cluster # 9339

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9339 cluster # 9339 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9339#0 length = 927 sequences # 5

consensus_9339#1 length = 574 sequences # 1

consensusID : consensus_9339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 927
fasta sequence

                              [TCCATCCCCAAACTCCGCCGCCGCCGCCGTCACCGCCGCTCGCCACCGCCGCGGCCGCCATGAGGGCGCTCGACGAG-AAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGGGGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCGACCCGCAGGCCGGGCGCTACTGCCTCCGCCTCCACAAGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTCCGCCGCGCCACCGCCGTCG-CCCGCCCGCGCCTCGCCGGGGTCGGCACGCCCATCGGCAAGTTCACCCACGGCGGCGCGTTCCACCTCACCGTCCACGCCCTCGACCTCCTCGCCGCCCACGCCCGCCGCCGCGTCTGGCTCAAGCCCGACACCGAGCGCTCCTTCCTCTTCGGCAACTCCGTGCCCAAGTCCTCCCTCGCCCGCATCGCAGAGAACACCAAGGCCAACGACGGCGTCGTCGTCATGTCCATGGCCGACGTCCCGCTCGGCTTCGGCATCGCCGCCAGGTCGGCGCAGGACTGCAGGAAGGCCGACACCAACGCCGTCGTTGTGCTGCACCAGTCTGACGCAGGCGAGTACCTCCGCCGGGAGGAGGAGCTCATGTGAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTGATCGTGATCAATGATATACTTGTCTTATGGACCCTCAAAA]

[+] EMBL AK102921             [TCCATCCCCAAACTCCGCCGCCGCCGCCGTCACCGCCGCTCGCCACCGCCGCGGCCGCCATGAGGGCGCTCGACGAG AAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGGGGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCGACCCGCAGGCCGGGCGCTACTGCCTCCGCCTCCACAAGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTCCGCCGCGCCACCGCCGTCG CCCGCCCGCGCCTCGCCGGGGTCGGCACGCCCATCGGCAAGTTCACCCACGGCGGCGCGTTCCACCTCACCGTCCACGCCCTCGACCTCCTCGCCGCCCACGCCCGCCGCCGCGTCTGGCTCAAGCCCGACACCGAGCGCTCCTTCCTCTTCGGCAACTCCGTGCCCAAGTCCTCCCTCGCCCGCATCGCAGAGAACACCAAGGCCAACGACGGCGTCGTCGTCATGTCCATGGCCGACGTCCCGCTCGGCTTCGGCATCGCCGCCAGGTCGGCGCAGGACTGCAGGAAGGCCGACACCAACGCCGTCGTTGTGCTGCACCAGTCTGACGCAGGCGAGTACCTCCGCCGGGAGGAGGAGCTCATGTGAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCCGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTGATCGTGATCAATGATATACTTGTCT               ]
[+] EMBL AK060349             [  CATCCCCAAACTCCGCCGCCGCCGCCGTCACCGCCGCTCGCCACCGCCGCGGCCGCCATGAGGGCGCTCGACGAG AAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGGGGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCGACCCGCAGGCCGGGCGCTACTGCCTCCGCCTCCACAAGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTCCGCCGCGCCACCGCCGTCG CCCGCCCGCGCCTCGCCGGGGTCGGCACGCCCATCGGCAAGTTCACCCACGGCGGCGCGTTCCACCTCACCGTCCACGCCCTCGACCTCCTCGCCGCCCACGCCCGCTGCCGCGTCTGGCTCAAGCCCGACACCGAGCGCTCCTTCCTCTTCGGCAACTCCGTGCCCAAGTCCTCCCTCGCCCGCATCACAGAGAACACCAAGGCCAACGACGGCGTCGTCGTCATGTCCATGGCCGACGTCCCGCTCGGCTTCGGCATCGCCGCCAGGTCGGCGCAGGACTGCAGGAAGGCCGACACCAACGCCGTCGTTGTGCTGCACCAGTCTGACGCAGGCGAGTACCTCCGCCGGGAGGAGGAGCTCATGTGAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTGATCGTGATCAATGATATACTTGTCT               ]
[+] EMBL CB637662             [                GCCGCCGCCGCCGTCACCGCCGCTTGCCACCGCCGCGGCCGCCATGAGGGCGCTCGACGAG AAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGGGGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCCACCCGCAGGCCGGGCGCTACTGCCTCCGGCTCCACATGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTACGGCGCGCCACCGCCGTCGTCCATGCCGCGCCTCTGCGGGGTCGGCACGCCCATTGGCTAGTTCACACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU085968             [                                                                   GCTCGACGAGTAAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGGGGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCGACCCGCAGGCCGGGCGCTACTGCCTCCGCCTCCACAAGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTCCGCCGCGCCACCGCCGTCG CCCGCCCGCGCCTCGCCGGGGTCGGCACGCCCATCGGCAAGTTCACCCACGGCGGCGCGTTCCACCTCACCGTCCACGCCCTCGACCTCCTCGCCGCCCACGCCCGCCGCCGCGTCTGGCTCAAGCCCGACACCGAGCGCTCCTTCCTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU029469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTCATGTGAGGTGTTGAGGTTT ACANATTGGCGT ACTGCAGGACTG ANGATGCGC TCCTCTTCATGCGATAA TCGAAG TTTTCTACCACCAGTAAATGTGCGA TTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTGATCGTGATCAATGATATACTTGTCTTATGGACCCTCAAAA]




