cluster # 9341

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Oryza sativa
cluster # 9341 cluster # 9341 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9341#0 length = 919 sequences # 5

consensus_9341#1 length = 552 sequences # 1

consensusID : consensus_9341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 919
fasta sequence

                              [AAAAAAAATCAATAAACCCCAGAAGAAGCCTCTCCTCCTCTCGACTCCTCTCCTCGCCGCTCTCGTTGCTTCCTCGCGGGGAGTTGGAACCCCCTCCCCTCTCCCTCTCCCTCTCGCTGACTCGCTCTTCGAGGAGAAGGCGAAGGCTCCCGCGCCGCGGAGTCGGAGATGGCCGCCGCCGCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCCTCCAAATTCTTCACCACCTGGTTT-AAAGAGAAGCG-TTGGGATGCC-AGGCAACTTATAGCTTCTGGGGGGATGCCATCA-T-CCCA-C-TC-AGCCACAGTGACAGCGCTTGCAGT-GGCCATAGGAATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGT-AATTATTGCATGTGTGGTGATGCATGATGCTTTTGGAGTTCGCTT-ACATGCTGGGAAGCAGGCAGAGGTATTGAATCAAATTGTGTACGAGCTACCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATTCTTGGACACACAGTTCCTCAGGTTGTGGCCGGTTGCATCATTGGAATCCTTATAGCTGTTGTTATGCGCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGCTTGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAAACTCAAATCTCCTCTTGGATGTGATTTGTACAAATGCTCAGTTTTATGACTATACTATAAGGTTCCTAACCGGTGTAGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCGTAGAAATTTACTGTGAATTGGAAGCTCATGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGTCAACTTTTCTTTCAAAAAAAAAA]

