cluster # 9386

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Oryza sativa
cluster # 9386 cluster # 9386 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9386#0 length = 666 sequences # 5

consensus_9386#1 length = 361 sequences # 1

consensusID : consensus_9386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 666
fasta sequence

                              [AATTCCCAGTTCATTCCTGCCTCCGTCTCCAGTAGCTTGCTTTGCTCGCAGATTGTTCCTTTTTTCTTTTTCTCCGGCGACTCGAGATCGTGGCTAGCTAGAGCCTAGATGGCCTCTTCCATGGCGGGCGCGGCGGGGGAGGAGAAGGCGGCGGCGGGGGCGGGGCGGCGGGGGATGATCGTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTCGTCGCCACCTACGCGCTCCACTAGCTCGATCAATCGGCTCAGGGAGGAGGAGGAGGAGAAGAAGAAGTCGTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGT--GAGAGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTACCCCTTTCGCCTCCAAAAAAAAAAAAAAATATTATTTTGTACTAGAGAAGTAGAAATATAGTGATATTTTCGGGAGCAAAAA]

[+] EMBL AK063719             [AATTCCCAGTTCATTCCTGCCTCCGTCTCCAGTAGCTTGCTTTGCTCGCAGATTGTTCCTTTTTTCTTTTTCTCCGGCGACTCGAGATCGTGGCTAGCTAGAGCCTAGATGGCCTCTTCCATGGCGGGCGCGGCGGGGGAGGAGAAGGCGGCGGCGGGGGCGGGGCGGCGGGGGATGATCGTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTCGTCGCCACCTACGCGCTCCACTAGCTCGATCAATCGGCTCAGGGAGGAGGAGGAGGAGAAGAAGAAGTCGTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGT  GAGAGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTA                                                                                                                         ]
[+] EMBL AU164698             [               CCTGCCTCCGTCTCCAGTAGCTTGCTTTGCTCGCAGATTGTTCCTTTTTTCTTTTTCTCCGGCGACTCGAGATCGTGGCTAGCTAGAGCCTAGATGGCCTCTTCCATGGCGGGCGCGGCGGGGGAGGAGAAGGCGGCGGCGGGGGCGGGGCGGCGGGGGATGATCGTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTCGTNGCCACCTACGCGCTCCACTAGCTCGATCAATCGGCTCAGGGAGGAng                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU162769             [                                                        TCCTTTTTTCTTTTTCTCCGGCGACTCGAGATCGTGGCTAGCTAGAGCCTAGATGGCCTCTTCCATGGCGGGCGCGGCGGGGGAGGAGAAGGCGGCGGCGGGGGCGGGGCGGCGGGGGATGATCGTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTCGTCGCCACCTACGCGCTCCACTAGCTCGATCAATCGGCTCAGGGAGGAGGAGGAGGAGAAGAAGAAGTCGTTCCCCTTCCCCTANCAACCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTAC                                                                                                                                                                                       ]
[+] EMBL AU057670             [                                                                                                                                                                                  TCGTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTCGTCGCCACCTACGCGCTCCACTAGCTCGATCAATCGGCTCAGGGAGGAGGAGGAGGAGAAGAAGAAGTCGTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTACCCCTTTCGCCTCCAAAAAAAAAAAA                                                        ]
[+] EMBL BI795968             [                                                                                                                                                                                               ccgcGCCTTCGACCGGGGGATCGCCTACGCGCTCATGGTC TCGCGCTCGTCGCCACCTACGCGCTCCACTAGCTCGATC ATCGGCTCAGGGAGGAGGAGGAGGAGGAGAAGAAGTCGTTCCCCTTCCCCTACC ACCTGCACTTCGATCGATCGATGCC AAAGTCTATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGT      GAGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTACCCCTTTCGTCTCCAAATATAGATTTAAATATTATTTTGTACTAGAGAAGTAGAAATATAGTGATATTTTCGGGAGCAAAAA]




