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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1102 fasta sequence
[CCACACTCGAGCTCCTGCACCAGAACCTAAGCAACTGCCCTGTCGGACAAGTAGTAGGAGAGCGACTAATTGTAGTAGTAAGACAGTTGCAGGGCTTGATGCGTCAGGGAGTGTGGTGAGGAACCAGCTTGCACAGAACATTGTACAGGAGGGTAGTTCCAGTGTGATTTCAAGGACACCATGTCAGGAGCTACCGCTCTCAATTAGGTTGACGGACCAACAAAACGAGCATCACCTTGTGAATGGTTCGTCTAATTCTGAGAACTTAGTGAAGGTACCTCCATCTCAGGGTGGCCAGGTAACTGCAGCCAAAAAGCGTAAATCTGGAAATGTGAGGAGGTTTGAGCAGAATAAACCAACACAAGGACAAGGAGAATGTGGAGCATTAGTGGTGGCTGAGGATGTNGGTTCCACTGAAGGAGAAACTGGCGATAAGAAAAAGACAGAGGG-CTGTCCTAACCGAGTTCATATCACCAAGATCATCAAGCCAGTGCGATTTGCAGCAGCTGTGAACCACGATGTGCAGCAAGTTTCATTTACATTCAAAAGCACTCAGGTCTGATGGGCAGGAAGTCATGGTGGACGACAAAGAATTGAAAGCCAATAATCCCTTGCTGCTTATTAGCTACTACGAGCAGTGCCTTCGTTATAAT-CCGACTTCGTGAGAGATGAACTGAAGGAACTGGGTTTAGCTGCCTGTGTATTTAATTAGCATTTGTGTGTTTAGAAGCTTGTAGCTCTATGGGCTTGATAATTTAGTCTGGTCTTGCAGTAGGTTGCTAAATGCAAGAAATGTATTGCTTGGTCTCCCCACTGATTGCTTATTCGCGCCATCTTATGTGTAACATTTTGAACAGTGGGGAGATATGTGTAATCTATGCTTAGGGATCTTATGTTTCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCATAGACGGTAATGACTGAGAAGCTCGTGAATTTCGTGTGATGAATGCATATCCNGTAGANCTGAAAAAAAAAAGTAATTTTCGTTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA753432 [CCACACTCGAGCTCCTGCACCAGAACCTAAGCAACTGCCCTGTCGGACAAGTAGTAGGAGAGCGACTAATTGTAGTAGTAAGACAGTTGCAGGGCTTGATGCGTCAGGGAGTGTGGTGAGGAACCAGCTTGCACAGAACATTGTACAGGAGGGTAGTTCCAGTGTGATTTCAAGGACACCATGTCAGGAGCTACCGCTCTCAATTAGGTTGACGGACCAACAAAACGAGCATCACCTTGTGAATGGTTCGTCTAATTCTGAGAACTTAGTGAAGGTACCTCCATCTCAGGGTGGCCAGGTAACTGCAGCCAAAAAGCGTAAATCTGGAAATGTGAGGAGGTTTGAGCAGAATAAACCAACACAAGGACAAGGAGAATGTGGAGCATTAGTGGTGGCTGAGGATGTNGGTTCCACTGAAGGAGAAACTGGCGATAAGAAAAAGACAGAGGG CTGTCCTAACCGAGTTCATATCACCAAGATCATCAAGCCAGTGCGATTTGCAGCAGCTGTGAACCACGATGTGCAGCAAGTTTCATTTACATTCAAAAGCACT ]
[+] EMBL BI804946 [ AAGAAAAAGACAGAGGGCCTGTCCTAACCGAGTTCATATCACCAAGATCATCAAGCCAGTGCGATTTGCAGCAGCTGTGAACAACGATGTGCAGCAAGTTTCAATTACATTC AAAGCACTCAGGTCTGATGGGCAGGAAGTCATGGTGGACGACAAAGAATTGAAAGCCAATAATCCCTTGCTGCTTATTAGCTACTACGAGCAGTGCCTTCGTTATAAT CCGACTTCGTGAGAGATGAACTGAAGGAACTGGGTTTAGCTGCCTGTGTATTTAATTAGCATTTGTGTGTTTAGAAGCTTGTAGCTCTATGGGCTTGATAATTTAGTCTGGTCTTGCAGTAGGTTGCTAAATGCCAGAAATGTATTGCTTGGTCTCCCC CTGATTGCTTATTCGCGCCATCTTATGTGTAACATTTTGAACAGTGGGGAGATATGTGTAATCTATGCTTAGGGATCTTATGTTTCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCAaaaa ]
