Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9363 cluster # 9363       Sequences # 6       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9363#0 length = 1040 sequences # 6  
consensusID : consensus_9363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1040
fasta sequence 
                              [CCCCCAAATCCCACTGCGAATTTCTCTCACAAATCAGGCGACGGCGAGTCTTTCTCCCACAAATCCGGCGAGGGCGACGACGATTGTGGGCTTCTGCTGTGGCGTGGCGACTGCTATCGTCGAGCATTCCTCATCCCGTCCCCTCGAGCGCTCCAAAATCCGGTAAATGCAATGACGATTTGGTGGATTCCGCGATGCCATCGACGACGGCGTCGGCGCTCGAACAACCTGGTGGTGCTGGAGCCGGTGGTGGGGTTCCACCGGCCGTTGCGGCACCCGGCCGTGCTCTCCTAGCACATGACCATGGCGCAGGTCGCCGACACCGTCGCGCTCCACCCCTGGCTCCTCGACCTCCTCCCGCTCCTCATCGTCCTCCTAATCTCCACCCACGTCCTCGTCCTCGTACATACTTCTCCTAGCCGAGAGAGCTCAAGGCCCCCGAGCGGCAGCTCAGTGTTGGTCCCGTGCCCGTCCGGAGCCCCGTCAGTGCAGGGCCAAGCTTTGAGAGAGTTACTACATCTAGAGAGGAATCAGGGAAAACTAAGTGAATACAAAACTAGGATGGTTAGACTAAAGCCAAAGGTACCTAAACTTATGTTTGGCAACATTGATAAGGGTTAACAAGTAATGAAACAATCAATACCGCGCTGCAACTAACGAGAAAAACTGAAAACCGGAAGAGAGTAGTACAACATGGAAGAAGAGAGATTTGAGAGAAGATTATGTAGAAGATGTAGAGCATCCTTGCTCAAAAAAGTGCAAAAATGTTAGAAAAGGAGATAGCTTACTCAATTGTAAACATCCGAACTAAAATTCATTTTAGGGACTCAAAGAAAGAGAAAAAGGAAGATGCAGCTTAGTGTATGAAGTCCAATTTGAGGGGTTGTTTGTGGTTTTTTTTTTTTCAAGAATTCATCACAGATCTATGAATTTGTGGGGAATATAAGCTTACATGTGAAGTTTGTGATTTGGGTATGCTTTTTTTGATGGACCTCAAATTTGAATTTGGGTATGAAACCCTAGACCTTCTCTAAAAAAAA]

[+] EMBL CF312298             [CCCCCAAATCCCACTGCGAATTTCTCTCACAAATCAGGCGACGGCGAGCCTTTCTCCCACAAATCCGGCGAGGGCGACGACGATTGTGGGCTTCTGCTGTGGCGTGGCGACTGCTATCGTCGAGCATTCCTCATCCCGTCCCCTCGAGCGCTCCAAAATCCGGTAAATGCAATGACGATTTGGTGGATTCCGCGATGCCATCGACGACGGCGTCGGCGCTCGAACAACCTGGTGGTGCTGGAGCCGGTGGTGAGGTTCCACCGGCCGTTGCGGCACCCGGCCGTGCTCTCCTAGCACATGACCATGGCGCAGGTCGCCGACACCGTCGCGCTCCACCCCTGGCTCCTCGACCTCCTCCCGCTCCTCATCGTCCTCCTAATCTCCACCCACGTCCTCGTCCTCGTACATACTTCTCCTAGCCGAGAGAGCTCAAGGCCCCCGAGCGGCAGCTCAGTGTTGGTCCCGTGCCCGTCCGGAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU095126             [                                