>consensus_9386#0
AATTCCCAGTTCATTCCTGCCTCCGTCTCCAGTAGCTTGCTTTGCTCGCAGATTGTTCCT
TTTTTCTTTTTCTCCGGCGACTCGAGATCGTGGCTAGCTAGAGCCTAGATGGCCTCTTCC
ATGGCGGGCGCGGCGGGGGAGGAGAAGGCGGCGGCGGGGGCGGGGCGGCGGGGGATGATC
GTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTC
GTCGCCACCTACGCGCTCCACTAGCTCGATCAATCGGCTCAGGGAGGAGGAGGAGGAGAA
GAAGAAGTCGTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAGTCT
ATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAAT
TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATG
TACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCAT
TGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTACCCCTTTCGCCTCCAA
AAAAAAAAAAAAATATTATTTTGTACTAGAGAAGTAGAAATATAGTGATATTTTCGGGAG
CAAAAA

consensusID : consensus_9386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [AATCAGGCTCANGGGAGGAGGATGGAGGAGNAGAAGAAGTCTTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGANCCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGTGAGAGNGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU032326             [AATCAGGCTCANGGGAGGAGGATGGAGGAGNAGAAGAAGTCTTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGANCCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGTGAGAGNGAGAGAGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9386#1
AATCAGGCTCANGGGAGGAGGATGGAGGAGNAGAAGAAGTCTTTCCCCTTCCCCTACCAA
CCTGCACTTCGATCGATCGATGCCAAAAGTCTATAACTATAGANCCTGATTCTTTCTTAT
TCAATTCTTCTTTTTAGAGAAGGTTAATTAATTGTGTGTGTGTGTGTGTGAGAGNGAGAG
AGAGAGAGAGAGATCGATGGATAATTTGGATATGTACACTATACCAAGTGGGTTAATTAA
CTGGATGTACTCTTCTGCATATTTTGGTGTTCATTGGTAACAGTTTGGCATTGGAATGTC
TGGTAAATCGATGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9386#0      AATTCCCAGTTCATTCCTGCCTCCGTCTCCAGTAGCTTGCTTTGCTCGCAGATTGTTCCT 60
consensus_9386#1      ------------------------------------------------------------
                                                                                  

consensus_9386#0      TTTTTCTTTTTCTCCGGCGACTCGAGATCGTGGCTAGCTAGAGCCTAGATGGCCTCTTCC 120
consensus_9386#1      ------------------------------------------------------------
                                                                                  

consensus_9386#0      ATGGCGGGCGCGGCGGGGGAGGAGAAGGCGGCGGCGGGGGCGGGGCGGCGGGGGATGATC 180
consensus_9386#1      ------------------------------------------------------------
                                                                                  

consensus_9386#0      GTGATCGACCGGCAGGCCGTCGACCGGGGGATCGCCTACGCGCTCATGGTCGTCGCGCTC 240
consensus_9386#1      ------------------------------------------------------------
                                                                                  

consensus_9386#0      GTCGCCACCTACGCGCTCCACTAGCTCGATCAATC-GGCTCAGGG-AGGAGGA-GGAGGA 297
consensus_9386#1      -------------------------------AATCAGGCTCANGGGAGGAGGATGGAGGA 29
                                                     **** ****** ** ******* ******

consensus_9386#0      GAAGAAGAAGTCGTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAG 357
consensus_9386#1      GNAGAAGAAGTCTTTCCCCTTCCCCTACCAACCTGCACTTCGATCGATCGATGCCAAAAG 89
                      * ********** ***********************************************

consensus_9386#0      TCTATAACTATAGAACCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATT 417
consensus_9386#1      TCTATAACTATAGANCCTGATTCTTTCTTATTCAATTCTTCTTTTTAGAGAAGGTTAATT 149
                      ************** *********************************************

consensus_9386#0      AATTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGA--TCGATGGATAATTTGG 475
consensus_9386#1      AATTGTGTGTGTGTGTGTGTGAGAGNGAGAGAGAGAGAGAGAGATCGATGGATAATTTGG 209
                      ************************* ****************  ****************

consensus_9386#0      ATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTG 535
consensus_9386#1      ATATGTACACTATACCAAGTGGGTTAATTAACTGGATGTACTCTTCTGCATATTTTGGTG 269
                      ************************************************************

consensus_9386#0      TTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTACCCCTTTCGCC 595
consensus_9386#1      TTCATTGGTAACAGTTTGGCATTGGAATGTCTGGTAAATCGATGATTTAA---------- 319
                      *************************************************           

consensus_9386#0      TCCAAAAAAAAAAAAAAATATTATTTTGTACTAGAGAAGTAGAAATATAGTGATATTTTC 655
consensus_9386#1      ---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 361
                         *************** *  *      *  * * **  * ***               

consensus_9386#0      GGGAGCAAAAA 666
consensus_9386#1      -----------