Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9374 cluster # 9374       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9374#0 length = 1475 sequences # 1  
consensus_9374#1 length = 1388 sequences # 4  
consensus_9374#2 length = 258 sequences # 1  

consensusID : consensus_9374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1475
fasta sequence
                              [ACGAGGGAGAACTTATTCTCCCTCCACTCACACTCCTCGCCTCGCCTCGCCTCACTTGTACCCTTCGATTCTCTCCCGTTTCGTCGCCCTCCAGAGCTCGTGGATCTCTCACTTCGGGGCGGGCGCGCGCTAGCACAATGTTCACCGGATGTGGTCTCTTCGCCTGCGTGCGCCGGTGCGATGGCGGCGACGTCAGGAAGCGCGGGGAGGCAGGTGCAATGAGCTCGCGGGTGGCGGCCGATCCGGCCGGCGTGGAGGAGGAAGGGAGCTGCAAGAACGTCGCCGCCGCGTCGGCGAGGCAGCTCGCGTGGGCGGACGTGGAGTCCGTCACGGGGGGGTTCTCGTCCCGGGTGATCGGGCACGGCGGGTTCAGCACGGTGTACCTCGCGTCGCTCTCGTCCTCCCGCCTCGGCGCCGTCAAGGTCCACTGCAGCAGCGAGCGCCTGCACCGCGCCTTCCGCCAGGAGCTCGAGGTGCTCCTCTCCCTCCGCCACCCGCACATCGTCCGCCTGCTCGGCTACTGCGACGAACGAGATGAAGGTGTGCTGGTGTTCGAGTACGCGCCGAATGGTGACCTCCACGAACGGCTCCACTGCAGCGAGGTCGCGGGCGGCGTGGCGTCGGTGCTGCCCTGGGCGCGGCGCGTGGCGATTGCGTTCCAGGTGGCCATGGCGCTGGAGTATCTCCACGAGAGCCGCCACCCGGCGGTCATCCACGGGGACATCAAGGCGTCCAACGTCCTCCTCGACGCCAACATGAACGCCAAGCTCTGCGACTTCGGCTTCGCCCACGTCGGCTTCTCGGCCACGGTGGGGTGCAGGCCGTCGGCGCGCGCCGTCATGGGCTCCCCGGGATACGTAGACCCACACCTCATCCGCTCCGGCGTGGCCACGAAGAAGAGCGACGTGTACAGCTTCGGGGTGCTGCTGCTCGAGCTCGTGACGGGGAAGGAGGCCGTCTGCCGCGACACCGGGCGGCGTCTCACTGCCGCCGTAGGTCCCATGCTCAGCGAAGGGAAGGTGGCCGACGTTGTCGACCGGAGGCTCGGAGGCGAGCACGACGGCGCAGAGGCGGCTGTCATGGCGGAGCTCGCCATGCAGTGCATCGGCGACAGCCCCGGGCTGAGGCCGTCCATGGCCGACGTGGTGCGCGCGCTCCAGGAGAAGACCTCCGCGTTGGCTTCGGCCGTTGGATCGAGATTGGACCGCAAGATGATGTTTTAACTTTTCTGGGTGTAGACTGTGAATAGTACCAGTATTTTAGGGTAGGTAGGAGAAGAATGTGTGTACTGTGTAGTTTGAGAAGGTAGATTAGTTTAAGCCTTTGGATCAGATAGAAAATTTTGTGATGTCATGGCATCTTGTAGCACCAGTGAACGTATATTAGTAGTTCAGTAATTAAATTCTTTCCTTGTAGATCGCGTGTATTAGGTAGTAGTACTTTAGATGGTTGGTGGTGGACAAGCAATTTGGTTT]

