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Oryza sativa
cluster # 9340 cluster # 9340       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9340#0 length = 1239 sequences # 4  
consensus_9340#1 length = 794 sequences # 1  
consensus_9340#2 length = 236 sequences # 1  

consensusID : consensus_9340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1239
fasta sequence
                              [CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG-AAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG-AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA-CTTCTAGTTTCAAATGATTCTT-GGAATGCCTGTGCACCATTTT-GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG]

[+] EMBL AK067584             [CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG AAGATGAAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA CTTCTAGTTTCAAATGATTCTT GGAATGCCTGTGCACCATTTT GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG]
[+] EMBL AU029510             [                   TCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGA GTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGC GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK060165             [                                                                                                                          CAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG AAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA CTTCTAGTTTCAAATGATTCTT GGAATGCCTGTGCACCATTTT GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATG                                                ]
[+] EMBL CA767314             [                                                                                                                                                                                                                                         CAAGTTGCTTCTCGACATCGGGTGTGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCNTCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAGCCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGNAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGANAA GCGANGACGGGAAGGGNCCCGCGGACACCAAATACACAGGGCGGGAGCGGAAAAGCTACCTTCTAGNTTCAAAAGATTCTTNGGAANGCCTGNGCACATTTTTGGCCGGTTGGCATACTAGNAGCTCATTATT                                                                                                                                                                                                             ]


>consensus_9340#0 CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGG AGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTC TACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCG AGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTG CTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCAT CACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCG GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATT GATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCAC AACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGA GCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACT GCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAA GCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCG AAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGT GGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGG CAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTG AGAAGGCGAGGACGGGAGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGC TACTTCTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACT AGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCT CTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGA CAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCT TAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG



consensusID : consensus_9340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence
                              [TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCGGAGCCGAAAGCTAC]

[+] EMBL BE040378             [TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCGGAGCCGAAAGCTAC]


>consensus_9340#1 TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTT CGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGA CAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTC TGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGC GGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTG ACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGAT GCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTG AAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGC CTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAA ATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGA GCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATA GGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACA AAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCG GAGCCGAAAGCTAC



consensusID : consensus_9340#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA]

[-] EMBL CA763620             [AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA]


>consensus_9340#2 AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGT CATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATG CGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAG TTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9340#0      CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGG 60
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTC 120
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      TACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCG 180
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTG 240
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      CTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCAT 300
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      CACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCG 360
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATT 420
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCAC 480
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGA 540
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACT 600
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAA 660
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCG 720
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      AAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGT 780
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      ------------------------------------------------------------
                                                                                  

consensus_9340#0      GGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGG 840
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      -----TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTT 55
                                                                                  

consensus_9340#0      CAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTG 900
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACA 115
                                                                                  

consensus_9340#0      AGAAGGCGAGGACGGGAGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGC 960
consensus_9340#2      ------------------------------------------------------AAAAGC 6
consensus_9340#1      GTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGT 175
                                                                              * * 

consensus_9340#0      TACTTCT-AGTTTCAAATGATTCTTGGAATGCCTGT-GCACCATTTTGCCGTTTGTCATA 1018
consensus_9340#2      TACTTTT-AGTTTCAAATGATTCTTGGAATGCCTGT-GCACCATTTTGCCGTTTGTCATA 64
consensus_9340#1      TGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGG 235
                      * **    **  * **  *     **   * * * * ***    *  ***     * *  

consensus_9340#0      CTAGTAGCTCA---TTATTAGTAGTACGAGAAAGGTT----CAGTTGAAGAGTTGGGTGA 1071
consensus_9340#2      CTAGTAGCTCA---TTATTAGTAGTACGAGAAAGGTT----CAGTTGAAGAGTTGGGTGA 117
consensus_9340#1      CTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAA 295
                      ** *  **      *****  * *  * *  *   **    ***** *   ***  *  *

consensus_9340#0      ATGCGCTCTCTCTCTCTACA-CCATAGA--GCCGTTCATG-----TTCTGTAACCTTCTA 1123
consensus_9340#2      ATGCGCTCTCTCTCTTTACA-CCAAAGA--GCCGCTCATG-----TTCTGTAACCTTCTA 169
consensus_9340#1      TGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATA 355
                          *     ***    *** **  ***  ** * * * *      * ** * * ** **

consensus_9340#0      GCAATTCTGAGTTTTGA---CAAATGCTGT---GCAAATCTATGTCCTACTTTTGAAGGA 1177
consensus_9340#2      GCAATTTTGAGTTTTGA---CAAATGCTGT---GCAAATCTATGTCCTACTTTTGAAGAA 223
consensus_9340#1      TAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCA 415
                         **    **    *    ***  ** **   **** * ****       * ***** *

consensus_9340#0      TCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCA 1237
consensus_9340#2      AAAAAAAAAAAAA----------------------------------------------- 236
consensus_9340#1      GAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGA 475
                            *                                                     

consensus_9340#0      CG---------------------------------------------------------- 1239
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      CTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTC 535
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGA 595
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAG 655
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      AAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTT 715
                                                                                  

consensus_9340#0      ------------------------------------------------------------
consensus_9340#2      ------------------------------------------------------------
consensus_9340#1      TGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACA 775
                                                                                  

consensus_9340#0      -------------------
consensus_9340#2      -------------------
consensus_9340#1      GGCCGGAGCCGAAAGCTAC 794
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)