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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1505 fasta sequence
[TCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGG-TGACATGAGC-TCCATGACCAAAGA-TAAGGTAGA-CAGGGCCGA-AGAGGAGAG-GAAAGCG-ATCATGTGGGAAGAGAGGAATGGGC-TTGTAAGTGATTATGCCA-AGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAG-TTCTTCCGTTGGAATCTG-TGGATGAGCAGAAGCTCCAGG-CTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGT-TCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGA-AAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGT-GCTCTGATAT-TCTGAAGCTACAT-GTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTTCTAATCCAAAAAAAA]
[+] EMBL AK074014 [TCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCGTCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGG TGACATGAGC TCCATGACCAAAGA TAAGGTAGA CAGGGCCGA AGAGGAGAG GAAAGCG ATCATGTGGGAAGAGAGGAATGGGC TTGTAAGTGATTATGCCA AGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAG TTCTTCCGTTGGAATCTG TGGATGAGCAGAAGCTCCAGG CTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGT TCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGA AAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGT GCTCTGATAT TCTGAAGCTACAT GTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATT ]
[+] EMBL AU173358 [ GGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACA ]
[+] EMBL OSC5741 [ GGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTNAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGGACTATCAACTGCCTC ]
[+] EMBL BI805804 [ TACCCAAGGCGNCAGGTTGACATGAGCGTCCATGACCAAAGAGTAAGGTAGATCA GGCCGATAGAGGAGAGTGAAAGCGTATCATGTGGGAAGAGAGGAATGGGCTTTGTAAGTGATTATGCCANAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTCCAGTTTCTTCCGTTGGAATCTGTTGGATGA CAGAAGCTCCAGGTCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTGTCATGTCCATGATAGAAGATTGTTTTTCACCGCTGCACGGTAGCCAAAATATTGAGCNTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCCCTGAGAAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGTGGCTCTGATATGTCTGAAGCTACATGGTGTAAGGCCCCAATCTGGGAAATAATCAAGGTC AAATGAAATGCAGACAGTAGTTTC ]
[+] EMBL AU173359 [ GCAG TTCTTCCGTTGGAATCTG TGGATGAGCAGAAGCTCCAGG CTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGT TCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGA AAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGT GCTCTGATAT TCTGAAGCTACAT GTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTCCTAATCCAAAAAAAA]
consensusID : consensus_9387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TCAGTTTGGCCCGTGCAATTGTTGGTAGCNAAGGTCAAGGTGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGNGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCNGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGNTGGTNACATGAGCTCCATGACCAAAGATAAGGTNGACAGGGCCGAAGAGGTGNGGAAAGCGATCATGTGGGAAGAGAGGNATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCNGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCNATATAGAAGATTGTTTTTCACCGCTGCACGGTNGCAAAAATATTGAGCTTATTGCCTATNGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTANANATGGAAATGAAAGTTGTTCCAGACTTCCANGNATACCTCTTNTTNTGGTNGNACATGTTTCTGTNNTTTTTCTCAAAAAAAAAAAAAAA]
[+] EMBL AU032456 [TCAGTTTGGCCCGTGCAATTGTTGGTAGCNAAGGTCAAGGTGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGNGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCNGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGNTGGTNACATGAGCTCCATGACCAAAGATAAGGTNGACAGGGCCGAAGAGGTGNGGAAAGCGATCATGTGGGAAGAGAGGNATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCNGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCNATATAGAAGATTGTTTTTCACCGCTGCACGGTNGCAAAAATATTGAGCTTATTGCCTATNGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTANANATGGAAATGAAAGTTGTTCCAGACTTCCANGNATACCTCTTNTTNTGGTNGNACATGTTTCTGTNNTTTTTCTCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9387#0 TCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGC 60
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 AAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATC 120
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 TCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTC 180
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 CGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCA 240
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 GGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTC 300
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 ATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATA 360
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 TGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTC 420
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 ACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCAT 480
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 CATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGA 540
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 GAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTT 600
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 GGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCG 660
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 TCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGT 720
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 GAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAA-GGTCAAGGAGGTGGATG 779
consensus_9387#1 -----------TCAGTTTGGCCCGTGCAATTGTTGGTAGCNAAGGTCAAGGTGGTGGATG 49
********* ******************* * ******** ********
consensus_9387#0 ATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCA 839
consensus_9387#1 ATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGNGCAGAAAGCCA 109
************************************************ ***********
consensus_9387#0 GCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAA 899
consensus_9387#1 GCATTGCAAGCTCTGCTATCATGAATAACCNGTATGTCTCAGCTGGTGCTTCCTGGTTAA 169
****************************** *****************************
consensus_9387#0 CAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATA 959
consensus_9387#1 CAAGCGCATTTGGCATGGTAACCAAGGCGGNTGGTNACATGAGCTCCATGACCAAAGATA 229
****************************** *** ************************
consensus_9387#0 AGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTG 1019
consensus_9387#1 AGGTNGACAGGGCCGAAGAGGTGNGGAAAGCGATCATGTGGGAAGAGAGGNATGGGCTTG 289
**** **************** * ************************** *********
consensus_9387#0 TAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTC 1079
consensus_9387#1 TAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCNGTTCTTC 349
**************************************************** *******
consensus_9387#0 CGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTG 1139
consensus_9387#1 CGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTG 409
************************************************************
consensus_9387#0 GTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCAATATAGAAGATTGTTTTTCACCG 1199
consensus_9387#1 GTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCNATATAGAAGATTGTTTTTCACCG 469
************************************ ***********************
consensus_9387#0 CTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATT 1259
consensus_9387#1 CTGCACGGTNGCAAAAATATTGAGCTTATTGCCTATNGTATGATGTAAATTTTAGAAATT 529
********* ************************** ***********************
consensus_9387#0 CCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTT 1319
consensus_9387#1 CCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTT 589
************************************************************
consensus_9387#0 AGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACAT 1379
consensus_9387#1 ANANATGGAAATGAAAGTTGTTCCAGACTTCCANGNATACCTCTTNTTNTGGTNGNACAT 649
* * ***************************** * ********* ** **** * ****
consensus_9387#0 GTTTCTGTGAGTTATCTCAGAACTATTTGTGCTCTGATATTCTGAAGCTACATGTGTAAG 1439
consensus_9387#1 GTTTCTGTNNTTTTTCTCAAAAAAAAAAAAAAA--------------------------- 682
******** ** ***** ** *
consensus_9387#0 GCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTTCTAATCCAA 1499
consensus_9387#1 ------------------------------------------------------------
consensus_9387#0 AAAAAA 1505
consensus_9387#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||