[+] EMBL AK066397             [ACGAGGGAGAACTTATTCTCCCTCCACTCACACTCCTCGCCTCGCCTCGCCTCACTTGTACCCTTCGATTCTCTCCCGTTTCGTCGCCCTCCAGAGCTCGTGGATCTCTCACTTCGGGGCGGGCGCGCGCTAGCACAATGTTCACCGGATGTGGTCTCTTCGCCTGCGTGCGCCGGTGCGATGGCGGCGACGTCAGGAAGCGCGGGGAGGCAGGTGCAATGAGCTCGCGGGTGGCGGCCGATCCGGCCGGCGTGGAGGAGGAAGGGAGCTGCAAGAACGTCGCCGCCGCGTCGGCGAGGCAGCTCGCGTGGGCGGACGTGGAGTCCGTCACGGGGGGGTTCTCGTCCCGGGTGATCGGGCACGGCGGGTTCAGCACGGTGTACCTCGCGTCGCTCTCGTCCTCCCGCCTCGGCGCCGTCAAGGTCCACTGCAGCAGCGAGCGCCTGCACCGCGCCTTCCGCCAGGAGCTCGAGGTGCTCCTCTCCCTCCGCCACCCGCACATCGTCCGCCTGCTCGGCTACTGCGACGAACGAGATGAAGGTGTGCTGGTGTTCGAGTACGCGCCGAATGGTGACCTCCACGAACGGCTCCACTGCAGCGAGGTCGCGGGCGGCGTGGCGTCGGTGCTGCCCTGGGCGCGGCGCGTGGCGATTGCGTTCCAGGTGGCCATGGCGCTGGAGTATCTCCACGAGAGCCGCCACCCGGCGGTCATCCACGGGGACATCAAGGCGTCCAACGTCCTCCTCGACGCCAACATGAACGCCAAGCTCTGCGACTTCGGCTTCGCCCACGTCGGCTTCTCGGCCACGGTGGGGTGCAGGCCGTCGGCGCGCGCCGTCATGGGCTCCCCGGGATACGTAGACCCACACCTCATCCGCTCCGGCGTGGCCACGAAGAAGAGCGACGTGTACAGCTTCGGGGTGCTGCTGCTCGAGCTCGTGACGGGGAAGGAGGCCGTCTGCCGCGACACCGGGCGGCGTCTCACTGCCGCCGTAGGTCCCATGCTCAGCGAAGGGAAGGTGGCCGACGTTGTCGACCGGAGGCTCGGAGGCGAGCACGACGGCGCAGAGGCGGCTGTCATGGCGGAGCTCGCCATGCAGTGCATCGGCGACAGCCCCGGGCTGAGGCCGTCCATGGCCGACGTGGTGCGCGCGCTCCAGGAGAAGACCTCCGCGTTGGCTTCGGCCGTTGGATCGAGATTGGACCGCAAGATGATGTTTTAACTTTTCTGGGTGTAGACTGTGAATAGTACCAGTATTTTAGGGTAGGTAGGAGAAGAATGTGTGTACTGTGTAGTTTGAGAAGGTAGATTAGTTTAAGCCTTTGGATCAGATAGAAAATTTTGTGATGTCATGGCATCTTGTAGCACCAGTGAACGTATATTAGTAGTTCAGTAATTAAATTCTTTCCTTGTAGATCGCGTGTATTAGGTAGTAGTACTTTAGATGGTTGGTGGTGGACAAGCAATTTGGTTT]