[+] EMBL AK109531             [AAAAAAAATCAATAAACCCCAGAAGAAGCCTCTCCTCCTCTCGACTCCTCTCCTCGCCGCTCTCGTTGCTTCCTCGCGGGGAGTTGGAACCCCCTCCCCTCTCCCTCTCCCTCTCGCTGACTCGCTCTTCGAGGAGAAGGCGAAGGCTCCCGCGCCGCGGAGTCGGAGATGGCCGCCGCCGCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCCTCCAAATTCTTCACCACCTGGTTT AAAGAGAAGCG TTGGGATGCC AGGCAACTTATAGCTTCTGGGGGGATGCCATCA T CCCA C TC AGCCACAGTGACAGCGCTTGCAGT GGCCATAGGAATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGT AATTATTGCATGTGTGGTGATGCGTGATGCTTTTGGAGTTCGCTT ACATGCTGGGAAGCAGGCAGAGGTATTGAATCAAATTGTGTACGAGCTACCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATTCTTGGACACACAGTTCCTCAGGTTGTGGCCGGTTGCATCATTGGAATCCTTATAGCTGTTGTTATGCGCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGCTTGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAAACTCAAATCTCCTCTTGGATGTGATTTGTACAAATGCTCAGTTTTATGACTATACTATAAGGTTCCTAACCGGTGTAGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCGTAGAAATTTACTGTGAATTGGAAGCTCATGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGTCAACTTT                ]
[+] EMBL C74224               [                                                  TCCTCGCCGCTCTCGTTGCTTCCTCGCGGGGAGTTGGAACCCCCTCCCCTCNCCCTCTCCCTCTCGCTGACTCGCTCTTCGAGGAGAAGGCGAAGGCTCCCGCGCCGCGAAGTCGGAGATGGCCGCCGCCGCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCCTCCAAATTCTTCACCACCTGGTTT AAAGAGAAGCG TTGGGATGCC AGGCAACTTATAGCTTCTGGGGGGATGCCATCATT ACCA C TCAAGCCACAGTGACAGCGCTTGCAGTGGGCCATAGGAATCCAAGAAGGCTATCGTAGCGCCANCTTTGCAACTTCAGTAAATTATTGCATGTGTGGTGATGCATGATGCTTTTGGAGTTCGCTTAAAATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU162274             [                                                                  TGCTTCCTCGCGGGGAGTTGGAACCCCCTCCCCTCTCCCTCTCCCTCTCGCTGACTCGCTCTTCGAGGAGAAGGCGAA GCTCCCGCGCCGC GAGTCGGAGATGGCCGCCGCCGCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCCTCCAAATTCTTCACCACCTGGTTT AAAGAGAAGCG TTGGGATGCC AGGCAACTTATAGCTTCTGGGGGGATGCCATCA T CCCA CTTC AGCCACAGTGACAGCGCTTGCAGT GGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA755204             [                                                                                        ACCCCCTCCCCTCTCCCTCTCCCTCTCGCTGACTCGCTCTTCGAGGAGAAGGCGAAGGCTCCCGCGCCGCGGAGTCGGAGATGGCCGCCGCCGCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCCTCCAAATTCTTCACCACCTGGTTT AAAGAGAAGCG TTGGGATGCC AGGCAACTTATAGCTTCTGGGGGGATGCCATCA T CCCA C TC AGCCACAGTGACAGCGCTTGCAGT GGCCATAGGAATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGT AATTATTGCATGTGTGGTGATGCATGATGCTTTTGGAGTTCGCTT ACATGCTGGGAAGCAGGCAGAGGTATTGAATCAAATTGTGTACGAGCTACCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATTCTTGGACACACAGTTCCTCAGGTTGTGGCCGGTTGCATCATTGGAATCCTTATAGCTGTTGTTATGCGCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGCTTGATCACCTCATATCGCATCGCTGATGAGTTGTG                                                                                                                                                                                                                                     ]
[+] EMBL AU082996             [                                                                                                                                                                                                                                                                    GTTTAAAAGANAAGCGTTTGGGATGCCNAGGCAACTTATAGCTTCTGGGGGAATGCNATCA TCCCCANT TC AGCCACAGTGACAGCGCTTGCAGT GGCCATAGGAATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGT AATTATTGCATGTGTGGTGATGCATGATGCTTTTGGAGTTCGCTT ACATGCTGGGAAGCAGGCAGAGGTATTGAATCAAATTGTGTACGAGCTACCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATTCTTGGACACACAGTTCCTCAGGTTGTGGCCGGTTGCATCATTGGAATCCTTATAGCTGTTGTTATGCGCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGCTTGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAAACTCAAATCTCCTCTTGGATGTGATTTGTACAAATGCTCAGTTTTATGACTATACTATAAGGTTCCTAACCGGTGTAGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCGTAGAAATTTACTGTGAATTGGAAGCTCATGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGTCAACTTTTCTTTCAAAAAAAAAA]




>consensus_9341#0
AAAAAAAATCAATAAACCCCAGAAGAAGCCTCTCCTCCTCTCGACTCCTCTCCTCGCCGC
TCTCGTTGCTTCCTCGCGGGGAGTTGGAACCCCCTCCCCTCTCCCTCTCCCTCTCGCTGA
CTCGCTCTTCGAGGAGAAGGCGAAGGCTCCCGCGCCGCGGAGTCGGAGATGGCCGCCGCC
GCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCC
TCCAAATTCTTCACCACCTGGTTTAAAGAGAAGCGTTGGGATGCCAGGCAACTTATAGCT
TCTGGGGGGATGCCATCATCCCACTCAGCCACAGTGACAGCGCTTGCAGTGGCCATAGGA
ATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGTAATTATTGCATGTGTGGTG
ATGCATGATGCTTTTGGAGTTCGCTTACATGCTGGGAAGCAGGCAGAGGTATTGAATCAA
ATTGTGTACGAGCTACCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATT
CTTGGACACACAGTTCCTCAGGTTGTGGCCGGTTGCATCATTGGAATCCTTATAGCTGTT
GTTATGCGCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGCTTGAT
CACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAAACTCAAATCTCCTCTTGGAT
GTGATTTGTACAAATGCTCAGTTTTATGACTATACTATAAGGTTCCTAACCGGTGTAGGT
CTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCGTAGAAATTTACTGT
GAATTGGAAGCTCATGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGTCAAC
TTTTCTTTCAAAAAAAAAA