[+] EMBL AU095244 [ ACTACGAGCAGTGCCTTCGTTATAATCCCGACTTCGTGAGAGATGAACTGAAGGAACTGGGTTTAGCTGCCTGTGTATTTAATTAGCATTTGTGTGTTTAGAAGCTTGTAGCTCTATGGGCTTGATAATTTAGTCTGGTCTTGCAGTAGGTTGCTAAATGCAAGAAATGTATTGCTTGGTCTCCCCACTGATTGCTTATTCGCGCCATCTTATGTGTAACATTTTGAACAGTGGGGAGATATGTGTAATCTATGCTTAGGGATCTTATGTTTCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCATAGACGGTAATGACTGAGAAGCTCGTGAATTTCGTGTGATGAATGCATATCCNGTAGANCTGAAAAAAAAAA ]
[+] EMBL CA999060 [ GGGCTTGATAATTTAGTCTGGTCTTGCAGTAGGTTGCTAAATGCAAGAAATGTATTGCTTGGTCTCCCCACTGATTGCTTATTCGCGCCATCTTATGTGTAACATTTTGAACAGTGGGGAGATATGTGTAATCTATGCTTAGGGATCTTATGTTTCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCATAGACGGTAATGACTGAGAAGCTCGTGAATTTCGTGTGATGAATGCATATCCAGTAGAACTGAATAAACTGCGTAATTTTCGTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence
[AGGCGGCGGCGCCTGTGGTGGATGGCTCCCCGCCGAAGCTGGCGGAGGGGTACTACGAGATCGAGGACATCCGCCGCCGCCGCCTCCGCAAGGGGAAGCTCCAGTACCTTGTCAAATGGCGTGGATGGCCGGAAAGTGCTAACACATGGGAGCCCCTAGAAAACCTGAGTGCCTGCTCTGACATTATTGATGCTTTCGAGATGCGGTTACAATCTCCAAGGCCCGGTCGGAAGCGTAAGCG-GAAGATAACAACTACTCCAGTAGCAGGCTCAAACCCATCTCATGGTAAACGGGGCCGCCCTCGCTTGGATGCTAAGTCCCACACT-CGAGCTCCTGCACCAGAACCTAAGCAACTGCCCTGTCGGACAAGTTGTAGGAGAGCGACTAATTGTAGTAGTAAGACAGTTGCAGGGCTTGATGCGTCAGGGAGTGTGGTGAGGAACCAGCTTGCACAGAACATTGTACAGGAGGGTAGTTCAGTGTGATTTCAAGGACACCATGTCAGGAACTACCGNTCTCAATTAGGTTGCNGACCAACAAAACGAGCATNACTTGNGAATGGGTCGCTAATCTGAGAACTTANTGAAGGTCCTTCATNTTAAGGTGGNCAGGTACTGGTGCCAAGAACGTAAATTTGGAATGTGAGAGGTTTAGCCGAATAACACCCCAGGGCAAGGANATNGGACATTATGGGGGTTAAGATGTGGTTCCTTGA]
[+] EMBL BP184395 [AGGCGGCGGCGCCTGTGGTGGATGGCTCCCCGCCGAAGCTGGCGGAGGGGTACTACGAGATCGAGGACATCCGCCGCCGCCGCCTCCGCAAGGGGAAGCTCCAGTACCTTGTCAAATGGCGTGGATGGCCGGAAAGTGCTAACACATGGGAGCCCCTAGAAAACCTGAGTGCCTGCTCTGACATTATTGATGCTTTCGAGATGCGGTTACAATCTCCAAGGCCCGGTCGGAAGCGTAAGCG GAAGATAACAACTACTCCAGTAGCAGGCTCAAACCCATCTCATGGTAAACGGGGCCGCCCTCGCTTGGATGCTAAGTCCCACACT CGAGCTCCTGCACCAGAACCTAAGCAACTGCCCTGTCGGACAAGTTGTAGGAGAGCGACTAATTGTAGTAGTAAGACAGTTGCAGGGCTTGATGCGTCAGGGAGTGTGGTGAGGAACCAGCTTGCACAGAACATTGTACAGGAGGGTAGTTCAGTGTGATTTCAAGGACACCATGTCAGGAACTACCGNTCTCAATTAGGTTGCNGACCAACAAAACGAGCATNACTTGNGAATGGGTCGCTAATCTGAGAACTTANTGAAGGTCCTTCATNTTAAGGTGGNCAGGTACTGGTGCCAAGAACGTAAATTTGGAATGTGAGAGGTTTAGCCGAATAACACCCCAGGGCAAGGANATNGGACATTATGGGGGTTAAGATGTGGTTCCTTGA]
