These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1505 fasta sequence [TCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGG-TGACATGAGC-TCCATGACCAAAGA-TAAGGTAGA-CAGGGCCGA-AGAGGAGAG-GAAAGCG-ATCATGTGGGAAGAGAGGAATGGGC-TTGTAAGTGATTATGCCA-AGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAG-TTCTTCCGTTGGAATCTG-TGGATGAGCAGAAGCTCCAGG-CTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGT-TCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGA-AAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGT-GCTCTGATAT-TCTGAAGCTACAT-GTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTTCTAATCCAAAAAAAA] [+] EMBL AK074014 [TCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGCAAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATCTCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTCCGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCGTCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGTGAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAAGGTCAAGGAGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGCAGG TGACATGAGC TCCATGACCAAAGA TAAGGTAGA CAGGGCCGA AGAGGAGAG GAAAGCG ATCATGTGGGAAGAGAGGAATGGGC TTGTAAGTGATTATGCCA AGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAG TTCTTCCGTTGGAATCTG TGGATGAGCAGAAGCTCCAGG CTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGT TCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGA AAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGT GCTCTGATAT TCTGAAGCTACAT GTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATT ] [+] EMBL AU173358 [ GGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGAGAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTTGGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCGTCACAACA ] [+] EMBL OSC5741 [ GGTCAGGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTCATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATATGTTGAGATGCAAAGTGAATCTNAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTCACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCATCATAACTCCAGTTGTGGACTATCAACTGCCTC ] [+] EMBL BI805804 [ TACCCAAGGCGNCAGGTTGACATGAGCGTCCATGACCAAAGAGTAAGGTAGATCA GGCCGATAGAGGAGAGTGAAAGCGTATCATGTGGGAAGAGAGGAATGGGCTTTGTAAGTGATTATGCCANAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTCCAGTTTCTTCCGTTGGAATCTGTTGGATGA CAGAAGCTCCAGGTCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTGTCATGTCCATGATAGAAGATTGTTTTTCACCGCTGCACGGTAGCCAAAATATTGAGCNTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCCCTGAGAAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGTGGCTCTGATATGTCTGAAGCTACATGGTGTAAGGCCCCAATCTGGGAAATAATCAAGGTC AAATGAAATGCAGACAGTAGTTTC ] [+] EMBL AU173359 [ GCAG TTCTTCCGTTGGAATCTG TGGATGAGCAGAAGCTCCAGG CTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGT TCATGTCCAATATAGAAGATTGTTTTTCACCGCTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGA AAGGCTTACTTGTTCAGTGTTAGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACATGTTTCTGTGAGTTATCTCAGAACTATTTGT GCTCTGATAT TCTGAAGCTACAT GTGTAAGGCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTCCTAATCCAAAAAAAA] consensusID : consensus_9387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [TCAGTTTGGCCCGTGCAATTGTTGGTAGCNAAGGTCAAGGTGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGNGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCNGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGNTGGTNACATGAGCTCCATGACCAAAGATAAGGTNGACAGGGCCGAAGAGGTGNGGAAAGCGATCATGTGGGAAGAGAGGNATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCNGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCNATATAGAAGATTGTTTTTCACCGCTGCACGGTNGCAAAAATATTGAGCTTATTGCCTATNGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTANANATGGAAATGAAAGTTGTTCCAGACTTCCANGNATACCTCTTNTTNTGGTNGNACATGTTTCTGTNNTTTTTCTCAAAAAAAAAAAAAAA] [+] EMBL AU032456 [TCAGTTTGGCCCGTGCAATTGTTGGTAGCNAAGGTCAAGGTGGTGGATGATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGNGCAGAAAGCCAGCATTGCAAGCTCTGCTATCATGAATAACCNGTATGTCTCAGCTGGTGCTTCCTGGTTAACAAGCGCATTTGGCATGGTAACCAAGGCGGNTGGTNACATGAGCTCCATGACCAAAGATAAGGTNGACAGGGCCGAAGAGGTGNGGAAAGCGATCATGTGGGAAGAGAGGNATGGGCTTGTAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCNGTTCTTCCGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTGGTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCNATATAGAAGATTGTTTTTCACCGCTGCACGGTNGCAAAAATATTGAGCTTATTGCCTATNGTATGATGTAAATTTTAGAAATTCCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTTANANATGGAAATGAAAGTTGTTCCAGACTTCCANGNATACCTCTTNTTNTGGTNGNACATGTTTCTGTNNTTTTTCTCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9387#0 