>consensus_9339#0
TCCATCCCCAAACTCCGCCGCCGCCGCCGTCACCGCCGCTCGCCACCGCCGCGGCCGCCA
TGAGGGCGCTCGACGAGAAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGG
GGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCGACCCGCAGGCCG
GGCGCTACTGCCTCCGCCTCCACAAGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTCC
GCCGCGCCACCGCCGTCGCCCGCCCGCGCCTCGCCGGGGTCGGCACGCCCATCGGCAAGT
TCACCCACGGCGGCGCGTTCCACCTCACCGTCCACGCCCTCGACCTCCTCGCCGCCCACG
CCCGCCGCCGCGTCTGGCTCAAGCCCGACACCGAGCGCTCCTTCCTCTTCGGCAACTCCG
TGCCCAAGTCCTCCCTCGCCCGCATCGCAGAGAACACCAAGGCCAACGACGGCGTCGTCG
TCATGTCCATGGCCGACGTCCCGCTCGGCTTCGGCATCGCCGCCAGGTCGGCGCAGGACT
GCAGGAAGGCCGACACCAACGCCGTCGTTGTGCTGCACCAGTCTGACGCAGGCGAGTACC
TCCGCCGGGAGGAGGAGCTCATGTGAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAG
GACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAAT
GTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAA
AAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATC
GGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTGATCGTGATCAATG
ATATACTTGTCTTATGGACCCTCAAAA

consensusID : consensus_9339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [TGTGCAGACTATTTGGTTGGCCTGAATTGCTGTAACTACATAAAACAGTTGTCACCCACCATGATACTCTGCTTCTTTTGTTCCCAATAGCCACCAAAAAAAAAAAGAAAGATATGGTGGTACAACCAAACGACCCTATGACCTGACTGTGCAGTAAACTATTCTTTGACGCCACATAACTTCTTTGCTTGATTACATGGTCTGTAGAACAGTTTTTCGTACAAGAATGAAGACACTTGTAGCCATGTACATTCGGCTTAAAAGCGATTCCGATTGTGAATGCAATTCTGATTTTCCAGCTATCCTTCTTGCAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTG]

[-] EMBL CB637663             [TGTGCAGACTATTTGGTTGGCCTGAATTGCTGTAACTACATAAAACAGTTGTCACCCACCATGATACTCTGCTTCTTTTGTTCCCAATAGCCACCAAAAAAAAAAAGAAAGATATGGTGGTACAACCAAACGACCCTATGACCTGACTGTGCAGTAAACTATTCTTTGACGCCACATAACTTCTTTGCTTGATTACATGGTCTGTAGAACAGTTTTTCGTACAAGAATGAAGACACTTGTAGCCATGTACATTCGGCTTAAAAGCGATTCCGATTGTGAATGCAATTCTGATTTTCCAGCTATCCTTCTTGCAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATTTG]




>consensus_9339#1
TGTGCAGACTATTTGGTTGGCCTGAATTGCTGTAACTACATAAAACAGTTGTCACCCACC
ATGATACTCTGCTTCTTTTGTTCCCAATAGCCACCAAAAAAAAAAAGAAAGATATGGTGG
TACAACCAAACGACCCTATGACCTGACTGTGCAGTAAACTATTCTTTGACGCCACATAAC
TTCTTTGCTTGATTACATGGTCTGTAGAACAGTTTTTCGTACAAGAATGAAGACACTTGT
AGCCATGTACATTCGGCTTAAAAGCGATTCCGATTGTGAATGCAATTCTGATTTTCCAGC
TATCCTTCTTGCAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGC
GCTTCCTCTTCATGCGATAATTCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTAC
CTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTAGTAGAAAAATTTTGTTCCC
AGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCTGTAACTTATCGGTAAGCTACTGC
ATGACTGAATGCTGCAGGCCTGCAGTAACATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9339#0      TCCATCCCCAAACTCCGCCGCCGCCGCCGTCACCGCCGCTCGCCACCGCCGCGGCCGCCA 60
consensus_9339#1      ------------------------------------------------------------
                                                                                  