>consensus_9374#0 ACGAGGGAGAACTTATTCTCCCTCCACTCACACTCCTCGCCTCGCCTCGCCTCACTTGTA CCCTTCGATTCTCTCCCGTTTCGTCGCCCTCCAGAGCTCGTGGATCTCTCACTTCGGGGC GGGCGCGCGCTAGCACAATGTTCACCGGATGTGGTCTCTTCGCCTGCGTGCGCCGGTGCG ATGGCGGCGACGTCAGGAAGCGCGGGGAGGCAGGTGCAATGAGCTCGCGGGTGGCGGCCG ATCCGGCCGGCGTGGAGGAGGAAGGGAGCTGCAAGAACGTCGCCGCCGCGTCGGCGAGGC AGCTCGCGTGGGCGGACGTGGAGTCCGTCACGGGGGGGTTCTCGTCCCGGGTGATCGGGC ACGGCGGGTTCAGCACGGTGTACCTCGCGTCGCTCTCGTCCTCCCGCCTCGGCGCCGTCA AGGTCCACTGCAGCAGCGAGCGCCTGCACCGCGCCTTCCGCCAGGAGCTCGAGGTGCTCC TCTCCCTCCGCCACCCGCACATCGTCCGCCTGCTCGGCTACTGCGACGAACGAGATGAAG GTGTGCTGGTGTTCGAGTACGCGCCGAATGGTGACCTCCACGAACGGCTCCACTGCAGCG AGGTCGCGGGCGGCGTGGCGTCGGTGCTGCCCTGGGCGCGGCGCGTGGCGATTGCGTTCC AGGTGGCCATGGCGCTGGAGTATCTCCACGAGAGCCGCCACCCGGCGGTCATCCACGGGG ACATCAAGGCGTCCAACGTCCTCCTCGACGCCAACATGAACGCCAAGCTCTGCGACTTCG GCTTCGCCCACGTCGGCTTCTCGGCCACGGTGGGGTGCAGGCCGTCGGCGCGCGCCGTCA TGGGCTCCCCGGGATACGTAGACCCACACCTCATCCGCTCCGGCGTGGCCACGAAGAAGA GCGACGTGTACAGCTTCGGGGTGCTGCTGCTCGAGCTCGTGACGGGGAAGGAGGCCGTCT GCCGCGACACCGGGCGGCGTCTCACTGCCGCCGTAGGTCCCATGCTCAGCGAAGGGAAGG TGGCCGACGTTGTCGACCGGAGGCTCGGAGGCGAGCACGACGGCGCAGAGGCGGCTGTCA TGGCGGAGCTCGCCATGCAGTGCATCGGCGACAGCCCCGGGCTGAGGCCGTCCATGGCCG ACGTGGTGCGCGCGCTCCAGGAGAAGACCTCCGCGTTGGCTTCGGCCGTTGGATCGAGAT TGGACCGCAAGATGATGTTTTAACTTTTCTGGGTGTAGACTGTGAATAGTACCAGTATTT TAGGGTAGGTAGGAGAAGAATGTGTGTACTGTGTAGTTTGAGAAGGTAGATTAGTTTAAG CCTTTGGATCAGATAGAAAATTTTGTGATGTCATGGCATCTTGTAGCACCAGTGAACGTA TATTAGTAGTTCAGTAATTAAATTCTTTCCTTGTAGATCGCGTGTATTAGGTAGTAGTAC TTTAGATGGTTGGTGGTGGACAAGCAATTTGGTTT



