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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1110 fasta sequence
[CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGACCACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTCGTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT-GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGC-TGTTCCTGTACAGAGGCCACGCCGA-CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA]
[+] EMBL CF306483 [CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGACCACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTCGTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCC ]
[+] EMBL C74035 [ TTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTTGTTCCTGTACAGAGGCCACG CGACCGAGGACAACCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTNCGCGACCATGGCGAGC ]
[+] EMBL AU029348 [ nTTACAGAACAGNTTAGAGTCCCTGTTGGGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGA NTTTTGTTGGCACTGCAGTCCNTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTNCGACGAAGAGATTGGGC TGTTCCTGTACAGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACT GGNTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA]
[+] EMBL CA757024 [ ATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGC TGTTCCTGTACAGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGTCAGCTGTGGCGCGCCACCGTCGACGCCAAGGCGCTCATCGCCATCGCCCTGTACG ]
[+] EMBL AU173233 [ AGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGCCGTCGTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACNCCGTCAaaaaaaaaa ]
consensusID : consensus_9338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATTGGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTTCATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAACCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTCATTGA]
[+] EMBL CF303615 [GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATTGGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTTCATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAACCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTCATTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9338#0 CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGAC 60
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 CACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTC 120
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 GTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTC 180
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 AGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC 240
consensus_9338#1 -----------------------GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC 37
*************************************
consensus_9338#0 CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG 300
consensus_9338#1 CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG 97
************************************************************
consensus_9338#0 TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTAT-TTGC 359
consensus_9338#1 TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGT-----GATTTTTATGTTGC 152
*************************************** * ** ** *** ****
consensus_9338#0 AAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGT 419
consensus_9338#1 T-----GCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTT--GGATAATCTGCAGCTTG 205
*** * * *** * ** * ** * ** ** ** ** ***
consensus_9338#0 TCTTACAGAACAGGTTAGAGTTCCTGTTGGAAAATTTATATTGGAACTACCTGCTGGGAT 479
consensus_9338#1 CTCTAC---------TAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATT-----ACAT 251
*** **** ** * **** ** * *** * **
consensus_9338#0 GCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAAC 539
consensus_9338#1 CTTAGATAGTCTGCTGATT-ACTCTACTGGAATGAGTATCCTTGAAAATTG-GTTGCTAC 309
**** * * * * * *** * *** *** * * * **
consensus_9338#0 TGGAATTAAGCTAAAT-TTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACA 598
consensus_9338#1 TGAAACTGATATGAATATCTCAAGTTTTGCTTG---TTAC-AAATAGATGTTCTTCATC- 364
** ** * * * *** * * * * ** *** **** ** * ** * *
consensus_9338#0 CTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGT 658
consensus_9338#1 -----TGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATA 419
** * *** ** * * * * *** * * * *
consensus_9338#0 ACAGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGC 718
consensus_9338#1 ACCATAGTCTC-CACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCAC 478
** * * * * ***** * * *** * ** * * *
consensus_9338#0 GCGACCATGGCGAGCT-GATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCC 777
consensus_9338#1 AAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGT-GTCTATGTATATGTTTCGTGAA 537
* * * * * * * * ** ** * * *** ** *
consensus_9338#0 ACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGC 837
consensus_9338#1 TTCATTGA---------------------------------------------------- 545
* **
consensus_9338#0 CTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTG 897
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 TAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAG 957
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 AGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAA 1017
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 TGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACAC 1077
consensus_9338#1 ------------------------------------------------------------
consensus_9338#0 CGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA 1110
consensus_9338#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||