cluster # 9347

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Oryza sativa
cluster # 9347 cluster # 9347 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9347#0 length = 662 sequences # 3

consensus_9347#1 length = 277 sequences # 1
consensus_9347#2 length = 244 sequences # 2

consensusID : consensus_9347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 662
fasta sequence

                              [TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCCCTTACGGCGCGAACCAGGGGT-GGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTCGTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCAGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGA-GGTCGGCTGCGCCCAGGCCAC-CTGCACCACCGGCGCCACGCTCACCATC-TGCCTC-TACAACCCGCACGGCAACGTGCA-GGGCCAGAGCCCC-TACTGACCGGTCTCTTCGCCG-CCGCCGTCG-CCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCTGCTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCACCCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAAAAA]

[+] EMBL AU082529             [TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCCCTTACGGCGCGAACCAGGGGT GGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTCGTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCAGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGA GGTCGGCTGCGCCCAGGCCAC CTGCACCACCGGCGCCACGCTCACCATC TGCCTC TACAACCCGCACGGCAACGTGCA GGGCCAGAGCCCC TACTGACCGGTCTCTTCGCCG CCGCCGTCG CCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCTGCTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCACCCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAAAAA]
[+] EMBL AU029886             [                                 CGGGTTCGCGGACATG AGCGGGA CCCCTACGGCGCGAACCAGGGGTGGGCGAGCTACCCGGCGCGCCCCG GGAGGTGGTGGCGTCGTGGGTGGCGCAGGGGAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCAGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGG GAANGGTCGGCTGCG CCAGGCCAC CTGCACCACCGGCGCCACGCTCACCATC TTGCTC TACAACCCGCACGGCAACNT AA GGGCCAGAGCC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU029887             [                                                                                                                                                                                                                                                GCCACNTTGCACCACCGGCGCCACGCTCACCATCTTGCCTCTTACAACCCGCACGGNAACGTGCAGGGGCNAGAGCCCCNTACTGACCGGTCTCTTCGCCGCCCGCCCTCGCCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGATTTGGACTGAAAAaa                                                                                                                                                            ]




>consensus_9347#0
TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCC
CTTACGGCGCGAACCAGGGGTGGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTC
GTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCA
GTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGAGGTCGGCTGCGCCCAGGC
CACCTGCACCACCGGCGCCACGCTCACCATCTGCCTCTACAACCCGCACGGCAACGTGCA
GGGCCAGAGCCCCTACTGACCGGTCTCTTCGCCGCCGCCGTCGCCGTCGCCGTCGACGTC
GCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGT
GTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTG
CGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCTG
CTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCAC
CCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAAA
AA

consensusID : consensus_9347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [CAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCGGCGTGCTTCGTCCTCGCCGCGCTTGCGATGTGGGCGGCGCCGCGGCGTGCGGCGCGCGCGCGGTTTCCTCGTGGGGCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCGTCGTCGTCGGCGGCGGCGGACGAGTTCCTGGCGCCGCACAACCAGGCGCGGGCGGCGGTCGGGGTTGCGCCGCTGCGGTTGAACNGCGAACTTGCGG]

[+] EMBL AU082528             [CAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCGGCGTGCTTCGTCCTCGCCGCGCTTGCGATGTGGGCGGCGCCGCGGCGTGCGGCGCGCGCGCGGTTTCCTCGTGGGGCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCGTCGTCGTCGGCGGCGGCGGACGAGTTCCTGGCGCCGCACAACCAGGCGCGGGCGGCGGTCGGGGTTGCGCCGCTGCGGTTGAACNGCGAACTTGCGG]




>consensus_9347#1
CAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGC
CGCGGCGTGCTTCGTCCTCGCCGCGCTTGCGATGTGGGCGGCGCCGCGGCGTGCGGCGCG
CGCGCGGTTTCCTCGTGGGGCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCG
TCGTCGTCGGCGGCGGCGGACGAGTTCCTGGCGCCGCACAACCAGGCGCGGGCGGCGGTC
GGGGTTGCGCCGCTGCGGTTGAACNGCGAACTTGCGG

consensusID : consensus_9347#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 244
fasta sequence

