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Oryza sativa
cluster # 9346 cluster # 9346       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9346#0 length = 842 sequences # 5  
consensus_9346#1 length = 457 sequences # 1  

consensusID : consensus_9346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 842
fasta sequence
                              [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA-GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCACT]

[+] EMBL AK102727             [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCACT]
[+] EMBL CF313375             [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGAGGGGGGGAGATGGACCANGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK058872             [ TTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGTTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGAT                                                                                                                     ]
[+] EMBL AU029868             [                              ATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATNCGTCTGTCCTGCGATTCTTTACCTGTGTGACTGGC NCCTGGAGAAGGG AAGCTCTCTGATA                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB097062             [                                              TGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCAAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCCGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGATTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTG                                                                                                                                       ]


>consensus_9346#0 CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGG GGATTTGGATTTGGATTGGAGAGAGGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGA GCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCT CAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGA TGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAA GGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTG TGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCA CT



consensusID : consensus_9346#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence
                              [TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101463             [TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9346#1 TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACA AGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGC TCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCA AGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACG CATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATG AAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTC GTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGT GTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9346#0      CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGG 60
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      GGATTTGGATTTGGATTGGAGAGAGGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGA 120
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      GCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCT 180
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      CAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGA 240
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      TGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAA 300
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      GGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT 360
consensus_9346#1      ---------------------TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT 39
                                           ***************************************

consensus_9346#0      CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG 420
consensus_9346#1      CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG 99
                      ************************************************************

consensus_9346#0      GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT 480
consensus_9346#1      GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT 159
                      ************************************************************

consensus_9346#0      GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA 540
consensus_9346#1      GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA 219
                      ************************************************************

consensus_9346#0      AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT 600
consensus_9346#1      AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT 279
                      ************************************************************

consensus_9346#0      TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC 660
consensus_9346#1      TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC 339
                      ************************************************************

consensus_9346#0      AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA 720
consensus_9346#1      AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA 399
                      ************************************************************

consensus_9346#0      TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTG 780
consensus_9346#1      TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA-- 457
                      ******************************* *********          *        

consensus_9346#0      TGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCA 840
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      CT 842
consensus_9346#1      --
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)