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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1212 fasta sequence
[AGACATCACGCGAGGAGAGAAAAAACTAGCCGTTGCGCTACTCCTCCGCCATGGACGCGACGGCGCCGCTGCTCAGCCCCGCCTCCGACGACCGCTTCTGGGACCGCCTCCGCACCCGCGTCGACACCATCCTCGAGGACCGCCGCCTCGTCGCTCCCCCCGCCGCCACGTGCGGGGTGGAATCCGAGCGGGGGAAGCGGCTCAGGGAGGACTCGCTGATGCTGGTGCGTGGCCTCGACTCCGTCGCCGCCTCGCTGGCGCA-CTCTCCGACACCCTCACCGCCGCGCAGAAGGGAGTGAATGCGCTCGCCACGTGCTCTTCCCAGGCGAGGGAATGCGAGAGAGGTGATGAGGA-GGAGGAGCCGAAAGCCAAGC-GGCGCTGCAGCTTGGCTGAGACGGTGAGCTTCGACGGCGAGACTCCGGTCGCC-GGAGCAGATTCAGGTGAAGGTTCAGAGAAAGAAGAATTAGCTGCGGATGCGAAACTGCGTCAGGAGAACGGCGGCATTCAGGCCACTTCGGAGGTCGCCAAGAGCACCAATCTGAAGCGTGCCAGAAATCTGGC-GGTCTCGATGGCCGGAAGAGCGGCTGCTCTGGCGAGGGAGCTGAAGAACATCAAATCGGAGCTGCACTTCATGCAGGAGAGATGCGGTTTGCTTGAGGAGGAGAACAAGAGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGA-TTCAGCTGGTGGAGTATCATCAGCTGACC-TCCCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATATTTATGTGATCAATTCCACTTCGTAATGTTGACAATAACAAATGTGTGTTCTGAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU164719 [AGACATCACGCGAGGAGAGAAAAAACTAGCCGTTGCGCTACTCCTCCGCCATGGACGCGACGGCGCCGCTGCTCAGCCCCGCCTCCGACGACCGCTTCTGGGACCGCCTCCGCACCCGCGTCGACACCATCCTCGAGGACCGCCGCCTCGTCGCTCCCCCCGCCGCCACGTGCGGGGTGGAATCCGAGCGGGGGAAGCGGCTCAGGGAGGACTCGCTGATGCTGGTGCGTGGCCTCGACTCCGTCGCCGCCTCGCTGGCGCA CTCTCCGACACCCTCACCGCCGCGCAGAAGGGAGTGAATGCGCTCGCCACGTGCTCTTCCCAGGCGAGGGAATGCGAGAGAGGTGATGAGGANGGAGGAGCCGAAAGCCAAGCGGGCGCTGCAGCTTGGCTGAGANGGTGAGCTTCGANGGNGAGACTCCGGTCGCCGGGAGCAGATTCA GTGAAGGTTC ]
[+] EMBL AK059410 [ GAGAGAAAAAACTAGCCGTTGCGCTACTCCTCCGCCATGGACGCGACGGCGCCGCTGCTCAGCCCCGCCTCCGACGACCGCTTCTGGGACCGCCTCCGCACCCGCGTCGACACCATCCTCGAGGACCGCCGCCTCGTCGCTCCCCCCGCCGCCACGTGCGGGGTGGAATCCGAGCGGGGGAAGCGGCTCAGGGAGGACTCGCTGATGCTGGTGCGTGGCCTCGACTCCGTCGCCGCCCCGCTGGCGCAGCTCTCCGACACCCTCACCGCCGCGCAGAAGGGAGTGAATGCGCTCGCCACGTGCTCTTCCCAGGCGAGGGAATGCGAGAGAGGTGATGAGGA GGAGGAGCCGAAAGCCAAGC GGCGCTGCAGCTTGGCTGAGACGGTGAGCTTCGACGGCGAGACTCCGGTCGCC GGAGCAGATTCAGGTGAAGGTTCAGAGAAAGAAGAATTAGCTGCGGATGCGAAACTGCGTCAGGAGAACGGCGGCATTCAGGCCACTTCGGAGGTCGCCAAGAGCACCAATCTGAAGCGTGCCAGAAATCTGGC GGTCTCGATGGCCGGAAGAGCGGCTGCTCTGGCGAGGGAGCTGAAGAACATCAAATCGGAGCTGCACTTCATGCAGGAGAGATGCGGTTTGCTTGAGGAGGAGAACAAGAGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGA TTCAGCTGGTGGAGTATCATCAGCTGACC TCCCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATAT ]
[+] EMBL BP184514 [ AGGCGAGGGAATGCGAGAGAGGTGATGAGGA GGAGGAGCCGAAAGCCAAGC GGCGCTGCAGCTTGGCTGAGACGGTGAGCTTCGACGGCGAGACTCCGGTCGCC GGAGCAGATTCAGGTGAAGGTTCAGAGAAAGAAGAATTAGCTGCGGATGCGAAACTGCGTCAGGAGAACGGCGGCATTCAGGCCACTTCGGAGGTCGCCAAGAGCACCAATCTGAAGCGTGCCAGAAATCTGGC GGTCTCGATGGCCGGAAGAGCGGCTGCTCTGGCGAGGGAGCTGAAGAACATCAAATCGGAGCTGCACTTCATGCAGGAGAGATGCGGTTTGCTTGAGGAGGAGAACAAGAGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGA TTCAGCTGGTGGAGTATCATCAGCTGACC TCCCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATATTTATGTGATCAATTCCACTTCGTAATGTTGACAATAACAAATGTGTGTTCTGAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030731 [ GAGCA CNATCTGAANCGTGCCAGAAATCTGGCNGGTCNCGATGGCCTNAAGAGCGGCTGCTCTGGCGAGGGAGCTGAAGAACATCAAATCGGAGCTGCACTTCATGCAGGNGAGATGCGGTTTGCTTGAGGNGGNGAACAAGAGGCTCAGAGAGGGGTATGACAATGGNGTTCCCCCTGAAGAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGNGAACGCCAACCTGTCCNGGGAAAACCAGAGCCTGA TTCAGCTGGTGGNGTATCATCAGCTGACC TCCCAGGACCTCGCTGAATCTTACGAGGACGTNATGGCGGGGATGCGGCTGGACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGNGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAGCTGGGTCTTCTCCNGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATATTTATGTGATCAATTCCACTTCGTNATGNTGNCAAAAA ]
[+] EMBL AU031137 [ CGGAAAAATCTCGANTGGCGCAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGATTTCAGCTGGTGGAGTATCATCAGCTGACCTTCCCAGGACNTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATATTTATGTGATCAATTCCA TTCGTAATGTTGACAATAACAAATGTGTGTTCTGAATCTTAAAAA ]
consensusID : consensus_9360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[AGAGGACGAGACAAGGGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCATCAGCTGACCTCCCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTTGTCGCCGCAAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATTTGATAAGTTGGAAGCCTTGGGGTCATTTGATGAGTAGATAAATTTGAGGAGAATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATTTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCCCTCTCGGTGGCCATATTTATGTGATCAATTCCCCTTTGTAATGTTGACAATAACAAATGTGTGTTTTGAATTTTAATTCTAAATAAAATTTTAGTCTTTGGAAAAAAAAAAAAAA]
[-] EMBL CA762783 [AGAGGACGAGACAAGGGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCATCAGCTGACCTCCCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTTGTCGCCGCAAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCCATTTGATAAGTTGGAAGCCTTGGGGTCATTTGATGAGTAGATAAATTTGAGGAGAATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATTTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGCCCCTCTCGGTGGCCATATTTATGTGATCAATTCCCCTTTGTAATGTTGACAATAACAAATGTGTGTTTTGAATTTTAATTCTAAATAAAATTTTAGTCTTTGGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9360#0 AGACATCACGCGAGGAGAGAAAAAACTAGCCGTTGCGCTACTCCTCCGCCATGGACGCGA 60
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 CGGCGCCGCTGCTCAGCCCCGCCTCCGACGACCGCTTCTGGGACCGCCTCCGCACCCGCG 120
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 TCGACACCATCCTCGAGGACCGCCGCCTCGTCGCTCCCCCCGCCGCCACGTGCGGGGTGG 180
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 AATCCGAGCGGGGGAAGCGGCTCAGGGAGGACTCGCTGATGCTGGTGCGTGGCCTCGACT 240
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 CCGTCGCCGCCTCGCTGGCGCACTCTCCGACACCCTCACCGCCGCGCAGAAGGGAGTGAA 300
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 TGCGCTCGCCACGTGCTCTTCCCAGGCGAGGGAATGCGAGAGAGGTGATGAGGAGGAGGA 360
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 GCCGAAAGCCAAGCGGCGCTGCAGCTTGGCTGAGACGGTGAGCTTCGACGGCGAGACTCC 420
