These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 785 fasta sequence [AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT-CCATGCCAATGCCAAGAGTCAGTG-TTTCATCGGTAGAGCTAGAG-AAGAAGATAGGTTTT-CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAAGAAACTAAAAAA] [+] EMBL CA764215 [AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTT GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGNGATGATACTAAATATATCTATATTTTCAGGTAATTTTGGTGTAAAAANTAGCTATCTTTTGGTGCTGAATGAACAAGGCCGGCGNTTAATTT ] [+] EMBL AU031230 [ CCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTGTTTTCATCGGTAGAGCTAGAGNAGGAAGATAGGTTTTCCGAATCAATGT ] [+] EMBL AU095353 [ AAATAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTT CGGAG AAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATNAGAAGAAAGCAACNACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAA TGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGG GTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCT ACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCT ] [+] EMBL AU031231 [ cCAAGGTATCTCAGGANCCTGAACAGCTGGGCNGCACTAGCAGTTCCCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAA ] [+] EMBL AU031410 [ TCAGGAGCNTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCNCGACGTCCTTGATGCT ACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAATATTCGTGCAAAGAAACTAAAAAA] consensusID : consensus_9372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCAGGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCAGTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTACTTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGCGCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATATTCGTGCAAAGAATCTAAATTGTA] [+] EMBL AK062951 [AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCAGGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCAGTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTACTTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGCGCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATATTCGTGCAAAGAATCTAAATTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9372#0 AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTC 60 consensus_9372#1 -------------------------------------------AGCAGCTGGTCTCTCTC 17 ***************** consensus_9372#0 TTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAG 120 consensus_9372#1 TTGATTTGTGTTTCCCCAGAGAGAGA----------------TCTAGGGAGAGATGTCAG 61 *************** *** ***** ** *************** consensus_9372#0 GGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATG 180 consensus_9372#1 GGAAAGATCAAAAGAAAGCAGCA---GCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTG 118 **** ***** ********* ** ****************************** ** consensus_9372#0 TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCA 240 consensus_9372#1 TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCA 178 ************************************* ********************** consensus_9372#0 AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA 300 consensus_9372#1 AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA 238 ************************************************************ consensus_9372#0 TGCCAATGCCAAGAGTCAGTGTTTCATCGGTAGAGCTAGAGAAGAAGATAGGTTTTCGAA 360 consensus_9372#1 TGCCAATGCCAAGAA--------------GTGAAGCTGCAGA------------------ 266 ************** ** **** *** consensus_9372#0 TCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCG 420 consensus_9372#1 -----------------------------------------------------------G 267 * consensus_9372#0 AGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTC 480 consensus_9372#1 AGAAGCGTGG---------------------------ATGAGCAAATGG--------TTC 292 ** *** *** ** *** * * *** consensus_9372#0 GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAA 540 consensus_9372#1 GGCATGCAGTGCT--------GC-------AAGCCATCAAGAAATGCATGGACGGATCAT 337 * * ** ** *** ** **** *** * ** **** * * consensus_9372#0 TGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGAT 600 consensus_9372#1 CAATTTG---------------ATCCAGAATGAACTACTTT-----ATGTTTAGTTCTA- 376 ** * * *** * *** * * ** ** * * ** * consensus_9372#0 CCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTG 660 consensus_9372#1 -AAAAAAGTACTTTATGTTTCGACTTAA-TACTCATCTGCCGTAGCGCAAGCTTATTGTG 434 * ** * * ***************** * ******************* ********* consensus_9372#0 ATGATACTAAATA------TATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCT-A 713 consensus_9372#1 AGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCA 494 * *********** *********************************** *** * consensus_9372#0 TCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAA 773 consensus_9372#1 TCTCTTGGTGCTGAATGAACAAGAACGGCGT----TTTGTCGTTTAAATATTCGTGCAAA 550 *** ******************* ****** ************* * ******** consensus_9372#0 GAAACTAAAAAA-- 785 consensus_9372#1 GAATCTAAATTGTA 564 *** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||