consensus_9339#0      TGAGGGCGCTCGACGAGAAGGAGACGAAGATGGTGTTCGAGAAGCTGTTCAAGTTCACGG 120
consensus_9339#1      ------------------------------------------------------------
                                                                                  

consensus_9339#0      GGCCGAACCTGAAGCACCTCCTGGAGCGGCCGGCGGTGGAGGGGCCCGACCCGCAGGCCG 180
consensus_9339#1      ------------------------------------------------------------
                                                                                  

consensus_9339#0      GGCGCTACTGCCTCCGCCTCCACAAGAACCGCGTCTACTACGCCTCCGAGGCGCTCGTCC 240
consensus_9339#1      ------------------------------------------------------------
                                                                                  

consensus_9339#0      GCCGCGCCACCGCCGTCGCCCGCCCGCGCCTCGCCGGGGTCGGCACGCCCATCGGCAAGT 300
consensus_9339#1      ------------------------------------------------------------
                                                                                  

consensus_9339#0      TCACCCACGGCGGCGCGTTCCACCTCACCGTCCACGCCCTCGACCTCC-TCGCCGCCCAC 359
consensus_9339#1      -----------------------TGTGCAGACTATTTGGTTGGCCTGAATTGCTGTAACT 37
                                                 * * * *     * * ***   * ** *     

consensus_9339#0      GCCCGCCGCCGCGTCTGGCTCAAGCCCGACACCGAGCGCTCCTTCCTCTT--CGGCAACT 417
consensus_9339#1      ACATAAAACAGT-TGTCACCCAC-CATGATACTCTGCTTCTTTTGTTCCCAATAGCCACC 95
                       *      * *  * *  * **  *  ** **   **     **  **      ** ** 

consensus_9339#0      CCGTGCCCAAGTCCTCCCTCGCCCGCATCGC-AGAGAACACCAAGGCCAACGACGGCGTC 476
consensus_9339#1      AAAAAAAAAAAGAAAGATATGGTGGTACAACCAAACGACCCTATGACC--TGACTGTGCA 153
                              **          *   * *   * * *  ** * * * **   *** * *  

consensus_9339#0      GTCGTCATGTCCATGGC-CGACGTC-CCGCTCGGCTTCG--GCATCGCCGCCAGGTCGGC 532
consensus_9339#1      GTAAACTATTCTTTGACGCCACATAACTTCTTTGCTTGATTACATGGTCTGTAGAACAGT 213
                      **   *   **  ** * * ** *  *  **  ****     *** * *   **  * * 

consensus_9339#0      GCAGGACTGCAGGAAGGCCGACACCAAC-GCCGTCGTTGTGCTGCACCAGTCTGACGCAG 591
consensus_9339#1      TTTTCG-TACAAGAATGAAGACACTTGTAGCCATGTACATTCGGCTTAAAAGCGATTCCG 272
                             * ** *** *  *****     *** *     * * **   *    **  * *

consensus_9339#0      ---GCGAGTAC--CTCCGCCGGGAGGAGGAGCTCATGTG-AGGTGTTGAGGTTTGACACA 645
consensus_9339#1      ATTGTGAATGCAATTCTGATTTTCCAGCTATCCTTCTTGCAGGTGTTGAGGTTTGACACA 332
                         * ** * *   ** *           * *     ** ********************

consensus_9339#0      TTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTT 705
consensus_9339#1      TTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAATTCGAAGTTTTT 392
                      ************************************************************

consensus_9339#0      CTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATC 765
consensus_9339#1      CTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATC 452
                      ************************************************************

consensus_9339#0      ATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTT 825
consensus_9339#1      ATCTATCTAGTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTT 512
                      ************************************************************

consensus_9339#0      AAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATT 885
consensus_9339#1      AAGCTGTAACTTATCGGTAAGCTACTGCATGACTGAATGCTGCAGGCCTGCAGTAACATT 572
                      ************************************************************

consensus_9339#0      TGATCGTGATCAATGATATACTTGTCTTATGGACCCTCAAAA 927
consensus_9339#1      TG---------------------------------------- 574
                      **