ATCAGGCGACGGCGAGTCTTTCTCCCACAAATCCGGCGAGGGCGACGACGATTGTGGGCTTCTGCTGTGGCGTGGCGACTGCTATCGTCGAGCATTCCTCATCCCGTCCCCTCGAGCGCNCCAAAATCCGGTAAATGCAATGACGATTTGGTGGATTCCGCGATGCCATCGACGACGGCGTCGGCGCTCGAACAACCTGGTGGTGCTGGAGCCGGTGGTGGGGTTCCACCGGCCGTTGCGGCACCCGGCCGTGCTCTCCTAGCACATGACCATGGCGCAGGTCGCCGACACCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK063623             [                                     GCGACGGCGAGTCTTTCTCCCACAAATCCGGCGAGGGCGACGACGATTGTGGGCTTCTGCTGTGGCGTGGCGACTGCTATCGTCGAGCATTCCTCATCCCGTCCCCTCGAGCGCTCCAAAATCCGGTAAATGCAATGACGATTTGGTGGATTCCGCGATGCCATCGACGACGGCGTCGGCGCTCGAACAACCTGGTGGTGCTGGAGCCGGTGGTGGGGTTCCACCGGCCGTTGCGGCACCCGGCCGTGCTCTCCTAGCACATGACCATGGCGCAGGTCGCCGACACCGTCGCGCTCCACCCCTGGCTCCTCGACCTCCTCCCGCTCCTCATCGTCCTCCTAATCTCCACCCACGTCCTCGTCCTCGTACATACTTCTCCTAGCCGAGAGAGCTCAAGGCCCCCGAGCGGCAGCTCAGTGTTGGTCCCGTGCCCGTCCGGAGCCCCGTCAGCGCAGGGCCAAGCTTTGAGAGAGTTACTACATCTAGAGAGGAATCAGGGAAAACTAAGTGAATACAAAACTAGGATGGTTAGACTAAAGCCAAAGGTACCTAAACTTATGTTTGGCAACATTGATAAGGGTTAACAAGTAATGAAACAATCAATACCGCGCTGCAACTAACGAGAAAAACTGAAAACCGGAAGAGAGTAGTACAACATGGAAGAAGAGAGATTTGAGAGAAGATTATGTAGAAGATGTAGAGCATCCTTGCTCAAAAAAGTGCAAAAATGTTAGAAAAGGAGATAGCTTACTCAATTGTAAACATCCGAACTAAAATTCATT                                                                                                                                                                                                                             ]
[+] EMBL AU030755             [                                                     cnCCCACAAATCNGGNNNGGGCNACNANNATNGTGGGNTTCTGCTGTGGCGTGGCGACTGCTATCGTCGAGCATTCCTCATCCCGTCCCCTCGAGCGCTCCAAAATCCGGTAAATGCAATGACGATTTGGTGGATTCCGCGATGCCATCGACGACGGCGTCGGCGCTCGAACAACCTGGTGGTGCTGGAGCCGGTGGTGGGGTTCCACCGGCCGTTGCGGCACCCGGCCGTGCTCTCCTAGCACATGACCATGGCGCAGGTCGCCGACACCGTCGCGCTCCACCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF311859             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGCGGCAGCTCAGTGTTGGTCCCGTGCCCGTCCGGAGCCCCGTCAGTGCAGGGCCAAGCTTTGAGAGAGTTACTACATCTAGAGAGGAATCAGGGAAAACTAAGTGAATACAAAACTAGGATGGTTAGACTAAAGCCAAAGGTACCTAAACTTATGTTTGGCAACATTGATAAGGGTTAACAAGTAATGAAACAATCAATACCGCGCTGCAACTAACGAGAAAAACTGAAAACCGGAAGAGAGTAGTACAACATGGAAGAAGAGAGATTTGAGAGAAGATTATGTAGAAGATGTAGAGCATCCTTGCTCAAAAAAGTGCAAAAATGTTAGAAAAGGAGATAGCTTACTCAATTGTAAACATCCGAACTAAAATTCATTTTAGGGACTCAAAGAAAGAGAAAAAGGAAGATGCAGCTTAGTGTATGAAGTCCAATTTGAGGGGTTGTTTGTGGTTTTTTTTTTTTCAAGAATTCATCACAGATCTATGAATTTGTGGGGAATATAAGCTTACATGTGAAGTTTGTGATTTGGGTATGCTTTTTTTGATGGACCTCAAATTTGAATTTGGGTATGAAACCCTAGACCTTCTCTAAAAAAAA]