[+] EMBL AU031122 [ GCGGCGCCTGTGGTGGATGGCTCCCCGCCGAAGCTGGCGGAGGGGTACTACGAGATCGAGGACATCCGCCGCCGCCGCCTCCGCAAGGGGAAGCTCCAGTACCTTGTCAAATGGCGTGGATGGCCGGAAAGTGCTAACACATGGGAGCCCCTAGAAAACCTGAGTGCCTGCTCTGACATTATTGATGCTTTCGAGATGCGGTTACAATCTCCAAGGCCCGGTCGGAAGCGTAA CGNNAAGATAACAACTACTCCAGTAGCAGGCTCAAACCCATCTCATGGTAAACGGGGCCGCCCTCGCTTGGATGCTAAGTCCCACACTNCGAGCTCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9367#0 CCACACTCGAGCTCCTGCACCAGAACCTAAGCAACTGCCCTGTCGGACAAGTAGTAGGAG 60
consensus_9367#1 ------------------------------------------------------------
consensus_9367#0 AGCGACTAATTGTAGTAGTAAGACAGTTGCAGGGCTTGATGCGTCAGGGAGTGTGGTGAG 120
consensus_9367#1 --------------------------------------AGGCGGCGGCGCCTGTGGTGGA 22
* *** * * * *******
consensus_9367#0 GAACCAGCTTGCACAGAACATTGTACAGGAGGGTAGTTCCAGTGTGATTTCAAGGACACC 180
consensus_9367#1 TGGCTCCC---CGCCGAAGCTGGCGGAGGGG--------TACTACGAGATCGAGGACA-- 69
* * * * *** * * *** * * * ** ** ******
consensus_9367#0 ATGTCAGGAGCTACCGCTCTCAATTAGGTTGACGGACCAACAAAACGAGCATCACCTTGT 240
consensus_9367#1 ---TCCGCCGCCGCCGCCTCCGC--------------------AAGGGGAAGCTCC---- 102
** * ** **** * ** * * * * **
consensus_9367#0 GAATGGTTCGTCTAATTCTGAGAACTTAGTGAAGGTACCTCCATCTCAGGGTGGCCAGGT 300
consensus_9367#1 -AGTACCTTGTCAAATGGCGTGGATGGCCGGAAAGTGCTAACACATGGGAGCCCCTAGAA 161
* * * *** *** * * * *** ** * ** * * * * **
consensus_9367#0 AACTGCAGCCAAAAAGCGTAAATCTGGAAATGTGAGGAGGTTTGAGCAGAATAAACCAAC 360
consensus_9367#1 AACCTGAGT------GCCTGC-TCTGACATTATTGATGCTTTCGAGATGCGGTTACAATC 214
*** ** ** * **** * * * ** *** * ** * *
consensus_9367#0 ACAAGGACAAGGAGAATGTGGAGCATTAGTGGTGGCTGAGGATGTNGGTTCCACTGAAGG 420
consensus_9367#1 TCCAAGGCCCGG----TCGGAAGCGTAAGCGGAAGATAACAA--CTACTCCAGTAGCAGG 268
* * * * ** * * *** * ** ** * * * * * * * ***
consensus_9367#0 AG-AAACTGGCGATAAGAAAAAGACAGAGGGCTGTCCTAACCGAGTTCATATCACCAAGA 479