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 GGTCGCCGGAGCAGATTCAGGTGAAGGTTCAGAGAAAGAAGAATTAGCTGCGGATGCGAA 480
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 ACTGCGTCAGGAGAACGGCGGCATTCAGGCCACTTCGGAGGTCGCCAAGAGCACCAATCT 540
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 GAAGCGTGCCAGAAATCTGGCGGTCTCGATGGCCGGAAGAGCGGCTGCTCTGGCGAGGGA 600
consensus_9360#1 ------------------------------------------------------------
consensus_9360#0 GCTGAAGAACATCAAATCGGAGCTGCACTTCATGCAGGAGAGATGCGGTTTGCTTGAGGA 660
consensus_9360#1 ------------------------------------------------------AGAGGA 6
*****
consensus_9360#0 GGAGAACAAGAGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCT 720
consensus_9360#1 CGAGA-CAAGGGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCT 65
**** **** *************************************************
consensus_9360#0 GGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGC 780
consensus_9360#1 GGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGC 125
************************************************************
consensus_9360#0 CAACCTGTCCAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCATCAGCTGACCTC 840
consensus_9360#1 CAACCTGTCCAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCATCAGCTGACCTC 185
************************************************************
consensus_9360#0 CCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTCGTC 900
consensus_9360#1 CCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTTGTC 245
******************************************************** ***
consensus_9360#0 GCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGT 960
consensus_9360#1 GCCGCAAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGT 305
***** ******************************************************
consensus_9360#0 CACTCCATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAGATAAATCTGAGGAG 1020
consensus_9360#1 CACTCCATTTGATAAGTTGGAAGCCTTGGGGTCATTTGATGAGTAGATAAATTTGAGGAG 365
******** ******************** ***** **************** *******
consensus_9360#0 AATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATT 1080
consensus_9360#1 AATAAGCTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATTTTCTATT 425
**************************************************** *******
consensus_9360#0 TCTGCTGTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATATTTATGTGATCAAT 1140
consensus_9360#1 TCTGCTGTTGTATGATGCTTCAATTTGGCCCCTCTCGGTGGCCATATTTATGTGATCAAT 485
****************************** *****************************
consensus_9360#0 TCCACTTCGTAATGTTGACAATAACAAATGTGTGTTCTGAATCTTAAA---AAAAAAAA- 1196
consensus_9360#1 TCCCCTTTGTAATGTTGACAATAACAAATGTGTGTTTTGAATTTTAATTCTAAATAAAAT 545
*** *** **************************** ***** **** *** ****
consensus_9360#0 ----------AAAAAAAAAAAAAAAA 1212
consensus_9360#1 TTTAGTCTTTGGAAAAAAAAAAAAAA 571
**************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||