consensusID : consensus_9341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [TTTTTGGCCCGTTTGCACCATGGGANCCCTAATAGCTGTTGGTTAATGCCGCTTAGCTCTATGGAGTNCTTAGACACGCATTANCGTAGGTATTTGCTGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAACTCAATCCCCTCTGGATGTGATTTGTACAATGCTCCAGTTTTAGGACTATACTATAAGGTTCCTAACCGGTGTAGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCNTAGAAATTTACTGTGAATTGGAAGCTCAGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGTCAACTTTTCTTTCTGGCACGCAGTGATATTTTAAGTTCTGCATCACTGTCCTTAGTTTATTATTTTACTGTGCTGTGCTTGTTAGACCTAGAATGTTACTACCATACAAATGTCCCAAAATTTGGTCCTGGGCAGTACTCAGTAGTGTGTGTGCCTATGCTGTTTTACTGTCATTCATAGTTCAGACTAATCTGTTTTCCTCTGAAAAAAAAAAAAAAA]

[+] EMBL AU029599             [TTTTTGGCCCGTTTGCACCATGGGANCCCTAATAGCTGTTGGTTAATGCCGCTTAGCTCTATGGAGTNCTTAGACACGCATTANCGTAGGTATTTGCTGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAACTCAATCCCCTCTGGATGTGATTTGTACAATGCTCCAGTTTTAGGACTATACTATAAGGTTCCTAACCGGTGTAGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCNTAGAAATTTACTGTGAATTGGAAGCTCAGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGTCAACTTTTCTTTCTGGCACGCAGTGATATTTTAAGTTCTGCATCACTGTCCTTAGTTTATTATTTTACTGTGCTGTGCTTGTTAGACCTAGAATGTTACTACCATACAAATGTCCCAAAATTTGGTCCTGGGCAGTACTCAGTAGTGTGTGTGCCTATGCTGTTTTACTGTCATTCATAGTTCAGACTAATCTGTTTTCCTCTGAAAAAAAAAAAAAAA]




>consensus_9341#1
TTTTTGGCCCGTTTGCACCATGGGANCCCTAATAGCTGTTGGTTAATGCCGCTTAGCTCT
ATGGAGTNCTTAGACACGCATTANCGTAGGTATTTGCTGATCACCTCATATCGCATCGCT
GATGAGTTGTGAAGCATGAAACTCAATCCCCTCTGGATGTGATTTGTACAATGCTCCAGT
TTTAGGACTATACTATAAGGTTCCTAACCGGTGTAGGTCTGCGTTGTAGGAGGTAGATTG
TAGTTCAGTTGGTGCTGTACATCNTAGAAATTTACTGTGAATTGGAAGCTCAGTGATCAA
CCTTTGTTATACAACTGGCAATGATCATGCTGTCAACTTTTCTTTCTGGCACGCAGTGAT
ATTTTAAGTTCTGCATCACTGTCCTTAGTTTATTATTTTACTGTGCTGTGCTTGTTAGAC
CTAGAATGTTACTACCATACAAATGTCCCAAAATTTGGTCCTGGGCAGTACTCAGTAGTG
TGTGTGCCTATGCTGTTTTACTGTCATTCATAGTTCAGACTAATCTGTTTTCCTCTGAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9341#0      AAAAAAAATCAATAAACCCCAGAAGAAGCCTCTCCTCCTCTCGACTCCTCTCCTCGCCGC 60
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      TCTCGTTGCTTCCTCGCGGGGAGTTGGAACCCCCTCCCCTCTCCCTCTCCCTCTCGCTGA 120
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      CTCGCTCTTCGAGGAGAAGGCGAAGGCTCCCGCGCCGCGGAGTCGGAGATGGCCGCCGCC 180
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      GCCGCCGTGGTGAACTACCCGCTCGTCGCGGCGCTCGTGGCGTTCGCGCTCGCGCAGTCC 240
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      TCCAAATTCTTCACCACCTGGTTTAAAGAGAAGCGTTGGGATGCCAGGCAACTTATAGCT 300
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      TCTGGGGGGATGCCATCATCCCACTCAGCCACAGTGACAGCGCTTGCAGTGGCCATAGGA 360
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      ATCCAAGAAGGCTATCGTAGCGCCACCTTTGCAACTTCAGTAATTATTGCATGTGTGGTG 420
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      ATGCATGATGCTTTTGGAGTTCGCTTACATGCTGGGAAGCAGGCAGAGGTATTGAATCAA 480
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      ATTGTGTACGAGCTACCAGAAGAGCATCCATTATCAGAGACAAAGCCATTGCGTGAAATT 540
consensus_9341#1      ------------------------------------------------------------
                                                                                  

