTTTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATG 60 consensus_9333#1 ------------------------------------------------------------ consensus_9333#0 TCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTT 120 consensus_9333#1 ------------------------------------------------------------ consensus_9333#0 TAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTT 180 consensus_9333#1 ------------------------------------------------------------ consensus_9333#0 TTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACAT 240 consensus_9333#1 ------------------------------------------------------------ consensus_9333#0 CTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCT-GCTTGTTTGTGCTTGTCTCT-AT 298 consensus_9333#1 --TAACGATT-GCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTAT 57 ******* * *********************** ******************** ** consensus_9333#0 GCCCTTGCCCTCTTGTTGCCGCAATCTGGGCA-CTTGTA-GTGTTTGATA-TGCTCGGCT 355 consensus_9333#1 GCCCTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCT 117 ********************* ********** ****** ********** ********* consensus_9333#0 CGA-GCAGGTGTGATCTTCACGCACTTTCCATGGTACC-ACCGCTCGCAACTATCACAAC 413 consensus_9333#1 CGAAGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAAC 177 *** ************** ******************* ********************* consensus_9333#0 A-GATCCAAAACTCATCTTTGCC-ATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGT 471 consensus_9333#1 AAGATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGG-TGTTGT 236 * ********************* ***************************** ****** consensus_9333#0 CG-GCTCCTCCTCCTCCTCGTCTG-ATACTCGTCGCGGGTCTCATCATCATCCTTGGGGG 529 consensus_9333#1 CGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGG 296 ** ********************* ****** **** * ********************* consensus_9333#0 GTGCAGTGGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAA 589 consensus_9333#1 GTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGG 356 ****** *************************************** ** consensus_9333#0 AATTATAAGCGCTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTG 649 consensus_9333#1 GCTTGTTGGGCTTGT-TGGTACTGTTGGG------------------------------- 384 ** * * *** * ** * ** consensus_9333#0 AGCTGGGCTTGTTGGG 665 consensus_9333#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||