These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 901 fasta sequence [TACCTCTCTTAAAACATACATTATGACATTGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAAT-TGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATAAT-TGAATTGCCTACGGCAACTTATTGGTCAGCGATCCA-TTTCAGGTCA-GTGA-TCTTC-TGGCAGATCATATGTACC-TCCTCTTTATTTCCTTTC-TGGTTTTCCAGATGGCCTATT-CATC-AT-CTC-TTCCTGGAGCAGAACCTGCAG-ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA-GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTTCTCCTAGGGAGATTCCATATCCAACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCATGATCAGCAAATACCTCATTGACTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTCATTGCTGTTCGGCATGGTATCAGCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTTA] [+] EMBL CB670539 [TACCTCTCTTAAAACATACATTATGACATTGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGACTCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAAT TGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAAAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATAAT TGAATTGCCTACGGCAACTTATTGGTCAGCGATCCA TTTCAGGTCA GTGA TCTTC TGGCAGATCATATGTACC TCCTCTTTATTTCCTTTC TGGTTTTCCAGATGGCCTATT CATC AT CTC TTCCTGGAGCAGAACCTGCAG ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCA ] [-] EMBL BI809150 [ AATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCA TTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAATGTGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATGATGTGAATTGCCTACGGCAACTTATGGGTCAGCGATCCATTTTCAGGTCAGGTGATTCTTCGTGGCAGATCATATGTACCTTCCTCTTTAATTCCTTTCGTGGTTTCCCAGATGGCCTATTCCATCAATCCTCTTTCGTGGAGCAGAA CTGGAGAATTTTTAATTCCTGG AAATTTG TTG T GAAAGGGGAGGTCTTG TACAGGGGc ] [+] EMBL CB619487 [ TGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGTACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAAT TGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGAAGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATATGGCCAGAAATAAT TGAATTGCCTACGGCAACTTATTGGTCAGCGATCCA TTTCAGGTCA GTGA TCTTC TGGCAGATCATATGTACC TCCTCTTTATTTCCTTTC TGGTTTTCCAGATGGCCTATT CATC AT CTC TTCCTGGAGCAGAACCTGCAG ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTTTAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTTCTCCTAGGGAGATTCCATATCCAACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCATGATCAGCAAATACCTCATTGACTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTCATTGCTGTTCGGCATGGTATCAGCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTTA] [-] EMBL AU056357 [ ATAAN TGAAAT TCTACGGCAACTTATTGGTCAGCGATCCA TTTCAGGTCA GTGA TCTTC TGGCAGATCATATGTACC TCCTCTTTATTTCCTTTC TGGTTTTCCAGATGGCCTATT CATC AT CTC TTCCTGGAGCAGAACCTGCAG ATTTTTTATTCCTGGTAATTTTGCTTGCTGGAAAGTGGA GTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGCCTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTC ] consensusID : consensus_9408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGACATACATTATGACATGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTCACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAATGGCTTGCAACAACCAAGCAT] [-] EMBL BI800881 [TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGACATACATTATGACATGCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAATAATTGATGATTAATTTGACATCGACTACATGAATGACCTAACAACATGAATGACCATTTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTCACAGTTAGAGCCGCTGAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCACCGCATAAGAATGGCTTGCAACAACCAAGCAT] consensusID : consensus_9408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGCAATGTATTGTTGGATTGTTGGATGTGCACTGTGCACCACAGGTGTTGAATGTGGGGCTGCTGAAGATACTTGTGAGCTGCAGGCCAGCAATGTCATAATGTATGTCGGGAAAAGGTAGATATAAATCGTCAGCATTTACCTGAAAAA] [+] EMBL BQ907004 [ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGCAATGTATTGTTGGATTGTTGGATGTGCACTGTGCACCACAGGTGTTGAATGTGGGGCTGCTGAAGATACTTGTGAGCTGCAGGCCAGCAATGTCATAATGTATGTCGGGAAAAGGTAGATATAAATCGTCAGCATTTACCTGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9408#0 ------------------------------TACCTCTCTTAAAACATACATTATGACATT 30 consensus_9408#1 TTTTTCAGGTAAATGCTGACGATTTATATCTACCTTTTCCCGA-CATACATTATGACAT- 58 consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 GCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAA 90 consensus_9408#1 GCTGGCCTGCAGCTCACAAGTATCTAGAGCCAATTAAACTTGTGAATGAATCAAATCAAA 118 consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 TAATTGATGATTAATTTGACATCG-ACTACATGAATGACCTAACAACATGAATG-ACCAT 148 consensus_9408#1 TAATTGATGATTAATTTGACATCG-ACTACATGAATGACCTAACAACATGAATG-ACCAT 176 consensus_9408#2 -------------ATTTTGCATGGTGATGTGCGGATGGGTGCAAAATTTGAATGCAGTGC 47 **** *** * * * *** * ** ****** * consensus_9408#0 TTTGAATGGCAAACTTTTCACATGTACAACAATCGGTTCCACTCATATGAAAGT---ACA 205 consensus_9408#1 TTTGAATGGCAAACTTTTCACATGTACAACTATCGGTTCCACTCATATGAAAGTC--ACA 234 consensus_9408#2 AATGTATTGTTGGATTGTTGGATGTGCA-CTGTGCACCACAGGTGT-TGAATGTGGGGCT 105 ** ** * ** * **** ** * * ** * **** ** * consensus_9408#0 GTTAGAGCCGCT---GAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCAC 262 consensus_9408#1 GTTAGAGCCGCT---GAGCCGCCGGACATGCCTTTTCTCCCTATCAGCAGCAACTGTCAC 291 consensus_9408#2 GCTGAAGATACTTGTGAGCTGCAGGCCA-GCAATGTCATAATGTATGTCGGGAAAA--GG 162 * * ** ** **** ** ** ** ** * ** * * * * * consensus_9408#0 CGCATAAGAATTGCTTGCAACAACCAAGCATAGAATCTGTATGATGGATCATGTTGCCGA 322 consensus_9408#1 CGCATAAGAATGGCTTGCAACAACCAAGCAT----------------------------- 322 consensus_9408#2 TAGATATAAATCGTCAGCATTTACCTGAAAAA---------------------------- 194 *** *** * *** *** * consensus_9408#0 AGAATACCAGCACCACGAATTCGTCAGTGGCTGGAGTTCATAACTTTCAGCAGATGTATA 382 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 TGGCCAGAAATAATTGAATTGCCTACGGCAACTTATTGGTCAGCGATCCATTTCAGGTCA 442 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 GTGATCTTCTGGCAGATCATATGTACCTCCTCTTTATTTCCTTTCTGGTTTTCCAGATGG 502 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 CCTATTCATCATCTCTTCCTGGAGCAGAACCTGCAGATTTTTTATTCCTGGTAATTTTGC 562 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 TTGCTGGAAAGTGGAGTCTTGCATACAGTGGTCTGGGTGCTCTTGATGTCCTATCAAAGC 622 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 CTCTCACGCACACAAATCCTCTCCAAAAGCAATGTTGTATTTCTTCAGTTGTCAAACCTT 682 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 TAAATATTGTCGGAATTGAAGTTCCAAAGTAAACAGTTCTCCTAGGGAGATTCCATATCC 742 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 AACTCCTTGGAACATCAATCGGGTTCCGGCTTGAGTCATGATCAGCAAATACCTCATTGA 802 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 CTTGAAAATATGTCCCATTAAGTGGAAAGCTTCCTCTCATTGCTGTTCGGCATGGTATCA 862 consensus_9408#1 ------------------------------------------------------------ consensus_9408#2 ------------------------------------------------------------ consensus_9408#0 GCAGTGTCCCTCGAACTTTTTGGGCCTGCGCTTCTCTTA 901 consensus_9408#1 --------------------------------------- consensus_9408#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||