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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence
[AAGAAAAATCTGTCACTGAACAGAAATACGTCCGCAGTACAATCCATCCCCAGATTCTGGGTGAAGGTATTTACAGGAGGAAAATGTAAGGCACAAGAATATGAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGAT]
[+] EMBL CB630801 [AAGAAAAATCTGTCACTGAACAGAAATACGTCCGCAGTACAATCCATCCCCAGATTCTGGGTGAAGGTATTTACAGGAGGAAAATGTAAGGCACAAGAATATGAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGT ]
[+] EMBL CB644764 [ tctttttttTTTTTC ATCCGCCGGATTGACTCACATCTTGCACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGAT]
consensusID : consensus_9356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence
[TCCTTTTTTTTTTTACAATAATACAAGGGATAAAGAATGTTTCTAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCTCTGCATCGGGGTGCTTGGAAAAGAGTCAAACAAAGAGTTCTGCATAGGAGTACTTGGTACAGAATCAAATAC]
[+] EMBL CB660890 [TCCTTTTTTTTTTTACAATAATACAAGGGATAAAGAATGTTTCTAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCT ]
[-] EMBL AU030465 [ TGCTNCGG AAG ATC AATCTNCCAAAGGTGTCA TGCTGCCTTGATCAGCG TGCTCCGGANGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATNGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTTCCCANTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCTCTGCATCGGGGTGCTTGGAAAAGAGTCAAACAAAGAGTTCTGCATAGGAGTACTTGGTACAGAATCAAATAC]
consensusID : consensus_9356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TTTTTTTTTTTTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAAAACATCAAATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGAACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCCGCTTCGCTATATCTTGGTG]
[+] EMBL CA762048 [TTTTTTTTTTTTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAAAACATCAAATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGAACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCCGCTTCGCTATATCTTGGTG]
consensusID : consensus_9356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[TTTTTTTTTTTAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGGCCAGTACCAAAAGGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTT]
[-] EMBL AU095065 [TTTTTTTTTTTAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGGCCAGTACCAAAAGGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9356#0 AAGAAAAATCTGTCACTGAACAGAAATACGTCCGCAGTACAATCCATCCCCAGATTCTGG 60
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 ------------------------------------------------------------
consensus_9356#1 ------------------------------------------------------------
consensus_9356#0 GTGAAGGTATTTACAGGAGGAAAATGTAAGGCACAAGAATATGAAAACGCTAAAAACATG 120
consensus_9356#3 --------------------------------TTTTTTTTTTTAAAACGCTAAAAACATG 28
consensus_9356#2 ------------------------------------------------------------
consensus_9356#1 ------------------------------------------------------------
consensus_9356#0 GACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGT 180
consensus_9356#3 GACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGT 88
consensus_9356#2 --TTTTTTTTTTTTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGT 58
consensus_9356#1 -------------------------------TCCTTTTTTTTTTTACAATAATACAAGGG 29
** * ** ***************
consensus_9356#0 ATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCC 240
consensus_9356#3 ATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCC 148
consensus_9356#2 ATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAAAACATCAAATCC 118
consensus_9356#1 ATAAAGAATGTTTCTAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCC 89
************* ********************************* ******* ****
consensus_9356#0 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 300
consensus_9356#3 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 208
consensus_9356#2 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 178
consensus_9356#1 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 149
************************************************************
consensus_9356#0 CCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCA 360
consensus_9356#3 CCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCA 268
consensus_9356#2 CCCAAGCAAAAACTGTCTTGCCCTTGAACGTGTATATATATTTATCTGCAGTAAGGTGCA 238
consensus_9356#1 CCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCA 209
************************** *********************************
consensus_9356#0 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 420
consensus_9356#3 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 328
consensus_9356#2 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 298
consensus_9356#1 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 269
************************************************************
consensus_9356#0 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAA 480
consensus_9356#3 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGGCCAGTACCAAAA 388
consensus_9356#2 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAA 358
consensus_9356#1 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAA 329
*********************************************** ************
consensus_9356#0 GG-ATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 539
consensus_9356#3 GGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 448
consensus_9356#2 GG-ATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 417
consensus_9356#1 GG-ATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 388
** *********************************************************
consensus_9356#0 AAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCT 599
consensus_9356#3 AAATCTCGCAAAAGCATCTGTT-------------------------------------- 470
consensus_9356#2 AAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCT 477
consensus_9356#1 AAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCT 448
**********************
consensus_9356#0 CGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAA 659
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 CGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAA 537
consensus_9356#1 CGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAA 508
consensus_9356#0 GGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTC 719
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 GGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTC 597
consensus_9356#1 GGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTC 568
consensus_9356#0 ACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTC 779
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 ACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTC 657
consensus_9356#1 ACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTC 628
consensus_9356#0 GAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGG 839
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 GAATGAACTGTCGTCTCCCGCTTCGCTATATCTTGGTG---------------------- 695
consensus_9356#1 GAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGG 688
consensus_9356#0 TGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGC 899
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 ------------------------------------------------------------
consensus_9356#1 TGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGC 748
consensus_9356#0 AGTAGGAGAT-------------------------------------------------- 909
consensus_9356#3 ------------------------------------------------------------
consensus_9356#2 ------------------------------------------------------------
consensus_9356#1 AGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCTCTGCATCGGGGTGCT 808
consensus_9356#0 ---------------------------------------------------------
consensus_9356#3 ---------------------------------------------------------
consensus_9356#2 ---------------------------------------------------------
consensus_9356#1 TGGAAAAGAGTCAAACAAAGAGTTCTGCATAGGAGTACTTGGTACAGAATCAAATAC 865
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||