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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 899 fasta sequence
[TTTTTTTGGNAANAATAAATAATTTATATAATCACNTGCTAAGTAACGCTACATTCTTTACCTTGAGGTTATGAATTGAAGCTTCCGGTTTGAATTTTGTCTAATTTCGAGCGGATCTCGCATGGCAACGAGGGATTTCTC-AAAAAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTATAAACTAAAATCACTACTAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGTACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTCGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGTGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGAGGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGTACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGAGTTCGGGTCCGCCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCTTGTACACCTGCGTGACGAGCAGCAGCCAGCAAGTCAGCAGCAAACGGAGCAAAAGCAATGGCGCGAAGGTGTTCGTCACGACGACGGTTCAGGTTGCTTACGCTCTTGAGGACCTTCTCGACCCTCGCCGGCTGCTTGGCCTGCCAGAAGAGGAACCCGAGCACGACGCGCTGGAACGCCTCCTTGAGCGGCCTCACGACGAGCCTGGTCACCGCGCT]
[-] EMBL AU055695 [TTTTTTTGGNAANAATAAATAATTTATATAATCACNTGCTAAGTAACGCTACATTCTTTACCTTGAGGTTATGAATTGAAGCTTCCGGTTTGAATTTTGTCTAATTTCGAGCGGATCTCGCATGGCAACGAGGGATTTCTC AAAAAAAAAAAAAGTNCGTCAGCNAGGTAACAAACACCCCAACACTATACATAGATCACTATAAA ]
[-] EMBL AU055924 [ TTTTTGGTAATAATAAATAATTTATATAATCACTTGCTAAGTAACGCTACATTCTTTACCTTGAGGTTATGAATTGAAGCTTCCGGTTTGAATTTTGTCTAATTTCGAGCGGATCTCGCATGGCAACGAGGGATTTCTC AAAAAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTATAAACTAAAATCACTACTAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGTACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTCGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGTGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGAGGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGTACCGGCTCTGGTTCGC ]
[+] EMBL CB618594 [ CTTCCGGTTTGAATTTTGTCTAATTTCGAGCGGATCTCGCATGGCAACGAGGGGTTTCTCAAAAAAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTATAAACTAAAATCACTACTAGTAAATTATTTATCGTTTTTAACTAGCTTATAGGAGTACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTCGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGTGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGAGGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGTACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGAGTTCGGGTCCGCCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCTTGTACACCTGCGTGACGAGCAGCAGCCAGCAAGTCAGCAGCAAACGGAGCAAAAGCAATGGCGCGAAGGTGTTCGTCACGACGACGGTTCAGGTTGCTTACGCTCTTGAGGACCTTCTCGACCCTCGCCGGCTGCTTGGCCTGCCAG ]
[-] EMBL CB618593 [ GCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTCGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGTGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCTTTCGCCGGCCCGACCCACGGGTCGAGGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGTACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGAGTTCGGGTCCGCCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCTTGTACACCTGCGTGACGAGCAGCAGCCAGCAAGTCAGCAGCAAACGGAGCAAAAGCAATGGCGCGAAGGTGTTCGTCACGACGACGGTTCAGGTTGCTTACGCTCTTGAGGACCTTCTCGACCCTCGCCGGCTGCTTGGCCTGCCAGAAGAGGAACCCGAGCACGACGCGCTGGAACGCCTCCTTGAGCGGCCTCACGACGAGCCTGGTCACCGCGCT]
consensusID : consensus_9402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[TTTACCTTGAGTTATGAATTGAAGCTTCCGGTTTGAATTTTGNCTAATTTCGAGCGNATCTCGCATGGCAACGAGGGATTTCTCAAANAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTATAAACTAAAATCACTACTAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGTACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTCGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGTGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGAGGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGTACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGCGTTCGGGTCCCCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCTTGTACACGCTCTTGAGGACCTTCTCGACCCTCGCCGGCTGCTTGGCCTGCCAGAAGAGGAACCCGAGCACGACGCGCTG]
[-] EMBL AU055923 [TTTACCTTGAGTTATGAATTGAAGCTTCCGGTTTGAATTTTGNCTAATTTCGAGCGNATCTCGCATGGCAACGAGGGATTTCTCAAANAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTATAAACTAAAATCACTACTAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGTACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTCGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGTGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGAGGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGTACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGCGTTCGGGTCCCCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCTTGTACACGCTCTTGAGGACCTTCTCGACCCTCGCCGGCTGCTTGGCCTGCCAGAAGAGGAACCCGAGCACGACGCGCTG]
consensusID : consensus_9402#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[AACCTAACCAGTTATCNTTCCNANATNTTATNNGAGANCTGTCCTNAANANGANAGGATCCANACCGGNAAATTCATATNTGACCTTCAGGAGGCNAACCTTGAGGNNANGAATNGAAGNTTCCGNTTGGAATTTTGTCAAANTTNGAGCGGATCTCGCATGGCAACGAGGGATTTCTCNNAANAAAAAAAGTTCGTCAGNTAGGTAACAAACACCCCNACATTANACANAGATCAGTATAAACTAAAATCACTAATAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGNACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTNTGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGNGGNGTCTTGGNAGA]
[-] EMBL BE228821 [AACCTAACCAGTTATCNTTCCNANATNTTATNNGAGANCTGTCCTNAANANGANAGGATCCANACCGGNAAATTCATATNTGACCTTCAGGAGGCNAACCTTGAGGNNANGAATNGAAGNTTCCGNTTGGAATTTTGTCAAANTTNGAGCGGATCTCGCATGGCAACGAGGGATTTCTCNNAANAAAAAAAGTTCGTCAGNTAGGTAACAAACACCCCNACATTANACANAGATCAGTATAAACTAAAATCACTAATAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGNACACTTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGGCTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCCGTTGAACTGCTCCGGCGCCTNTGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGGNGGNGTCTTGGNAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9402#0 --------------------------------------TTTTTTTGGNAANAATAAATAA 22
consensus_9402#1 ------------------------------------------------------------
consensus_9402#2 AACCTAACCAGTTATCNTTCCNANATNTTATNNGAGANCTGTCCTNAANANGANAGGATC 60
consensus_9402#0 TTTATATAATCACNTGCTAAGTAACGCTACATTCTTTACCTTGAGGTTATGAATTGAAGC 82
consensus_9402#1 ----------------------------------TTTACCTTGAG-TTATGAATTGAAGC 25
consensus_9402#2 CANACCGGNAAATTCATATNTGACCTTCAGGAGGCNAACCTTGAGGNNANGAATNGAAGN 120
******** * **** ****
consensus_9402#0 TTCCGGTTTGAATTTTGTCTAATTTCGAGCGGATCTCGCATGGCAACGAGGGATTTCTCA 142
consensus_9402#1 TTCCGGTTTGAATTTTGNCTAATTTCGAGCGNATCTCGCATGGCAACGAGGGATTTCTCA 85
consensus_9402#2 TTCCGNTTGGAATTTTGTCAAANTTNGAGCGGATCTCGCATGGCAACGAGGGATTTCTCN 180
***** ** ******** * ** ** ***** ***************************
consensus_9402#0 AAAAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTA 202
consensus_9402#1 AANAAAAAAAAAGTTCGTCAGCTAGGTAACAAACACCCCAACACTATACATAGATCACTA 145
consensus_9402#2 NAANAAAAAAA-GTTCGTCAGNTAGGTAACAAACACCCCNACATTANACANAGATCAGTA 239
* ******* ********* ***************** *** ** *** ****** **
consensus_9402#0 TAAACTAAAATCACTACTAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGTACAC 262
consensus_9402#1 TAAACTAAAATCACTACTAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGTACAC 205
consensus_9402#2 TAAACTAAAATCACTAATAGTAAATTATTTATCATTTTTAACTAGCTTATAGGAGNACAC 299
**************** ************************************** ****
consensus_9402#0 TTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGG 322
consensus_9402#1 TTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGG 265
consensus_9402#2 TTGAACATCGCATTGTTTCTCTTCCAGGTTTATTGTTGATCACACGGATTGGAGAGCGGG 359
************************************************************
consensus_9402#0 CTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCC 382
consensus_9402#1 CTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCC 325
consensus_9402#2 CTCCGGCTGATCCGCCGGCTTGCCGGCGTCGAGGGAGGCGAGCCACTCGAGCAGCGCCCC 419
************************************************************
consensus_9402#0 GTTGAACTGCTCCGGCGCCTC-GTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGG 441
consensus_9402#1 GTTGAACTGCTCCGGCGCCTC-GTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGG 384
consensus_9402#2 GTTGAACTGCTCCGGCGCCTNTGTCGTGGGGGCAATGGCCGGCCTGGAGGTTGACGACGG 479
******************** **************************************
consensus_9402#0 TGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGA 501
consensus_9402#1 TGGTGTCCTGGTAGAACTTCTTGATCTGCGCCGCCTTCGCCGGCCCGACCCACGGGTCGA 444
consensus_9402#2 NGGNGTCTTGGNAGA--------------------------------------------- 494
** *** *** ***
consensus_9402#0 GGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGT 561
consensus_9402#1 GGTCCCCCCACAGCAGCAGCAGCGGGCACGACAGCTTGCCCAGCAGCCTGTCCAGCGTGT 504
consensus_9402#2 ------------------------------------------------------------
consensus_9402#0 ACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGAGTTCG 621
consensus_9402#1 ACCGGCTCTGGTTCGCCATGAACCGCGACATCAGCCTGTAGTACACCTCGCCGGCGTTCG 564
consensus_9402#2 ------------------------------------------------------------
consensus_9402#0 GGTCCGCCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCT 681
consensus_9402#1 GGTCC-CCGTCGGCGCCGTGATGGACCCGATCAGGTATTCGTCGACGTTGGTCGCATCCT 623
consensus_9402#2 ------------------------------------------------------------
consensus_9402#0 TGTACACCTGCGTGACGAGCAGCAGCCAGCAAGTCAGCAGCAAACGGAGCAAAAGCAATG 741
consensus_9402#1 TGTACAC----------------------------------------------------- 630
consensus_9402#2 ------------------------------------------------------------
consensus_9402#0 GCGCGAAGGTGTTCGTCACGACGACGGTTCAGGTTGCTTACGCTCTTGAGGACCTTCTCG 801
consensus_9402#1 -----------------------------------------GCTCTTGAGGACCTTCTCG 649
consensus_9402#2 ------------------------------------------------------------
consensus_9402#0 ACCCTCGCCGGCTGCTTGGCCTGCCAGAAGAGGAACCCGAGCACGACGCGCTGGAACGCC 861
consensus_9402#1 ACCCTCGCCGGCTGCTTGGCCTGCCAGAAGAGGAACCCGAGCACGACGCGCTG------- 702
consensus_9402#2 ------------------------------------------------------------
consensus_9402#0 TCCTTGAGCGGCCTCACGACGAGCCTGGTCACCGCGCT 899
consensus_9402#1 --------------------------------------
consensus_9402#2 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||