consensus_9367#1 CTCAAACCCATCTCATGGTAAACG----GGGCCGCCCTCGCTTGGATGCTAAGTCCCACA 324
**** * * *** **** * *** * * * ** ** * *
consensus_9367#0 TCATCAAGCCAGTGCGATTTGCAGCAGCTGTG-AACCACGATGTGCAGCAAGTTTCATTT 538
consensus_9367#1 C--TCGAGCTCCTGCA----CCAGAACCTAAGCAACTGCCCTGTCGGACAAGTTGTAG-- 376
** *** *** *** * ** * *** * *** ****** *
consensus_9367#0 ACATTCAAAAGCACTCAGGTCTGATGGGCAGGAAGTCATGGTGGACGACAAAGAATTGAA 598
consensus_9367#1 ------GAGAGCGACTAATTGTAGTAGTAAGACAGTTGCAGGGCTTGATGCGTCAGGGAG 430
* *** * * * * * ** *** * * ** * **
consensus_9367#0 AGCCAATAATCCCTTGCT-GCTTATTAGCTACTACGAGCAGTGCCTTCGTTATAATCC-- 655
consensus_9367#1 TGTGGTGAGGAACCAGCTTGCACAGAACATTGTACAGGAGGGTAGTTCAGTGTGATTTCA 490
* * * *** ** * * * *** * * *** * * **
consensus_9367#0 --GACTTCGTGAGAGATGAACTGAAGGAACTGGGTTTAGCTGCCTGTGTATTTAATTAGC 713
consensus_9367#1 AGGACACCATGTCAG--GAACT-ACCGNTCTCAATTAGGTTGCNGACCAACAAAACGAGC 547
*** * ** ** ***** * * ** ** * *** * ** ***
consensus_9367#0 ATTTGTGTGTTTAGAAGCTTGTAGCTCTATGGGCTTGATAATTTAGTCTGGTCTTGCAGT 773
consensus_9367#1 ATN-ACTTGNGAATGGG-TCGCTAATCTGAGAACTTANTGAAGGTCCTTCATNTTAAGGT 605
** ** * * * * *** * *** * * * * ** **
consensus_9367#0 AGGTTGCTA--AATGCAAGAAATGTATTGCTTGGTCTCCCCACTGATTGCTTATTCGCGC 831
consensus_9367#1 GGNCAGGTACTGGTGCCAAGAACGTAA-ATTTGGAATGTGAGAGGTTTAGCCG--AATAA 662
* * ** *** * ** *** **** * * **
consensus_9367#0 CATCTTATGTGTAACATTTTGAACAGTGGGGAGATATGTGTAATCTATGCTTAGGGATCT 891
consensus_9367#1 CACCCCAGGGCAAGGANATNGGACATTATGGGGGT-TAAGATGTGGTTCCTTGA------ 715
** * * * * * * * *** * ** * * * * * * ***
consensus_9367#0 TATGTTTCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCTTTTC 951
consensus_9367#1 ------------------------------------------------------------
consensus_9367#0 TCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCATAGACGGTAATGACTGA 1011
consensus_9367#1 ------------------------------------------------------------
consensus_9367#0 GAAGCTCGTGAATTTCGTGTGATGAATGCATATCCNGTAGANCTGAAAAAAAAAAGTAAT 1071
consensus_9367#1 ------------------------------------------------------------
consensus_9367#0 TTTCGTTAAAAAAAAAAAAAAAAAAAAAAAA 1102
consensus_9367#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||