cluster # 9403

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Oryza sativa
cluster # 9403 cluster # 9403 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9403#0 length = 840 sequences # 5

consensus_9403#1 length = 692 sequences # 1

consensusID : consensus_9403#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 840
fasta sequence

                              [AGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCTCC-AAAAAACATCATGAGAAGAAG-AGGAAGC-AAG-AGGGA-TTGG-AAGA-TTTGGC-AAGTGGTCATAACCCCAAGAAAGTACAAAAG-CGCAAAAATCAATGAAATGAGCAATGGG-TTTCGTTAGTTCTCATGCAAGATATGACAAG-TTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGATTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAAT-CGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGG-TTCGTTGTCAA-GCCGCATTACACGCCCAAATACTACAGAACCCAATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGTATCTTCTGTATCAGTATTGTTTGACACTTGGCAGCAATATAATTGAAGACTAAAGTCATGGATCAACGTACGGCAGGGAACTGCTTAATTAGCAAAAATCAAAAA]

[+] EMBL AK070760             [AGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCTCC AAAAAACATCATGAGAAGAAG AGGAAGC AAG AGGGA TTGG AAGA TTTGGC AAGTGGTCATAACCCCAAGAAAGTACAAAAG CGCAAAAATCAATGAAATGAGCAATGGG TTTCGTTAGTTCTCATGCAAGATATGACAAG TTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGATTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAAT CGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGG TTCGTTGTCAA GCCGCATTACACGCCCAAATACTACAGAACCCAATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGTATCTTCTGTATCAGTATTGTTTGACACTTGGCAGCAATATAATTGAAGACTAAAGTCATGGATCAACGTACGGCAGGGAACTGC                     ]
[+] EMBL CA765714             [AGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCTCCAAAAAAACATCATGAGAAGAAG AGGAAGC AAG AGGGA TTGG AAGA TTTGGC AAGTGGTCATAACCCCAAGAAAGTACAAAAG CGCAAAAATCAATGAAATGAGCAATGGG TTTCGTTAGTTCTCATGCAAGATATGACAAG TTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGATTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAAT CGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGNCTTGNATTTTAGATGAAAACCGGGNTTCGNTGTCAAGGCCGCATTACACGCCCAAATACTACAG                                                                                                                                                                                                                                                     ]
[+] EMBL AU055777             [AGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCTCC AAAAAACATCATGAGAAGAAG AGGAAGC AAG AGGGA TTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU055778             [                                                                                                                                        AGAAGATGTNGGAATCTAAGNAGGGATTTGGAAAGATTTTGGCAAANTGGTCATAACCCCAAGAAANTACANAAGCCGCAAANATCNATNAAATGAGCAATGGGTTTTCGTTAGTTCTCATGCAAGATATGACAAGTTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCTACTTNTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGNTTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAATCCGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGG TTCGTTGTCAA GCCGCATTACACGCCCAAATACTACAGAACCCAATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAANACAAGGAACTA TACGTTGTATCTTCTGTATCAGTATTGTTTGACACTTGGCAGCNATATAATTGAAGNCTNANGTCAaaaaa                                          ]
[+] EMBL AU222924             [                                                                                                                                                                                                                                                                                                                                                                                                                                ACAAAGATTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAAT CGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGG TTCGTTGTCAA GCCGCATTACACGCCCAAATACTACAGAACCCAATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGGAACTACTACGTTGTATCTTCTGTATCAGTATTGTTTGACACTTGGCAGCAATATAATTGAAGACTAAAGTCATGGATCAACGTACGGCAGGGAACTGCTTAATTAGCAAAAATCAAAAA]




>consensus_9403#0
AGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGAAAAAG
AAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCT
CCAAAAAACATCATGAGAAGAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTC
ATAACCCCAAGAAAGTACAAAAGCGCAAAAATCAATGAAATGAGCAATGGGTTTCGTTAG
TTCTCATGCAAGATATGACAAGTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTG
AATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTA
TGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGATTGCTGTT
ACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAATCGT
TGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTAT
TTTAGATGAAAACCGGGTTCGTTGTCAAGCCGCATTACACGCCCAAATACTACAGAACCC
AATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGG
AACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAG
GAACTACTACGTTGTATCTTCTGTATCAGTATTGTTTGACACTTGGCAGCAATATAATTG
AAGACTAAAGTCATGGATCAACGTACGGCAGGGAACTGCTTAATTAGCAAAAATCAAAAA

consensusID : consensus_9403#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [AACATCCTGAAAGAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTCATAACCCCAAGAAAGTACAAAAGCGCAAAAATCAATGAAATGAGCAATGGGTTTCGTTAGTTCTCATGCAAGATATGACAAGTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCCCAAAGATTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCGCACGGAATCGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTTTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGGTTTGTTGTCAAGCCGCATTACACGCCCAAATACTACAGAACCCCATAGATACTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGGAACTACTACGTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGGAACTACTACGTTGTATTTTCTGTATCAGTATTGTTTGACCCTTGGCAGTAATATAATTGAAGACTAAAGTCATGGGTCAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761148             [AACATCCTGAAAGAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTCATAACCCCAAGAAAGTACAAAAGCGCAAAAATCAATGAAATGAGCAATGGGTTTCGTTAGTTCTCATGCAAGATATGACAAGTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCCCAAAGATTGCTGTTACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCGCACGGAATCGTTGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTTTTCAGTATGTCATGTCTTGTATTTTAGATGAAAACCGGGTTTGTTGTCAAGCCGCATTACACGCCCAAATACTACAGAACCCCATAGATACTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGGAACTACTACGTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGGAACTACTACGTTGTATTTTCTGTATCAGTATTGTTTGACCCTTGGCAGTAATATAATTGAAGACTAAAGTCATGGGTCAAAAAAAAAAAAAAAAAAAA]




