cluster # 9385

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Oryza sativa
cluster # 9385 cluster # 9385 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9385#0 length = 1015 sequences # 2

consensus_9385#1 length = 320 sequences # 3
consensus_9385#2 length = 240 sequences # 1

consensusID : consensus_9385#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1015
fasta sequence

                              [CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCGCAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGTCCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTTCCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGGCAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGCAGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGCTGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCCGCCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGTTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTTGAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAGCCGAAAATTAAAAAA]

[+] EMBL AK108881             [CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCGCAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGTCCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTTCCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGGCAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGCAGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGCTGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCCGCCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGT                                                                                                                                      ]
[+] EMBL AU166953             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGTTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTTGAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAGCCGAAAATTAAAAAA]




>consensus_9385#0
CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGC
TCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGG
CGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACG
TCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCT
CGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCG
CAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGT
CCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTT
CCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGG
CAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGC
AGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGC
TGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCCGC
CCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGG
TTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTT
GGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATT
CAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGTTTGGTGACTCAGTTTGCGA
TCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTTGAGCTGCTTTTATTATTTGT
GATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAGCCGAAAATTAAAAAA

consensusID : consensus_9385#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 320
fasta sequence

                              [ATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATC-GATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGNGCGGAGGCTGGCGCGCACCG-GTCGACCGTTGTGATGGAGAGGCT-CCGGTNCGTCGCCAACTTCNCCTTCC]

[+] EMBL AU032226             [ATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATC GATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGNGCGGAGGCTGGCGCGCACCG GTCGACCGTTGTGATGGAGAGGCT CCGGTNCGTCGCCA            ]
[+] EMBL CA758460             [  CATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATC GACCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCG                                                                                    ]
[+] EMBL AU166952             [    TCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCAGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCG GCGGAGGCTGGCGCGCACCGCGTCGACCGTTGTGATGGAGAGGCTCCCGGTCCGTNGCCAACTTCNCCTTCC]




>consensus_9385#1
ATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTG
AGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGAT
GCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGC
CATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTC
GGCGGCGCGNGCGGAGGCTGGCGCGCACCGGTCGACCGTTGTGATGGAGAGGCTCCGGTN
CGTCGCCAACTTCNCCTTCC

consensusID : consensus_9385#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [GCCGGCACGGTANCCAGCCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTNCAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTNTNGTAGCTCAAAAAAAAAAAAAAA]

[+] EMBL AU184743             [GCCGGCACGGTANCCAGCCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTNCAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTNTNGTAGCTCAAAAAAAAAAAAAAA]




>consensus_9385#2
GCCGGCACGGTANCCAGCCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCCTTG
TCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCT
NCAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATT
TGTGATTCAAATATGATTCAAATGCTGGGACATGTNTNGTAGCTCAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9385#0      CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGC 60
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      TCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGG 120
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      CGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACG 180
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      TCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCT 240
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      CGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCG 300
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      CAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGT 360
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      CCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTT 420
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      CCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGG 480
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      CAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGC 540
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      AGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGC 600
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      ------------------------------------------------------------
                                                                                  

consensus_9385#0      TGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCC-G 659
consensus_9385#2      -------------------------------------------GCCGGCACGGTANCCAG 17
consensus_9385#1      ----------------------------------------------ATCATCGCCTTTCC 14
                                                                      **  *       

consensus_9385#0      CCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCC-TTGTCGCGTGGTTTCGCTT 718
consensus_9385#2      CCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCC-TTGTCGCGTGGTTTCGCTT 76
consensus_9385#1      TCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTG 74
                       ***  *       *** **  *   *     * *  **   ***   ***  **   * 

consensus_9385#0      GGTTAGATAGGGGAT--TTGT--TTGTTCATTGTGACGGATCA-ACGCTA--------CA 765
consensus_9385#2      GGTTAGATAGGGGAT--TTGT--TTGTTCATTGTGACGGATCA-ACGCTN--------CA 123
consensus_9385#1      GATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCA 134
                      * ** ***    ***  * **  * **  ** * *  **  ** * ***         **

consensus_9385#0      ACACACAACAATTTTGGATTGTTTACTTATAC-TTGTAGTACATACTACTACAA--AATT 822
consensus_9385#2      ACACACAACAATTTTGGATTGTTTACTTATAC-TTGTAGTACATACTACTACAA--AATT 180
consensus_9385#1      GCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGT 194
                       * *          *** * ** * * *  ** *  * **     * *   *       *

consensus_9385#0      TGTGATTCAAATATGATTCAAATGCTGGGACAT--GTCTCGTAGCTCAAGATCAGAAGCG 880
consensus_9385#2      TGTGATTCAAATATGATTCAAATGCTGGGACAT--GTNTNGTAGCTCAAAAAAAAAAAAA 238
consensus_9385#1      CGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGNGCGG 254
                       ***  *     * *        *    *** *       ** *                

consensus_9385#0      TTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTT 940
consensus_9385#2      AA---------------------------------------------------------- 240
consensus_9385#1      AGGCTGGCGCGCACCGGTCGACCGTTGTGATGGAGAGGCTCCGGTNCGTCGCCAACTTCN 314
                                                                                  

consensus_9385#0      GAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAG 1000
consensus_9385#2      ------------------------------------------------------------
consensus_9385#1      CCTTCC------------------------------------------------------ 320
                                                                                  

consensus_9385#0      CCGAAAATTAAAAAA 1015
consensus_9385#2      ---------------
consensus_9385#1      ---------------