TCTCTCTCTCTCTCGGTCTCCCACCTCCTCATCCCGCTCGCCCGCTCGCCGACACGGCGC 60 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 AAATCCAAGAACCCCCCACGCCGTGCGTGGACACCTCGCCTCGCCTCGTCCTCGCCCATC 120 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 TCTCTCCTTTTGCCCGCATCCGCGGCCTCGCCTCGTAGTCCCCGCCGCATCTCGCCATTC 180 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 CGCTACGCGCCCAAGCTACTGCTAGTAGTACTATCTGCTCCCCCGTGCGTGGTCGGGTCA 240 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 GGTGGGTCGGCCGCGAGATCCCGCCATGGAGGTCAGGACAGTAAAAGTTAGCAACATTTC 300 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 ATTGAATGCTTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGAGATATAGAATA 360 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 TGTTGAGATGCAAAGTGAATCTGAAAGGTCACAGCTTGCTTATGTTACATTTAAGGACTC 420 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 ACAAGGAGCAGATACTGCTGTGCTTCTCTCAGGGGCAACAATTGTTGACCGTTCTGTCAT 480 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 CATAACTCCAGTTGTGAACTATCAACTGCCTCCTGATGCACGCAAACAATCCGCAGGAGA 540 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 GAAATCTTCCTCTGCTGAATCTGTAGTCAGGAAGGCAGAGGATGTTGTGAGCAGCATGTT 600 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 GGCAAAGGGCTTTGTCCTCAGCAAGGATGCTCTGAACGTAGCAAGATCTTTTGACGAGCG 660 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 TCACAACATACTGTCCAATGCTACAGCTACTGTCGCATCTCTAGACCGCCAGTATGGCGT 720 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 GAGTGAAAAGATCAGTTTGGGCCGTGCAATTGTTGGTAGCAA-GGTCAAGGAGGTGGATG 779 consensus_9387#1 -----------TCAGTTTGGCCCGTGCAATTGTTGGTAGCNAAGGTCAAGGTGGTGGATG 49 ********* ******************* * ******** ******** consensus_9387#0 ATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGAGCAGAAAGCCA 839 consensus_9387#1 ATCGTTATCAGGTGTCAGAACTCACAAAGTCCGCTTTAGCGGCTGCGGNGCAGAAAGCCA 109 ************************************************ *********** consensus_9387#0 GCATTGCAAGCTCTGCTATCATGAATAACCAGTATGTCTCAGCTGGTGCTTCCTGGTTAA 899 consensus_9387#1 GCATTGCAAGCTCTGCTATCATGAATAACCNGTATGTCTCAGCTGGTGCTTCCTGGTTAA 169 ****************************** ***************************** consensus_9387#0 CAAGCGCATTTGGCATGGTAACCAAGGCGGCAGGTGACATGAGCTCCATGACCAAAGATA 959 consensus_9387#1 CAAGCGCATTTGGCATGGTAACCAAGGCGGNTGGTNACATGAGCTCCATGACCAAAGATA 229 ****************************** *** ************************ consensus_9387#0 AGGTAGACAGGGCCGAAGAGGAGAGGAAAGCGATCATGTGGGAAGAGAGGAATGGGCTTG 1019 consensus_9387#1 AGGTNGACAGGGCCGAAGAGGTGNGGAAAGCGATCATGTGGGAAGAGAGGNATGGGCTTG 289 **** **************** * ************************** ********* consensus_9387#0 TAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCAGTTCTTC 1079 consensus_9387#1 TAAGTGATTATGCCAAGATCCATCTTGATGAACCCTCTTCATGGGAGCCTGCNGTTCTTC 349 **************************************************** ******* consensus_9387#0 CGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTG 1139 consensus_9387#1 CGTTGGAATCTGTGGATGAGCAGAAGCTCCAGGCTGTGTGATCTGCACAATCCAATGGTG 409 ************************************************************ consensus_9387#0 GTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCAATATAGAAGATTGTTTTTCACCG 1199 consensus_9387#1 GTCGTTTCTCTGCACGTCATTCTTTTGTTCATGTCCNATATAGAAGATTGTTTTTCACCG 469 ************************************ *********************** consensus_9387#0 CTGCACGGTAGCAAAAATATTGAGCTTATTGCCTATAGTATGATGTAAATTTTAGAAATT 1259 consensus_9387#1 CTGCACGGTNGCAAAAATATTGAGCTTATTGCCTATNGTATGATGTAAATTTTAGAAATT 529 ********* ************************** *********************** consensus_9387#0 CCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTT 1319 consensus_9387#1 CCCCATGTGTTTTCTTCCAGCTTTGTTATAGACCACTGAAAGGCTTACTTGTTCAGTGTT 589 ************************************************************ consensus_9387#0 AGACATGGAAATGAAAGTTGTTCCAGACTTCCAGGCATACCTCTTGTTATGGTAGAACAT 1379 consensus_9387#1 ANANATGGAAATGAAAGTTGTTCCAGACTTCCANGNATACCTCTTNTTNTGGTNGNACAT 649 * * ***************************** * ********* ** **** * **** consensus_9387#0 GTTTCTGTGAGTTATCTCAGAACTATTTGTGCTCTGATATTCTGAAGCTACATGTGTAAG 1439 consensus_9387#1 GTTTCTGTNNTTTTTCTCAAAAAAAAAAAAAAA--------------------------- 682 ******** ** ***** ** * consensus_9387#0 GCCCAAATCTGGGAAATAATCAAGGTCAAAATGAAATGCAGACAATATTTTCTAATCCAA 1499 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 AAAAAA 1505 consensus_9387#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||