These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 923 fasta sequence [CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATTGTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAACAAGTCCTTCCGCTACGTTGATT] [+] EMBL AK069388 [CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATTGTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAACAAGTCCTTCCGCTACGTTGATT] [+] EMBL AU183693 [ CCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAA ] [+] EMBL BP184807 [ ACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCC ] consensusID : consensus_9380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 430 fasta sequence [CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU173265 [CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031885 [ CGTGCTNTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCNACGACGTCGNACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [CACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTAAAAAAAAAAAAA] [+] EMBL CA756263 [CACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAG 60 consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 GGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGG 120 consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 CATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACC 180 consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 CTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGG 240 consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 TGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAA 300 consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 CTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAA 360 consensus_9380#1 ------------------------------------------------------------ consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 CGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGA 420 consensus_9380#1 -CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAG 59 consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 TCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAG 480 consensus_9380#1 CCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGG 119 consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 CCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGG 540 consensus_9380#1 GGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCAC 179 consensus_9380#2 ------------------------------------------------------------ consensus_9380#0 GGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCAC 600 consensus_9380#1 GGAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTA 239 consensus_9380#2 -------------------------------------------------------CACTA 5 consensus_9380#0 GGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTA 660 ***** consensus_9380#1 CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC 299 consensus_9380#2 CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC 65 consensus_9380#0 CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC 720 ************************************************************ consensus_9380#1 AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT 359 consensus_9380#2 AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT 125 consensus_9380#0 AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT 780 ************************************************************ consensus_9380#1 AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAA 419 consensus_9380#2 AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTA-------------AAAAAAAAA 172 consensus_9380#0 AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATT 840 ************************************** ** * consensus_9380#1 AAAAAAAAAAA------------------------------------------------- 430 consensus_9380#2 AAA--------------------------------------------------------- 175 consensus_9380#0 GTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAA 900 consensus_9380#1 ----------------------- consensus_9380#2 ----------------------- consensus_9380#0 CAAGTCCTTCCGCTACGTTGATT 923 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||