consensusID : consensus_9374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1388
fasta sequence
                              [TACTCGTGACATCGTGTGTNTGCGTGTGCGCGACGCGCGCGGNCAAGATGTTGGACGGGTGCGGCCTCTTGGCGTTTGCCCGCTGCTGCTGCGTGGGAGGCGGCGAGATGGAGAGCGATGCACGCGTGTCGGACGAGCCGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCGGGGTCGGTGGTGGAGAAGGGCGGCGGGGTGGTGGCGAGGCGGTTCGGGTGGGCGGAGATCGAGTCGGTCACGGGCGGATTCTCGTCCCGGGTGATCGGGCAGGGCGGGTTCAGCACCGTGTACCTCGCGTCGCTCACCTCCTCCCGCCTCGGCGCCGTCAAGGTGCAGCGCAGCAGCGAGCGCCTCCACCGCGCCTTCTGCCAGGAGCGCGACGTGCTCCTCTCCCTCCGCCACCCCCACGTCGTCCGCCTCCTCGGCTACTGCGACGAACGAGATGAGGGTGTATTGGTGTTCGAGTACGCACCGAACGGCGACCTCCACGAGAGGCTCCACCACCGGAGCGGCGGGAAGAGCCGGACGGTGCTGCCGTGGGCGCGGCGCATGGCCGTCGCGTTCCAGGTGGCGATGGCGCTGGAGTACCTCCACGAGAGCCGGGACCCCGCCGTCATCCACGGCGACATCAAGTCCTCGAACGTGCTGCTCGACGCCAACCACGACGCCAAGCTCTGCGACTTCGGCTTCGCGCACGTCGGGTTCTCGGCCGCGGTCCGCCCGCCGTCCGGCGCCACCAGGGCGTGGGGCCGCCCCGTCATGGGCTCCCCGGGATACGCGGACCCGCACTTCCTCCGCTCCGGCGTGGCCACCAAGAAGAGCGACGTGTACAGCTTCGGCGTGCTGCTGCTCGAGCTCGTCACCGGGCGGGAGGCCATCTGCGCCCAGACGGGGCACCGGCTCACCGCCGCCGTGGGGCCCTCGATCGGCGAGGGCAAGCTGGCCGACGTGGTGGACCGGAGGTTGGGAGGTGACTACGACGTCGAGGAGGCCGCCACCGTGGCGGCGCTGGCGCTGCGGTGCGTCAGCGACGGCACCGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAAATAGCATGTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCATGGATGCGGTTATTGTAGGCATGTAGTGGCCCATTAACAAGGGATCTTGTACATGTTGTTGAAAAGATATACATGATTTACCTAATCTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSR08572A            [TACTCGTGACATCGTGTGTNTGCGTGTGCGCGACGCGCGCGGNCAAGATGTTGGACGGGTGCGGCCTCTTGGCGTTTGCCCGCTGCTGCTGCGTGGGAGGCGGCGAGATGGAGAGCGATGCACGCGTGTCGGACGAGCCGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCGGGGTCGGTGGTGGAGAAGGGCGGCGGGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK111267             [                                                TGTTGGACGGGTGCGGCCTCTTGGCGTTTGCCCGCTGCTGCTGCGTGAGAGGCGGCGAGATGGAGAGCGATGCACGCGTGTCGGACGAGCCGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCGGGGTCGGTGGTGGAGAAGGGCGGCGGGGTGGTGGCGAGGCGGTTCGGGTGGGCGGAGATCGAGTCGGTCACGGGCGGATTCTCGTCCCGGGTGATCGGGCAGGGCGGGTTCAGCACCGTGTACCTCGCGTCGCTCACCTCCTCCCGCCTCGGCGCCGTCAAGGTGCAGCGCAGCAGCGAGCGCCTCCACCGCGCCTTCTGCCAGGAGCGCGACGTGCTCCTCTCCCTCCGCCACCCCCACGTCGTCCGCCTCCTCGGCTACTGCGACGAACGAGATGAGGGTGTATTGGTGTTCGAGTACGCACCGAACGGCGACCTCCACGAGAGGCTCCACCACCGGAGCGGCGGGAAGAGCCGGACGGTGCTGCCGTGGGCGCGGCGCATGGCCGTCGCGTTCCAGGTGGCGATGGCGCTGGAGTACCTCCACGAGAGCCGGGACCCCGCCGTCATCCACGGCGACATCAAGTCCTCGAACGTGCTGCTCGACGCCAACCACGACGCCAAGCTCTGCGACTTCGGCTTCGCGCACGTCGGGTTCTCGGCCGCGGTCCGCCCGCCGTCCGGCGCCACCAGGGCGTGGGGCCGCCCCGTCATGGGCTCCCCGGGATACGCGGACCCGCACTTCCTCCGCTCCGGCGTGGCCACCAAGAAGAGCGACGTGTACAGCTTCGGCGTGCTGCTGCTCGAGCTCGTCACCGGGCGGGAGGCCATCTGCGCCCAGACGGGGCACCGGCTCACCGCCGCCGTGGGGCCCTCGATCGGCGAGGGCAAGCTGGCCGACGTGGTGGACCGGAGGTTGGGAGGTGACTACGACGTCGAGGAGGCCGCCACCGTGGCGGCGCTGGCGCTGCGGTGCGTCAGCGACGGCACCGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAAATAGCATGTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCATGGATGCGGTTATTGTAGGCATGTAGTGGCCCATTAACAAGGGATCTTGTACATGTTGTTGAAAAGATATACATGATT                               ]
[+] EMBL AY224423             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCGTTCCAGGTGGCGATGGCGCTGGAGTACCTCCACGAGAGCCGGGACCCCGCCGTCATCCACGGCGACATCAAGTCCTCGAACGTGCTGCTCGACGCCAACCACGACGCCAAGCTCTGCGACTTCGGCTTCGCGCACGTCGGGTTCTCGGCCGCGGTCCGCCCGCCGTCCGGCGCCACCAGGGCGTGGGGCCGCCCCGTCATGGGCTCCCCGGGATACGCGGACCCGCACTTCCTCCGCTCCGGCGTGGCCACCAAGAAGAGCGACGTGTACAGCTTCGGCGTGCTGCTGCTCGAGCTCGTCACCGGGCGGGAGGCCATCTGCGCCCAGACGGGGCACCGGCTCACCGCCGCCGTGGGGCCCTCGATCGGCGAGGGCAAGCTGGCCGACGTGGTGGACCGGAGGTTGGGAGGTGACTACGACGTCGAGGAGGCCGCCACCGTGGCGGCGCTGGCGCTGCGGTGCGTCAGCGACGGCACCGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGAT                                                                                                                                                                                                                                                             ]
[+] EMBL AU067970             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCATGGATGCGGTTATTGTAGGCATGTAGTGGCCCATTAACAAGGGATCTTGTACATGTTGTTGAAAAGATATACATGATTTACCTAATCTAAAAAAAAAAAAAAAAAAAAA]


