These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1003 fasta sequence [GAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGATCTTCTCTAAGGTTTTTTTTTTTTTTTTTCGTGTATCTTGCTTGCAAATTGTGTCACTTTTTCCCTAAAACAGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTGAAGTGATAAAATAAAAATGCATCCTCATATTCACTGTACTCCTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTATGTAATCATGTTTGTGAACACTCCAAATATTAACAAGCACTGTTTTGGCTTCAGTAACTGTTGCATTTCCGTTACACATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCNNNANAAAAAAAAAAAAAAAAAAAAAAAAANAANANAANNNANNNNNNNNNAAAANANAAAAAANAAAANNAAACCAAAAANAAAANAAAAAAANNNNCCNAAAANNNACANNAAAAACCGGGGGGGGGGGAAGAGAACCCCGGNNGCCCCAAAAGGGGGAGAGAAAACGCGCCCCCCCGCCCCGCGCNGCCCAAAGGGGGGGGGAGGAGAAACCCGGGGGGCCCCCCCAACCAAAGCCCGGACAAAAAAACCCCTGTNACGGGGCGGGAAAAAAAAAAAAAGCACCGCGGGGGGGCGGTCCAAACANGGGGCGCCCAGAATGGG] [-] EMBL CB685720 [GAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGATCTTCTCTAAGGTTTTTTTTTTTTTTTTTCGTGTATCTTGCTTGCAAATTGTGTCACTTTTTCCCTAAAACAGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTGAAGTGATAAAATAAAAATGCATCCTCATATTCACTGTACTCCTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTATGTAATCATGTTTGTGAACACTCCAAATATTAACAAGCACTGTTTTGGCTTCAGTAACTGTTGCATTTCCGTTACACATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAAAGGGTTGCGAAAATTGAAAATAGGTGTATATGTTTT ] [+] EMBL CB685719 [ agcccttGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGATCTTCTCTAAGGTTTTTTTTTTTTTTTTTCGTGTATCTTGCTTGCAAATTGTGTCACTTTTTCCCTAAAACAGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTGAAGTGATAAAATAAAAATGCATCCTCATATTCACTGTACTCCTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTATGTAATCATGTTTGTGAACACTCCAAATATTAACAAGCACTGTTTTGGCTTCAGTAACTGTTGCATTTCCGTTACACATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTA ] [+] EMBL CA754919 [ GATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAANATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCNNNANAAAAAAAAAAAAAAAAAAAAAAAAANAANANAANNNANNNNNNNNNAAAANANAAAAAANAAAANNAAACCAAAAANAAAANAAAAAAANNNNCCNAAAANNNACANNAAAAACCGGGGGGGGGGGAAGAGAACCCCGGNNGCCCCAAAAGGGGGAGAGAAAACGCGCCCCCCCGCCCCGCGCNGCCCAAAGGGGGGGGGAGGAGAAACCCGGGGGGCCCCCCCAACCAAAGCCCGGACAAAAAAACCCCTGTNACGGGGCGGGAAAAAAAAAAAAAGCACCGCGGGGGGGCGGTCCAAACANGGGGCGCCCAGAATGGG] consensusID : consensus_9334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 944 fasta sequence [CTCGTCTTCTTCCTTCCGCTCGCTCGCTCGCTCGCTGACGTGTACGCTTCGCGGCGGAGGCGGCGGCGGCGGCTTCCGATGGCGGAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTGGGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTCAAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGAATTCATGAAGGTTAATCCTATGAAGTTCGTCCCGGCATTGGTCGATGGAGATGCTGTAATTGGTGATTCTTACGCGATAGCATTATATTTGGAGGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGGTAAGAACTGATTTGCATTCAATTTCTTACTGCCATAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCAAATAAATGACCCTTAAA] [+] EMBL AK073086 [CTCGTCTTCTTCCTTCCGCTCGCTCGCTCGCTCGCTGACGTGTACGCTTCGCGGCGGAGGCGGCGGCGGCGGCTTCCGATGGCGGAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTGGGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTCAAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGAATTCATGAAGGTTAATCCTATGAAGTTCGTCCCGGCATTGGTCGATGGAGATGCTGTAATTGGTGATTCTTACGCGATAGCATTATATTTGGAGGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGGTAAGAACTGATTTGCATTCAATTTCTTACTGCCATAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCAAATAAATGACCCTTAAA] consensusID : consensus_9334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCAT-CGCCCTCAACCTC-AAAGGATT-GGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGTATTTGGAGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAAAAAAAAAAAAA] [+] EMBL OSA486976 [GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCAT CGCCCTCAACCTC AAAGGATT GGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGTATTTGGAGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAAAAAA ] [+] EMBL AT003391 [ gGCATNGGCCCTCANCCTCAAAAGGATTGGGAGTNCGAGTNCAAGCCGGTGANCCTGCTCAAGGGGGAGCCCTCTGATCCAGTATTTGGAGNCAAGTACCNTGAGCACCCTCTTTTACCTCAAGCCCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTCCCGTACTGAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCCCCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9334#1 CTCGTCTTCTTCCTTCCGCTCGCTCGCTCGCTCGCTGACGTGTACGCTTCGCGGCGGAGG 60 consensus_9334#2 ------------------------------------------------------------ consensus_9334#0 ------------------------------------------------------------ consensus_9334#1 CGGCGGCGGCGGCTTCCGATGGCGGAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTG 120 consensus_9334#2 ------------------------------------------------------------ consensus_9334#0 ------------------------------------------------------------ consensus_9334#1 GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTC 180 consensus_9334#2 GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTC 60 consensus_9334#0 -----GAGAACCTAGTAA--AAGGCTGTGCTGGGAA-GTATGCAACAGGAGATGAAGTCC 52 * * ** * ** ***** * * * * * * * ** * consensus_9334#1 AAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCA 240 consensus_9334#2 AAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCA 120 consensus_9334#0 GATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGA--TCTTCTCTA 110 * * * * * * ** * * *** **** *** ** * consensus_9334#1 GAATTCATGAAGGTTAATCCTATGAAGTTCGTCCCGGCATTGGTCGATGGAGATGCTGTA 300 consensus_9334#2 G----------------------------------------------------------- 121 consensus_9334#0 AGGTTTTTTTTTTTTTTTTTCGTG------------------------------------ 134 consensus_9334#1 ATTGGTGATTCTTACGCGATAGCATTATATTTGGAGGACAAGTACCCTGAGCACCCTCTT 360 consensus_9334#2 ---------------------------TATTTGGAG-ACAAGTACCCTGAGCACCCTCTT 153 consensus_9334#0 ---------------------------TATCTTGCTTGCAAAT----TGTGT---CACTT 160 *** * * *** * ** * * *** consensus_9334#1 TTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCT 420 consensus_9334#2 TTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCT 213 consensus_9334#0 TTTCCCTAAAAC---AGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTG-AAGTGAT 216 ** ** ** ** * * ***** ** ** * * * ** ** * ** * * * consensus_9334#1 GGAATTCAACCTCTTCACAATCTT-ACCGTACTGGTAAGAACTGATTTGCATTCAATTTC 479 consensus_9334#2 GGAATTCAACCTCTTCACAATCTT-ACCGTACTG-------------------------- 246 consensus_9334#0 AAAATAAAAATGCATCCTCATATTCACTGTACTC-------------------------- 250 *** ** * ** ** ** ** ***** consensus_9334#1 TTACTGCCATAGGTTCATTGAGAAGA-AGGTTGGTACAGGGGAGAGCATCCCATGGACTC 538 consensus_9334#2 ----------AGGTTCATTGAGAAGA-AGGTTGGTACAGGGGAGAGCATCCCATGGACTC 295 consensus_9334#0 -------------CTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTAT 297 **** * * ** *** * * ** ** consensus_9334#1 AACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGA 598 consensus_9334#2 AACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGA 355 consensus_9334#0 GTAATCATGTTTGTGAACACTCC--AAATATTAACAAGCACTGTTTTGGCT---TCAGTA 352 * ** * * * * * * * * ** * **** * * consensus_9334#1 AGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATG 658 consensus_9334#2 AGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATG 415 consensus_9334#0 ACTGTTGCATTTCCGTTACA--CATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATG 410 * * * * * * * * ******************************** consensus_9334#1 CAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATG 718 consensus_9334#2 CAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATG 475 consensus_9334#0 CAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATG 470 ************************************************************ consensus_9334#1 AGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCC 778 consensus_9334#2 AGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCC 535 consensus_9334#0 AGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCC 530 ************************************************************ consensus_9334#1 CTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACC 838 consensus_9334#2 CTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACC 595 consensus_9334#0 CTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACC 590 ************************************************************ consensus_9334#1 CAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAG 898 consensus_9334#2 CAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAG 655 consensus_9334#0 CAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAG 650 ************************************************************ consensus_9334#1 GTGTATATGTTTTTCAAAGCTTCTGTCCAAATAAATGACCCTTAAA-------------- 944 consensus_9334#2 GTGTATATGTTTTTCAAAA-----AAAAAAAAAAA------------------------- 685 consensus_9334#0 GTGTATATGTTTTTCAAAGCTTCTGTCCNNNANAAAAAAAAAAAAAAAAAAAAAAAAANA 710 ****************** ** consensus_9334#1 ------------------------------------------------------------ consensus_9334#2 ------------------------------------------------------------ consensus_9334#0 ANANAANNNANNNNNNNNNAAAANANAAAAAANAAAANNAAACCAAAAANAAAANAAAAA 770 consensus_9334#1 ------------------------------------------------------------ consensus_9334#2 ------------------------------------------------------------ consensus_9334#0 AANNNNCCNAAAANNNACANNAAAAACCGGGGGGGGGGGAAGAGAACCCCGGNNGCCCCA 830 consensus_9334#1 ------------------------------------------------------------ consensus_9334#2 ------------------------------------------------------------ consensus_9334#0 AAAGGGGGAGAGAAAACGCGCCCCCCCGCCCCGCGCNGCCCAAAGGGGGGGGGAGGAGAA 890 consensus_9334#1 ------------------------------------------------------------ consensus_9334#2 ------------------------------------------------------------ consensus_9334#0 ACCCGGGGGGCCCCCCCAACCAAAGCCCGGACAAAAAAACCCCTGTNACGGGGCGGGAAA 950 consensus_9334#1 ----------------------------------------------------- consensus_9334#2 ----------------------------------------------------- consensus_9334#0 AAAAAAAAAAGCACCGCGGGGGGGCGGTCCAAACANGGGGCGCCCAGAATGGG 1003 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||