[-] EMBL CF312299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCGTGCCCGTCCGGAGCCCCGTCAGTGCAGGGCCAAGCTTTGAGAGAGTTACTACATCTAGAGAGGAATCAGGGAAAACTAAGTGAATACAAAACTAGGATGGTTAGACTAAAGCCAAAGGTACCTAAACTTATGTTTGGCAACATTGATAAGGGTTAACAAGTAATGAAACAATCAATACCGCGCTGCAACTAACGAGAAAAACTGAAAACCGGAAGAGAGTAGTACAACATGGAAGAAGAGAGATTTGAGAGAAGATTATGTAGAAGATGTAGAGCATCCTTGCTCAAAAAAGTGCAAAAATGTTAGAAAAGGAGATAGCTTACTCAATTGTAAACATCCGAACTAAAATTCATTTTAGGGACTCAAAGAAAGAGAAAAAGGAAGATGCAGCTTAGTGTATGAAGTCCAATTTGAGGGGTTGTTTGTGGTTTTTTTTTTTTCAAGAATTCATCACAGATCTATGAATTTGTGGGGAATATAAGCTTACATGTGAAGTTTGTGATTTGGGTATGCTTTTTTTGATGGACCTCAAATTTGAATTTGGGTATGAAACCCTAGACCTTCTCTAAAAAAAA]




>consensus_9363#0
CCCCCAAATCCCACTGCGAATTTCTCTCACAAATCAGGCGACGGCGAGTCTTTCTCCCAC
AAATCCGGCGAGGGCGACGACGATTGTGGGCTTCTGCTGTGGCGTGGCGACTGCTATCGT
CGAGCATTCCTCATCCCGTCCCCTCGAGCGCTCCAAAATCCGGTAAATGCAATGACGATT
TGGTGGATTCCGCGATGCCATCGACGACGGCGTCGGCGCTCGAACAACCTGGTGGTGCTG
GAGCCGGTGGTGGGGTTCCACCGGCCGTTGCGGCACCCGGCCGTGCTCTCCTAGCACATG
ACCATGGCGCAGGTCGCCGACACCGTCGCGCTCCACCCCTGGCTCCTCGACCTCCTCCCG
CTCCTCATCGTCCTCCTAATCTCCACCCACGTCCTCGTCCTCGTACATACTTCTCCTAGC
CGAGAGAGCTCAAGGCCCCCGAGCGGCAGCTCAGTGTTGGTCCCGTGCCCGTCCGGAGCC
CCGTCAGTGCAGGGCCAAGCTTTGAGAGAGTTACTACATCTAGAGAGGAATCAGGGAAAA
CTAAGTGAATACAAAACTAGGATGGTTAGACTAAAGCCAAAGGTACCTAAACTTATGTTT
GGCAACATTGATAAGGGTTAACAAGTAATGAAACAATCAATACCGCGCTGCAACTAACGA
GAAAAACTGAAAACCGGAAGAGAGTAGTACAACATGGAAGAAGAGAGATTTGAGAGAAGA
TTATGTAGAAGATGTAGAGCATCCTTGCTCAAAAAAGTGCAAAAATGTTAGAAAAGGAGA
TAGCTTACTCAATTGTAAACATCCGAACTAAAATTCATTTTAGGGACTCAAAGAAAGAGA
AAAAGGAAGATGCAGCTTAGTGTATGAAGTCCAATTTGAGGGGTTGTTTGTGGTTTTTTT
TTTTTCAAGAATTCATCACAGATCTATGAATTTGTGGGGAATATAAGCTTACATGTGAAG
TTTGTGATTTGGGTATGCTTTTTTTGATGGACCTCAAATTTGAATTTGGGTATGAAACCC
TAGACCTTCTCTAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)