>consensus_9374#1 TACTCGTGACATCGTGTGTNTGCGTGTGCGCGACGCGCGCGGNCAAGATGTTGGACGGGT GCGGCCTCTTGGCGTTTGCCCGCTGCTGCTGCGTGGGAGGCGGCGAGATGGAGAGCGATG CACGCGTGTCGGACGAGCCGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCGGGGTCGGTGG TGGAGAAGGGCGGCGGGGTGGTGGCGAGGCGGTTCGGGTGGGCGGAGATCGAGTCGGTCA CGGGCGGATTCTCGTCCCGGGTGATCGGGCAGGGCGGGTTCAGCACCGTGTACCTCGCGT CGCTCACCTCCTCCCGCCTCGGCGCCGTCAAGGTGCAGCGCAGCAGCGAGCGCCTCCACC GCGCCTTCTGCCAGGAGCGCGACGTGCTCCTCTCCCTCCGCCACCCCCACGTCGTCCGCC TCCTCGGCTACTGCGACGAACGAGATGAGGGTGTATTGGTGTTCGAGTACGCACCGAACG GCGACCTCCACGAGAGGCTCCACCACCGGAGCGGCGGGAAGAGCCGGACGGTGCTGCCGT GGGCGCGGCGCATGGCCGTCGCGTTCCAGGTGGCGATGGCGCTGGAGTACCTCCACGAGA GCCGGGACCCCGCCGTCATCCACGGCGACATCAAGTCCTCGAACGTGCTGCTCGACGCCA ACCACGACGCCAAGCTCTGCGACTTCGGCTTCGCGCACGTCGGGTTCTCGGCCGCGGTCC GCCCGCCGTCCGGCGCCACCAGGGCGTGGGGCCGCCCCGTCATGGGCTCCCCGGGATACG CGGACCCGCACTTCCTCCGCTCCGGCGTGGCCACCAAGAAGAGCGACGTGTACAGCTTCG GCGTGCTGCTGCTCGAGCTCGTCACCGGGCGGGAGGCCATCTGCGCCCAGACGGGGCACC GGCTCACCGCCGCCGTGGGGCCCTCGATCGGCGAGGGCAAGCTGGCCGACGTGGTGGACC GGAGGTTGGGAGGTGACTACGACGTCGAGGAGGCCGCCACCGTGGCGGCGCTGGCGCTGC GGTGCGTCAGCGACGGCACCGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGC AGGAGAAGACGACGGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTT CATGAGTTACCCGTCGAAAGGCTGTAAATAGCATGTTAGGGAGGCTCCAAAAGTTCATTT TTTTTTACCTTATCTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAA AATTTTGTGATGTCATGCATGGATGCGGTTATTGTAGGCATGTAGTGGCCCATTAACAAG GGATCTTGTACATGTTGTTGAAAAGATATACATGATTTACCTAATCTAAAAAAAAAAAAA AAAAAAAA



consensusID : consensus_9374#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence
                              [CGGCAACGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAAATAGCATGTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCAAAAAAAAAAAAA]

[+] EMBL AU031723             [CGGCAACGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAAATAGCATGTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCAAAAAAAAAAAAA]


>consensus_9374#2 CGGCAACGGGCTCCGCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGAC GGCGTTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCG TCGAAAGGCTGTAAATAGCATGTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTAT CTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGT CATGCAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9374#1      ------------------------------------------------------------
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      ACGAGGGAGAACTTATTCTCCCTCCACTCACACTCCTCGCCTCGCCTCGCCTCACTTGTA 60
                                                                                  

consensus_9374#1      ------------------------------TACTCGTGACATCGTGTGTNTGCGTGTGCG 30
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      CCCTTCGATTCTCTCCCGTTTCGTCGCCCTCCAGAGCTCGTGGATCTCTCACTTCGGGGC 120
                                                                                  

consensus_9374#1      CGACGCGCGCGGNCAAGATGTTGGACGGGTGCGGCCTCTTGGCGTTTGCCCGCTGCTGCT 90
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      GGGCGCGCGCTAGCACAATGTTCACCGGATGTGGTCTCTTCGCCTGCGTGCGCCGGTGCG 180
                                                                                  

consensus_9374#1      GCGTGGGAGGCGGCGAGATGGAGAGCGATGCACGCGTGTCGGACGAGCCGGGCTGCGGCG 150
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      ATGGCGGCGACGTCAGGAAGCGCGGGGAGGCAGGTGCAATGAGCTCGCGGGTGGCGGCCG 240
                                                                                  

consensus_9374#1      GCGGCGGCGGCGGCGGCGCGGGGTCGGTGGTGGAGAAGGGCGGCGGGGTGGTGGCGAGGC 210
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      ATCCGGCCGGCGTGGAGGAGGAAGGGAGCTGCAAGAACGTCGCCGCCGCGTCGGCGAGGC 300
                                                                                  

consensus_9374#1      GGTTCGGGTGGGCGGAGATCGAGTCGGTCACGGGCGGATTCTCGTCCCGGGTGATCGGGC 270
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      AGCTCGCGTGGGCGGACGTGGAGTCCGTCACGGGGGGGTTCTCGTCCCGGGTGATCGGGC 360
                                                                                  

consensus_9374#1      AGGGCGGGTTCAGCACCGTGTACCTCGCGTCGCTCACCTCCTCCCGCCTCGGCGCCGTCA 330
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      ACGGCGGGTTCAGCACGGTGTACCTCGCGTCGCTCTCGTCCTCCCGCCTCGGCGCCGTCA 420
                                                                                  

consensus_9374#1      AGGTGCAGCGCAGCAGCGAGCGCCTCCACCGCGCCTTCTGCCAGGAGCGCGACGTGCTCC 390
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      AGGTCCACTGCAGCAGCGAGCGCCTGCACCGCGCCTTCCGCCAGGAGCTCGAGGTGCTCC 480
                                                                                  

consensus_9374#1      TCTCCCTCCGCCACCCCCACGTCGTCCGCCTCCTCGGCTACTGCGACGAACGAGATGAGG 450
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      TCTCCCTCCGCCACCCGCACATCGTCCGCCTGCTCGGCTACTGCGACGAACGAGATGAAG 540
                                                                                  

consensus_9374#1      GTGTATTGGTGTTCGAGTACGCACCGAACGGCGACCTCCACGAGAGGCTCCACCACCGGA 510
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      GTGTGCTGGTGTTCGAGTACGCGCCGAATGGTGACCTCCACGAACGGCTCCACTGCAGCG 600
                                                                                  

consensus_9374#1      GCGGCGGGAAGAGCCGGACG---GTGCTGCCGTGGGCGCGGCGCATGGCCGTCGCGTTCC 567
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      AGGTCGCGGGCGGCGTGGCGTCGGTGCTGCCCTGGGCGCGGCGCGTGGCGATTGCGTTCC 660
                                                                                  

consensus_9374#1      AGGTGGCGATGGCGCTGGAGTACCTCCACGAGAGCCGGGACCCCGCCGTCATCCACGGCG 627
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      AGGTGGCCATGGCGCTGGAGTATCTCCACGAGAGCCGCCACCCGGCGGTCATCCACGGGG 720
                                                                                  

consensus_9374#1      ACATCAAGTCCTCGAACGTGCTGCTCGACGCCAACCACGACGCCAAGCTCTGCGACTTCG 687
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      ACATCAAGGCGTCCAACGTCCTCCTCGACGCCAACATGAACGCCAAGCTCTGCGACTTCG 780
                                                                                  

consensus_9374#1      GCTTCGCGCACGTCGGGTTCTCGGCCGCGGTCCGCCCGCCGTCCGGCGCCACCAGGGCGT 747
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      GCTTCGCCCACGTCGGCTTCTCGGCCACGGTGGGGTG---------------CAGGCCGT 825
                                                                                  