>consensus_9403#1
AACATCCTGAAAGAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTCATAACCC
CAAGAAAGTACAAAAGCGCAAAAATCAATGAAATGAGCAATGGGTTTCGTTAGTTCTCAT
GCAAGATATGACAAGTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTGAATGCTG
TCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTATGCAGCT
ACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCCCAAAGATTGCTGTTACGTTGG
ATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCGCACGGAATCGTTGAACTT
GTAATTTCAGCTTTATGCTCGCTAGCAATTTTTCAGTATGTCATGTCTTGTATTTTAGAT
GAAAACCGGGTTTGTTGTCAAGCCGCATTACACGCCCAAATACTACAGAACCCCATAGAT
ACTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGGAACTACT
ACGTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGGAACTAC
TACGTTGTATTTTCTGTATCAGTATTGTTTGACCCTTGGCAGTAATATAATTGAAGACTA
AAGTCATGGGTCAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9403#0      AGAAGCACAAACATCGCCATAAAGATCGGAGTAAAGATAAAGAAAAAGAAAAAGAAAAAG 60
consensus_9403#1      ------------------------------------------------------------
                                                                                  

consensus_9403#0      AAAAGGAAAAAGAAAAGAAGAAGGATAAGAGTGCGCATCACGATTCAGGAGCTGATCGCT 120
consensus_9403#1      ------------------------------------------------------------
                                                                                  

consensus_9403#0      CCAAAAAACATCATGAGAAGAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTC 180
consensus_9403#1      ------AACATCCTGA-AAGAAGAGGAAGCAAGAGGGATTGGAAGATTTGGCAAGTGGTC 53
                            ****** *** *******************************************

consensus_9403#0      ATAACCCCAAGAAAGTACAAAAGCGCAAAAATCAATGAAATGAGCAATGGGTTTCGTTAG 240
consensus_9403#1      ATAACCCCAAGAAAGTACAAAAGCGCAAAAATCAATGAAATGAGCAATGGGTTTCGTTAG 113
                      ************************************************************

consensus_9403#0      TTCTCATGCAAGATATGACAAGTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTG 300
consensus_9403#1      TTCTCATGCAAGATATGACAAGTTTGTTTCTGGTTAGCCTTGTAATGTGACTCCGTGTTG 173
                      ************************************************************

consensus_9403#0      AATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTA 360
consensus_9403#1      AATGCTGTCAAAGGTAGCTTTGAAGTTCTTGCTTGGCAATATCACTTCCCGAAGGTACTA 233
                      ************************************************************

consensus_9403#0      TGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCACAAAGATTGCTGTT 420
consensus_9403#1      TGCAGCTACTTGTAACGGAAATTTTATACCAAGCTGGTGAGAAGCCCAAAGATTGCTGTT 293
                      ********************************************* **************

consensus_9403#0      ACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCACACGGAATCGT 480
consensus_9403#1      ACGTTGGATTATGATGTACAGCAGTTCTGACGAAACTTAGAACTTATCGCACGGAATCGT 353
                      ************************************************ ***********

consensus_9403#0      TGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTCTTCAGTATGTCATGTCTTGTAT 540
consensus_9403#1      TGAACTTGTAATTTCAGCTTTATGCTCGCTAGCAATTTTTCAGTATGTCATGTCTTGTAT 413
                      ************************************* **********************

consensus_9403#0      TTTAGATGAAAACCGGGTTCGTTGTCAAGCCGCATTACACGCCCAAATACTACAGAACCC 600
consensus_9403#1      TTTAGATGAAAACCGGGTTTGTTGTCAAGCCGCATTACACGCCCAAATACTACAGAACCC 473
                      ******************* ****************************************

consensus_9403#0      AATAGATACTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAGG 660
consensus_9403#1      CATAGATACTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAGG 533
                       ********************* ******************************* *****

consensus_9403#0      AACTACTACGTTGGTATTTATCCACGATCCAGCAAAAACTATGTTGGTGATGAACACAAG 720
consensus_9403#1      AACTACTACGTTGGTATTTATCCCCGATCCAGCAAAAACTATGTTGGTGATGAACCCAAG 593
                      *********************** ******************************* ****

consensus_9403#0      GAACTACTACGTTGTATCTTCTGTATCAGTATTGTTTGACACTTGGCAGCAATATAATTG 780
consensus_9403#1      GAACTACTACGTTGTATTTTCTGTATCAGTATTGTTTGACCCTTGGCAGTAATATAATTG 653
                      ***************** ********************** ******** **********

consensus_9403#0      AAGACTAAAGTCATGGATCAACGTACGGCAGGGAACTGCTTAATTAGCAAAAATCAAAAA 840
consensus_9403#1      AAGACTAAAGTCATGGGTCAAAAAAAAAAAAAAAAAAAA--------------------- 692
                      **************** ****   *    *   **