These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 842 fasta sequence [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA-GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCACT] [+] EMBL AK102727 [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCACT] [+] EMBL CF313375 [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGAGGGGGGGAGATGGACCANGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTG ] [+] EMBL AK058872 [ TTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGTTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGAT ] [+] EMBL AU029868 [ ATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATNCGTCTGTCCTGCGATTCTTTACCTGTGTGACTGGC NCCTGGAGAAGGG AAGCTCTCTGATA ] [+] EMBL CB097062 [ TGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCAAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCCGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGATTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTG ] consensusID : consensus_9346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101463 [TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9346#0 CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGG 60 consensus_9346#1 ------------------------------------------------------------ consensus_9346#0 GGATTTGGATTTGGATTGGAGAGAGGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGA 120 consensus_9346#1 ------------------------------------------------------------ consensus_9346#0 GCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCT 180 consensus_9346#1 ------------------------------------------------------------ consensus_9346#0 CAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGA 240 consensus_9346#1 ------------------------------------------------------------ consensus_9346#0 TGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAA 300 consensus_9346#1 ------------------------------------------------------------ consensus_9346#0 GGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT 360 consensus_9346#1 ---------------------TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT 39 *************************************** consensus_9346#0 CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG 420 consensus_9346#1 CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG 99 ************************************************************ consensus_9346#0 GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT 480 consensus_9346#1 GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT 159 ************************************************************ consensus_9346#0 GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA 540 consensus_9346#1 GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA 219 ************************************************************ consensus_9346#0 AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT 600 consensus_9346#1 AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT 279 ************************************************************ consensus_9346#0 TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC 660 consensus_9346#1 TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC 339 ************************************************************ consensus_9346#0 AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA 720 consensus_9346#1 AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA 399 ************************************************************ consensus_9346#0 TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTG 780 consensus_9346#1 TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA-- 457 ******************************* ********* * consensus_9346#0 TGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCA 840 consensus_9346#1 ------------------------------------------------------------ consensus_9346#0 CT 842 consensus_9346#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||