consensus_9374#1      GGGGCCGCCCCGTCATGGGCTCCCCGGGATACGCGGACCCGCACTTCCTCCGCTCCGGCG 807
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      CGGCGCGCGCCGTCATGGGCTCCCCGGGATACGTAGACCCACACCTCATCCGCTCCGGCG 885
                                                                                  

consensus_9374#1      TGGCCACCAAGAAGAGCGACGTGTACAGCTTCGGCGTGCTGCTGCTCGAGCTCGTCACCG 867
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      TGGCCACGAAGAAGAGCGACGTGTACAGCTTCGGGGTGCTGCTGCTCGAGCTCGTGACGG 945
                                                                                  

consensus_9374#1      GGCGGGAGGCCATCTGCGCCCAGACGGGGCACCGGCTCACCGCCGCCGTGGGGCCCTCGA 927
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      GGAAGGAGGCCGTCTGCCGCGACACCGGGCGGCGTCTCACTGCCGCCGTAGGTCCCATGC 1005
                                                                                  

consensus_9374#1      TCGGCGAGGGCAAGCTGGCCGACGTGGTGGACCGGAGGTTGGGAGGTGACTACGACGTCG 987
consensus_9374#2      ------------------------------------------------------------
consensus_9374#0      TCAGCGAAGGGAAGGTGGCCGACGTTGTCGACCGGAGGCTCGGAGGCGAGCACGACGGCG 1065
                                                                                  

consensus_9374#1      AGGAGGCCGCCACCGTGGCGGCGCTGGCGCTGCGGTGCGTCAGCGACGGCACCGGGCTCC 1047
consensus_9374#2      ----------------------------------------------CGGCAACGGGCTCC 14
consensus_9374#0      CAGAGGCGGCTGTCATGGCGGAGCTCGCCATGCAGTGCATCGGCGACAGCCCCGGGCTGA 1125
                                                                    * **  ******  

consensus_9374#1      GCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAG 1107
consensus_9374#2      GCCCGTCCATGGCGGAGGTGGTGCGCGAGCTGCAGGAGAAGACGACGGCGTTGATCTCAG 74
consensus_9374#0      GGCCGTCCATGGCCGACGTGGTGCGCGCGCTCCAGGAGAAGACCTCCGCGTTGGCTTCGG 1185
                      * *********** ** ********** *** ***********  * ******   ** *

consensus_9374#1      CCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAA 1167
consensus_9374#2      CCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAA 134
consensus_9374#0      CCGTTGGATCGAGATTGGACCGCAAGATGATGTTTTAACTTTTCTGGGTGTAGACTGTGA 1245
                      **** ***** * *     *   ****** * *  * * **  * *     ** **** *

consensus_9374#1      ATAGCAT-GTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCA 1226
consensus_9374#2      ATAGCAT-GTTAGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCA 193
consensus_9374#0      ATAGTACCAGTATTTTAGGGTAGGTAGGAGAAGAATGTGTGTACTGTGTAGTTTGAGAAG 1305
                      **** *    **     *       **   *    * * *    * * *  *        

consensus_9374#1      GTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCATGGATGC 1286
consensus_9374#2      GTGGATTAGTTGAAACTTTGGGATCAAGTAGAAAAATTTTGTGATGTCATGCAAAAAAAA 253
consensus_9374#0      GTAGATTAGTTTAAGCCTTTGGATCAGATAGAAAA-TTTTGTGATGTCATGGCATCTTGT 1364
                      ** ******** ** * ** ******  ******* ***************         

consensus_9374#1      GGTTATTGTAGGCATGTAGTGGCCCATTAACAAGGGATCTTGTACATGTTGTTGAAAAGA 1346
consensus_9374#2      AAAAA------------------------------------------------------- 258
consensus_9374#0      AGCACCAGTGAACGTATATTAGTAGTTCAGTAATTAAATTCTTTCCTTGTAGATCGCGTG 1424
                                                                                  

consensus_9374#1      TATACATGATTTACCTAATCTAAAAAAAAAAAAAAAAAAAAA--------- 1388
consensus_9374#2      ---------------------------------------------------
consensus_9374#0      TATTAGGTAGTAGTACTTTAGATGGTTGGTGGTGGACAAGCAATTTGGTTT 1475
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)