cluster # 939

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Oryza sativa
cluster # 939 cluster # 939 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_939#0 length = 400 sequences # 1

consensus_939#1 length = 377 sequences # 1

consensusID : consensus_939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [CNANAGNCNCNTNTNCGNGCAGNNAAGNACTTNNNGCNCCNNNGNANNAGNCGNTCATTNTCGGNGGNNNCACNTTCCNTCAAGTCCGGNTCGCNNGTGGCAAGNTACGGCGTCATCCTGTTTGGCAAGCTCCGCATNCCGNCAATGCCGGCAGACGGGCCGGCGTACGTCNCACTTCCCNGCGTTTTCAACGGGGCCCGACGACCCGGCCAAGTTTCACAGCTTCCTCACCGAGATGAAGGAGGAGCAGGGCGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTCGAGTGGTTCGACAACTGAAAATGGAAAGGGAAGAAGGGGGAGGAGCGTGATAAGCTTTGTGATACCATACTTAATACAATACCTATACTGAGTAAAAAAAAA]

[+] EMBL AT003573             [CNANAGNCNCNTNTNCGNGCAGNNAAGNACTTNNNGCNCCNNNGNANNAGNCGNTCATTNTCGGNGGNNNCACNTTCCNTCAAGTCCGGNTCGCNNGTGGCAAGNTACGGCGTCATCCTGTTTGGCAAGCTCCGCATNCCGNCAATGCCGGCAGACGGGCCGGCGTACGTCNCACTTCCCNGCGTTTTCAACGGGGCCCGACGACCCGGCCAAGTTTCACAGCTTCCTCACCGAGATGAAGGAGGAGCAGGGCGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTCGAGTGGTTCGACAACTGAAAATGGAAAGGGAAGAAGGGGGAGGAGCGTGATAAGCTTTGTGATACCATACTTAATACAATACCTATACTGAGTAAAAAAAAA]




>consensus_939#0
CNANAGNCNCNTNTNCGNGCAGNNAAGNACTTNNNGCNCCNNNGNANNAGNCGNTCATTN
TCGGNGGNNNCACNTTCCNTCAAGTCCGGNTCGCNNGTGGCAAGNTACGGCGTCATCCTG
TTTGGCAAGCTCCGCATNCCGNCAATGCCGGCAGACGGGCCGGCGTACGTCNCACTTCCC
NGCGTTTTCAACGGGGCCCGACGACCCGGCCAAGTTTCACAGCTTCCTCACCGAGATGAA
GGAGGAGCAGGGCGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTCGA
GTGGTTCGACAACTGAAAATGGAAAGGGAAGAAGGGGGAGGAGCGTGATAAGCTTTGTGA
TACCATACTTAATACAATACCTATACTGAGTAAAAAAAAA

consensusID : consensus_939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [TTCGGCAGTNNNNGGCCTCAAGGACAAGGAGCTCNCGTCCATTNACGGTCGCGNCTCTTCCTGNAAGTNCGGGTCACNGTNNCAAGCNTNCGGGATCATCCTGTTTGGCAAGTTCCGCATNNCCACAATGCCNGCNGCCGGNCCNGCGTACGTCCNCTTTCGGGCGTTTTCACAGGGGCCGACTGNTCCGGCCAAGTTTCGCAGCTTCCTCACCGANATGAAGGAGNAGCAGGTNGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTNGAGTGGTTTNACNGCTGCAAATGGAAAGGGAAGNAGGGGGAGGAGCGCCGATAAGCTTTGTGANACNATNCTTGATACAATACCTNTGGTGAGTAAA]

[+] EMBL AT003548             [TTCGGCAGTNNNNGGCCTCAAGGACAAGGAGCTCNCGTCCATTNACGGTCGCGNCTCTTCCTGNAAGTNCGGGTCACNGTNNCAAGCNTNCGGGATCATCCTGTTTGGCAAGTTCCGCATNNCCACAATGCCNGCNGCCGGNCCNGCGTACGTCCNCTTTCGGGCGTTTTCACAGGGGCCGACTGNTCCGGCCAAGTTTCGCAGCTTCCTCACCGANATGAAGGAGNAGCAGGTNGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTNGAGTGGTTTNACNGCTGCAAATGGAAAGGGAAGNAGGGGGAGGAGCGCCGATAAGCTTTGTGANACNATNCTTGATACAATACCTNTGGTGAGTAAA]




>consensus_939#1
TTCGGCAGTNNNNGGCCTCAAGGACAAGGAGCTCNCGTCCATTNACGGTCGCGNCTCTTC
CTGNAAGTNCGGGTCACNGTNNCAAGCNTNCGGGATCATCCTGTTTGGCAAGTTCCGCAT
NNCCACAATGCCNGCNGCCGGNCCNGCGTACGTCCNCTTTCGGGCGTTTTCACAGGGGCC
GACTGNTCCGGCCAAGTTTCGCAGCTTCCTCACCGANATGAAGGAGNAGCAGGTNGGTGG
CAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTNGAGTGGTTTNACNGCTGCAA
ATGGAAAGGGAAGNAGGGGGAGGAGCGCCGATAAGCTTTGTGANACNATNCTTGATACAA
TACCTNTGGTGAGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_939#0      CNANAGNCNCNTNTNCGNGCAGNNAAGNACTTNNNGCNCCNNNGNANNAGNCGNTCATTN 60
consensus_939#1      --------------TTCGGCAGTNNNNGGCCTCAAGGA--CAAGGAGCTCNCGTCCATTN 44
                                       **** *     * *   *       * *    ***  *****

consensus_939#0      TCGGNGGNNNCACNTTCCNTCAAGTCCGGNTCGCNNGTGGCAAGNTACGGCGTCATCCTG 120
consensus_939#1      ACGGTCGCGNC-TCTTCCTGNAAGTNCGGGTCACNGTNNCAAGCNTNCGGGATCATCCTG 103
                      ***  *  **   ****   **** *** ** **      *  ** ***  ********

consensus_939#0      TTTGGCAAGCTCCGCATNCCGNCAATGCCGGCAGACGGGCCGGCGTACGTCNCACTTCCC 180
consensus_939#1      TTTGGCAAGTTCCGCATNNCCACAATGCCNGCNGCCGGNCCNGCGTACGTCCN-CTTTCG 162
                     ********* ******** *  ******* ** * *** ** *********   *** * 

consensus_939#0      NGCGTTTTCAACGGGGCCCGACGACCCGGCCAAGTTTCACAGCTTCCTCACCGAGATGAA 240
consensus_939#1      GGCGTTTTCACAGGGGCCGACTGNTCCGGCCAAGTTTCGCAGCTTCCTCACCGANATGAA 222
                      *********  ******    *  ************* *************** *****

consensus_939#0      GGAGGAGCAGGGCGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTCGA 300
consensus_939#1      GGAGNAGCAGGTNGGTGGCAAGACGTTCAGGGCCATCTTTACCGACAAGGATGAGCTNGA 282
                     **** ******  ******************************************** **

consensus_939#0      GTGGTTCGACAACTGAAAATGGAAAGGGAAGAAGGGGGAGGAGCGT-GATAAGCTTTGTG 359
consensus_939#1      GTGGTTTNACNGCTGCAAATGGAAAGGGAAGNAGGGGGAGGAGCGCCGATAAGCTTTGTG 342
                     ******  **  *** *************** *************  *************

consensus_939#0      ATACCATACTTAATACAATACCTATACTGAGTAAAAAAAAA 400
consensus_939#1      ANACNATNCTTGATACAATACCTNTGGTGAGTAAA------ 377
                     * ** ** *** *********** *  ********