                              [ACTCAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACG-CTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAAAAAAAANANANAAAAAAAAAAAACAAA]

[+] EMBL AU093400             [ACTCAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACG CTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAAAAAAAANANANAAAAAAAAAAAACAAA]
[+] EMBL OSR06891A            [ CTCAGCTCACCTACTCCAGATCTCGCCATGGTGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTNCTTAAAAAAAAAa                    ]




>consensus_9347#2
ACTCAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGAT
GGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGC
TTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATT
ACGCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAAAAAAAANANANAAAAAAAAAAAA
CAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9347#0      TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCC 60
consensus_9347#2      ------------------------------------------------------------
consensus_9347#1      ------------------------------------------------------------
                                                                                  

consensus_9347#0      CTTACGGCGCGAACCAGGGGTGGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTC 120
consensus_9347#2      ------------------------------------------------------------
consensus_9347#1      ------------------------------------------------------------
                                                                                  

consensus_9347#0      GTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCA 180
consensus_9347#2      ------------------------------------------------------------
consensus_9347#1      ------------------------------------------------------------
                                                                                  

consensus_9347#0      GTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGAGGTCGGCTGCGCCCAGGC 240
consensus_9347#2      ------------------------------------------------------------
consensus_9347#1      ------------------------------------------------------------
                                                                                  

consensus_9347#0      CACCTGCACCACCGGCGCCACGCTCACCATCTGCCTCTACAACCCGCACGGCAACGTGCA 300
consensus_9347#2      ---------------------ACTCAGC-TCACCTACTCCAGATCTCGCCATGGCG-GCG 37
consensus_9347#1      ------------------------CAGC-TCACCTACTCCAGATCTCGCCATGGCG-GCG 34
                                              ** * **  *  ** **   * * *     ** ** 

consensus_9347#0      GGGCCAGAGCCCCTACTGACCGGTCTCTTCGCCGCCGCCGTCGCCGTCGCCGTCGACGTC 360
consensus_9347#2      GCGTCG----TCTCGGTGGCAG-----CGGATGGCCGCCGTCGCCGTCGCCGTCGACGTC 88
consensus_9347#1      GCGTCG----TCTCGGTGGCAG-----CGGATGGCCGCGGCGTGCTTCGTCCTCGCCG-C 84
                      * * *      *    ** * *           ***** *    * *** * *** ** *

consensus_9347#0      GCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGT 420
consensus_9347#2      GCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGT 148
consensus_9347#1      GCTT--GCGATGTGGGCGGC--GCCGCGGCGTGCGGCGCGCGCGC-GGTTTCCTCGTGGG 139
                      **    *** *** * ***   **    * *        **   *   * *    **** 

consensus_9347#0      GTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAG-AGCTGCGT 479
consensus_9347#2      GTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGC-TACGTGGTGTTTAG-AGCTGCGT 206
consensus_9347#1      GCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCGTCGTCGTCGGCGGCGGCGG 199
                      * * *  *  *  **    * *    *  *   **    *** **  *  *  ** *** 

consensus_9347#0      GCGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCT 539
consensus_9347#2      GCGTGCTTAAAAAAAAANANANAAAAAAAAAAAACAAA---------------------- 244
consensus_9347#1      ACGAGTTCCTGGCGCCGCACAACCA-GGCGCGGGCGGCGGTCGGGGTTGCGCCGC-TGCG 257
                       ** * *                 *                                   

consensus_9347#0      GCTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCA 599
consensus_9347#2      ------------------------------------------------------------
consensus_9347#1      GTTGAACNGCGAACTTGCGG---------------------------------------- 277
                                                                                  

consensus_9347#0      CCCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAA 659
consensus_9347#2      ------------------------------------------------------------
consensus_9347#1      ------------------------------------------------------------
                                                                                  

consensus_9347#0      AAA 662
consensus_9347#2      ---
consensus_9347#1      ---