These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1110 fasta sequence [CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGACCACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTCGTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT-GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGC-TGTTCCTGTACAGAGGCCACGCCGA-CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA] [+] EMBL CF306483 [CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGACCACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTCGTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCC ] [+] EMBL C74035 [ TTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTTGTTCCTGTACAGAGGCCACG CGACCGAGGACAACCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTNCGCGACCATGGCGAGC ] [+] EMBL AU029348 [ nTTACAGAACAGNTTAGAGTCCCTGTTGGGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGA NTTTTGTTGGCACTGCAGTCCNTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTNCGACGAAGAGATTGGGC TGTTCCTGTACAGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACT GGNTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA] [+] EMBL CA757024 [ ATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGC TGTTCCTGTACAGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGTCAGCTGTGGCGCGCCACCGTCGACGCCAAGGCGCTCATCGCCATCGCCCTGTACG ] [+] EMBL AU173233 [ AGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGCCGTCGTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACNCCGTCAaaaaaaaaa ] consensusID : consensus_9338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATTGGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTTCATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAACCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTCATTGA] [+] EMBL CF303615 [GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATTGGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTTCATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAACCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTCATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9338#0 CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGAC 60 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 CACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTC 120 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 GTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTC 180 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 AGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC 240 consensus_9338#1 -----------------------GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC 37 ************************************* consensus_9338#0 CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG 300 consensus_9338#1 CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG 97 ************************************************************ consensus_9338#0 TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTAT-TTGC 359 consensus_9338#1 TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGT-----GATTTTTATGTTGC 152 *************************************** * ** ** *** **** consensus_9338#0 AAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGT 419 consensus_9338#1 T-----GCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTT--GGATAATCTGCAGCTTG 205 *** * * *** * ** * ** * ** ** ** ** *** consensus_9338#0 TCTTACAGAACAGGTTAGAGTTCCTGTTGGAAAATTTATATTGGAACTACCTGCTGGGAT 479 consensus_9338#1 CTCTAC---------TAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATT-----ACAT 251 *** **** ** * **** ** * *** * ** consensus_9338#0 GCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAAC 539 consensus_9338#1 CTTAGATAGTCTGCTGATT-ACTCTACTGGAATGAGTATCCTTGAAAATTG-GTTGCTAC 309 **** * * * * * *** * *** *** * * * ** consensus_9338#0 TGGAATTAAGCTAAAT-TTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACA 598 consensus_9338#1 TGAAACTGATATGAATATCTCAAGTTTTGCTTG---TTAC-AAATAGATGTTCTTCATC- 364 ** ** * * * *** * * * * ** *** **** ** * ** * * consensus_9338#0 CTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGT 658 consensus_9338#1 -----TGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATA 419 ** * *** ** * * * * *** * * * * consensus_9338#0 ACAGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGC 718 consensus_9338#1 ACCATAGTCTC-CACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCAC 478 ** * * * * ***** * * *** * ** * * * consensus_9338#0 GCGACCATGGCGAGCT-GATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCC 777 consensus_9338#1 AAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGT-GTCTATGTATATGTTTCGTGAA 537 * * * * * * * * ** ** * * *** ** * consensus_9338#0 ACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGC 837 consensus_9338#1 TTCATTGA---------------------------------------------------- 545 * ** consensus_9338#0 CTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTG 897 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 TAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAG 957 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 AGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAA 1017 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 TGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACAC 1077 consensus_9338#1 ------------------------------------------------------------ consensus_9338#0 CGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA 1110 consensus_9338#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||