consensus_9341#0      CTTGGACACACAGTTCCTCAGGTTGTGGCCGGTT-GCATCATTGGAATCCTTATAGCTGT 599
consensus_9341#1      ---------------------TTTTTGGCCCGTTTGCACCATGGGANCCCTAATAGCTGT 39
                                            ** ***** *** *** *** ***  *** ********

consensus_9341#0      TGTT--ATGC-GCTTAGCTCTATGGAGTTCTTAGACACGCATTACTCGTAGGTATTTGCT 656
consensus_9341#1      TGGTTAATGCCGCTTAGCTCTATGGAGTNCTTAGACACGCATTAN-CGTAGGTATTTGCT 98
                      ** *  **** ***************** ***************  **************

consensus_9341#0      TGATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAAACTCAAATCTCCTCTT 716
consensus_9341#1      -GATCACCTCATATCGCATCGCTGATGAGTTGTGAAGCATGAAA-CTCAA-TCCCCTCT- 154
                       ******************************************* ***** ** ***** 

consensus_9341#0      GGATGTGATTTGTACAAATGCTCAGTTTTATGACTATACTATAAGGTTCCTAACCGGTGT 776
consensus_9341#1      GGATGTGATTTGTACAATGCTCCAGTTTTAGGACTATACTATAAGGTTCCTAACCGGTGT 214
                      *****************     ******** *****************************

consensus_9341#0      AGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCGTAGAAATTTA 836
consensus_9341#1      AGGTCTGCGTTGTAGGAGGTAGATTGTAGTTCAGTTGGTGCTGTACATCNTAGAAATTTA 274
                      ************************************************* **********

consensus_9341#0      CTGTGAATTGGAAGCTCATGTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGT 896
consensus_9341#1      CTGTGAATTGGAAGCTCA-GTGATCAACCTTTGTTATACAACTGGCAATGATCATGCTGT 333
                      ****************** *****************************************

consensus_9341#0      CAACTTTTCTTTCAAAAAAAAAA------------------------------------- 919
consensus_9341#1      CAACTTTTCTTTCTGGCACGCAGTGATATTTTAAGTTCTGCATCACTGTCCTTAGTTTAT 393
                      *************    *   *                                      

consensus_9341#0      ------------------------------------------------------------
consensus_9341#1      TATTTTACTGTGCTGTGCTTGTTAGACCTAGAATGTTACTACCATACAAATGTCCCAAAA 453
                                                                                  

consensus_9341#0      ------------------------------------------------------------
consensus_9341#1      TTTGGTCCTGGGCAGTACTCAGTAGTGTGTGTGCCTATGCTGTTTTACTGTCATTCATAG 513
                                                                                  

consensus_9341#0      ---------------------------------------
consensus_9341#1      TTCAGACTAATCTGTTTTCCTCTGAAAAAAAAAAAAAAA 552