These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 697 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTG-AACAAT-GCCTAAGTTTGG-AAAGTACACACAGAACAATGCCATTACTCTGGCTTG-CAAGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGCCGGTCAGGTCGGCCGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCCATGTCGCGCCGCACGATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCCGCGCCGGCGGCGCGCGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG] [-] EMBL AU070443 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTG AACAAT GCCTAAGTTTGG AAAGTACACACAGAACAATGCCATTACTCTGGCTTG CAAGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGNATTCGGTGGAATCAATCAATCACACGGNGGTGG ] [-] EMBL AU032876 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCANACACATGCGNCTTTCTTCCTG AACAAT GCCTAAGTTTGG AAAGTACACACAGAACAATGCCATTACNCTGGCTTG CAAGCAACACCCGCCANACGCGCGTCG GAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGANCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGNGTCGACCAGCGATGGCAGCTGT ] [+] EMBL CB655399 [ cTTTTTATTTTGGAGCAAAAGGATTTTGATCTTATTTACACCTGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTG AACAAT GCCTAAGTTTGG AAAGTACACACAGAACAATGCCATTACTCTGGCTTG CAAGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGCCGGTCAGGTCGGCCGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCCATGTCGCGCCGCACGATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCCGCGCCGGCGGCGCGCGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG] [-] EMBL OSS15682A [ taAGAAAAATTTAAGAAAAATCCGNCTTCCTCCTTGAAAAAATCCCCTAANTTTGGAAAATTANACACAGAACAATGCAATTANTCTGGCTTGNAAAGAAACACCCGCAAAACGCCCGTCGCGAGCCCTGTCAACTTTAAACATCCGAANACAAAGTGCACTACACATGGGAGCTCGCC GCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAANTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGC ] [-] EMBL OSS15670A [ CAAACGCGCGTCGCGACCCCTGTCAACTTTANACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGTTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGC ] consensusID : consensus_9394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCAAGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATTCTACACATGGGAGCTCGCCGGCGCCGCCGCGCCATGGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGGTGGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCGGCGGCGGAAGGACATGAGGCCGTCGGACACGAATGCTCCCGGGGGGCAGTCCGTCGAC] [-] EMBL BI808947 [TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCAAGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATTCTACACATGGGAGCTCGCCGGCGCCGCCGCGCCATGGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGGTGGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCGGCGGCGGAAGGACATGAGGCCGTCGGACACGAATGCTCCCGGGGGGCAGTCCGTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9394#0 TTTTTTTTTT----------TTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATT 50 consensus_9394#1 TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATT 60 ********** * * * * ** ******************** consensus_9394#0 TTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCC 110 consensus_9394#1 TTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCC 120 ************************************************************ consensus_9394#0 TGAACAA-TGCCTAAGTT-TGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCA 168 consensus_9394#1 TGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCA 180 ******* ********** ***************************************** consensus_9394#0 AGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAG 228 consensus_9394#1 AGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATT-------------------- 220 *********** ************************** * consensus_9394#0 TGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGG-CGACCTCGCCGGCGTCG 287 consensus_9394#1 ----CTACACATGGGAGCTCGCCGGCGCCGCCGC-GCCATGGGCGACCTCGCCGGCGTCG 275 ****************************** ******* ***************** consensus_9394#0 ACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTA 347 consensus_9394#1 ACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGC-TCAACTGTCTAATGGTGTA 334 **************************************** ******************* consensus_9394#0 CTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATT 407 consensus_9394#1 CTAGGTATTCGGTGGAATCAATCAATCACACGG--------GTG--GGTGGTTTAGAATT 384 ********************************* *** ************** consensus_9394#0 CGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGA 467 consensus_9394#1 CGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGC-GGCGGCGGAAGGACATGA 443 ***************************************** ****************** consensus_9394#0 GGCCGTCGGACACGA-TGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTG 526 consensus_9394#1 GGCCGTCGGACACGAATGCTCCCGG-GGGGCAGT--CCGTCGAC---------------- 484 *************** ********* * * ** ****** * consensus_9394#0 CCGGTCAGGTCGGCCGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCC 586 consensus_9394#1 ------------------------------------------------------------ consensus_9394#0 ATGTCGCGCCGCACGATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCC 646 consensus_9394#1 ------------------------------------------------------------ consensus_9394#0 GCGCCGGCGGCGCGCGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG 697 consensus_9394#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||