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Oryza sativa
cluster # 9338 cluster # 9338       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9338#0 length = 1110 sequences # 5  
consensus_9338#1 length = 545 sequences # 1  

consensusID : consensus_9338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1110
fasta sequence
                              [CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGACCACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTCGTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT-GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGC-TGTTCCTGTACAGAGGCCACGCCGA-CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA]

[+] EMBL CF306483             [CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGACCACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTCGTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTCAGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C74035               [                                                                                                                                                                                                                                                                                                                                                                  TTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGGTTAGAGTTCCTGTT GGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTTGTTCCTGTACAGAGGCCACG CGACCGAGGACAACCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTNCGCGACCATGGCGAGC                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU029348             [                                                                                                                                                                                                                                                                                                                                                                                                                                    nTTACAGAACAGNTTAGAGTCCCTGTTGGGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGA NTTTTGTTGGCACTGCAGTCCNTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTNCGACGAAGAGATTGGGC TGTTCCTGTACAGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACT GGNTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA]
[+] EMBL CA757024             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGC TGTTCCTGTACAGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGTCAGCTGTGGCGCGCCACCGTCGACGCCAAGGCGCTCATCGCCATCGCCCTGTACG                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU173233             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGAGGCCACGCCGA CGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTCCTGCCGTCGTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACNCCGTCAaaaaaaaaa                   ]


>consensus_9338#0 CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGAC CACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTC GTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTC AGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTATTTGCA AGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTT CTTACAGAACAGGTTAGAGTTCCTGTTGGAAAATTTATATTGGAACTACCTGCTGGGATG CTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACT GGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACACT GGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTAC AGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGC GACCATGGCGAGCTGATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACC GCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGCCTC CTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAA GAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGC GAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAATGA CTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACACCGT CAGTCACGCGGCAAAAAAAAAAAAAAAAAA



consensusID : consensus_9338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATTGGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTTCATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAACCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTCATTGA]

[+] EMBL CF303615             [GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATTGGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTTCATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAACCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTCATTGA]


>consensus_9338#1 GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAACCTGAGGCAAATCCTCATCCAGGG GGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAGTTCAAGGCTGACATCATCGACGA GGAGACCAAAGCCAAGGTGATTTTTATGTTGCTGCCGCCGTTCCCTGCTCTCTTTTTATT AAAACCTTGGATAATCTGCAGCTTGCTCTACTAGAAATCTAGAAGGAAGATCCCTGAAAA AACGATTACATCTTAGATAGTCTGCTGATTACTCTACTGGAATGAGTATCCTTGAAAATT GGTTGCTACTGAAACTGATATGAATATCTCAAGTTTTGCTTGTTACAAATAGATGTTCTT CATCTGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATAA CCATAGTCTCCACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCACAA AATGGTTATGGTTTCAAATGAATTTTTTGGACTGTGTCTATGTATATGTTTCGTGAATTC ATTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9338#0      CGCGCTCCCTCTCCCGCTCCGTCCAGCCGCCGCGGCGCGCGCATGGCCTCGTCCGGCGAC 60
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      CACGCGCCGCAGCTCAGCACCGCCGTCGCGGTGCCCGGCGCGGGCGCGCCCGTCCGCGTC 120
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      GTGGCCGCGCCGGGCCTCACCGAGGCGGATTTCACGAGCGCGGTGGAATCCTCGCTGTTC 180
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      AGGCAGTGGCTGAAGAACCTGCAGGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC 240
consensus_9338#1      -----------------------GGAGGAGAAGGGGGTCCTCACCTACGGGAGGCTGAAC 37
                                             *************************************

consensus_9338#0      CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG 300
consensus_9338#1      CTGAGGCAAATCCTCATCCAGGGGGTTGACATGTTTGGGAAACGCGTGGGGTTTGTCAAG 97
                      ************************************************************

consensus_9338#0      TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGATTCCAGGAATTGTAT-TTGC 359
consensus_9338#1      TTCAAGGCTGACATCATCGACGAGGAGACCAAAGCCAAGGT-----GATTTTTATGTTGC 152
                      *************************************** *     ** ** *** ****

consensus_9338#0      AAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGT 419
consensus_9338#1      T-----GCCGCCGTTCCCTGCTCTCTTTTTATTAAAACCTT--GGATAATCTGCAGCTTG 205
                            ***  *  *  ***   *  ** * **  *  **   **  ** **   ***  

consensus_9338#0      TCTTACAGAACAGGTTAGAGTTCCTGTTGGAAAATTTATATTGGAACTACCTGCTGGGAT 479
consensus_9338#1      CTCTAC---------TAGAAATCTAGAAGGAAGATCCCTGAAAAAACGATT-----ACAT 251
                         ***         ****  **  *  **** **   *     *** *         **

consensus_9338#0      GCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAAC 539
consensus_9338#1      CTTAGATAGTCTGCTGATT-ACTCTACTGGAATGAGTATCCTTGAAAATTG-GTTGCTAC 309
                        ****   *     *    * * *  *** *      *** ***   *   *  *  **

consensus_9338#0      TGGAATTAAGCTAAAT-TTAGAGGATATGATTGACCTTACTGCATTGCTGAACCCTGACA 598
consensus_9338#1      TGAAACTGATATGAATATCTCAAGTTTTGCTTG---TTAC-AAATAGATGTTCTTCATC- 364
                      ** ** * *  * *** *   * * * ** ***   ****   ** * **  *     * 

consensus_9338#0      CTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGT 658
consensus_9338#1      -----TGAAATATGTTTTTTGCCACCATGGTTTGCAATTGCTGATGCAGAATATCGTATA 419
                           ** *  *** **  * *  *    *  *** *           *  * *      

consensus_9338#0      ACAGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGC 718
consensus_9338#1      ACCATAGTCTC-CACACGAGTAAGTTTTAGTGGCACCAGGTTTTGCTTTGATCGTGGCAC 478
                      **    * * * *  ***** *     *   *** *             **  * *   *

consensus_9338#0      GCGACCATGGCGAGCT-GATCAAGCTGCGGGTGGTGCCGTACAGCCAGCTGTGGCGCGCC 777
consensus_9338#1      AAAATGGTTATGGTTTCAAATGAATTTTTTGGACTGT-GTCTATGTATATGTTTCGTGAA 537
                         *   *   *   *  *   *  *    *   **  **  *   *  ***  ** *  

consensus_9338#0      ACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCCAAGAGGGAAGGC 837
consensus_9338#1      TTCATTGA---------------------------------------------------- 545
                        *   **                                                    

consensus_9338#0      CTCCTGACACNCTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTG 897
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      TAAGAGCCAGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAG 957
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      AGCGAGCCAATTACTGTGGAGTGTGTGCCTTAATACAACAGCAAGATCGACCTGTGTAAA 1017
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      TGACTAATTGCATGCATTTTGATGTAGAATATGAGAAATTAATAAAGCGTATGTAAACAC 1077
consensus_9338#1      ------------------------------------------------------------
                                                                                  

consensus_9338#0      CGTCAGTCACGCGGCAAAAAAAAAAAAAAAAAA 1110
consensus_9338#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)