cluster # 942

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Oryza sativa
cluster # 942 cluster # 942 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_942#0 length = 314 sequences # 1

consensus_942#1 length = 299 sequences # 1

consensusID : consensus_942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTTNTGTGTGCTAATGGNGGAATTTCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATTTGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTGGTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATATTGTTGATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATATTNTATGTTCAACTTGAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096337             [GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTTNTGTGTGCTAATGGNGGAATTTCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATTTGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTGGTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATATTGTTGATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATATTNTATGTTCAACTTGAAAAAAAAAAAAAAAAAAAA]




>consensus_942#0
GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTTNTGTGTGCTAATGGNGGAATT
TCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATTTGGGAGGGTGAGGTGATTATG
AAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTGGTTTTTATTCTTTCGTTTGTT
CGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATATTGTTGATGATTGATTTAGAT
TTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATATTNTATGTTCAACTTGAAAAAA
AAAAAAAAAAAAAA

consensusID : consensus_942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGAGAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATCAAAAGGTGGGGTTTGTGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATTTGGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTGGTTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172760             [GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGAGAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATCAAAAGGTGGGGTTTGTGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATTTGGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTGGTTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_942#1
GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGA
GAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATCAAAAGGTGGGGTTTG
TGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATTT
GGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTGG
TTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_942#0      ------------------------------------------------------------
consensus_942#1      GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGA 60
                                                                                 

consensus_942#0      ---------------------GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTT 39
consensus_942#1      GAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATC-AAAAGGTGGGGTTT 119
                                          * ********* ****** ***** **************

consensus_942#0      NTGTGTGCTAATGGNGGAATTTCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATT 99
consensus_942#1      GTGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATT 179
                      ****** ****** ************ * ********* ************** *****

consensus_942#0      TGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTG 159
consensus_942#1      TGGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTG 239
                     ********* ************************* **** ******* *** * *****

consensus_942#0      GTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATA 219
consensus_942#1      GTTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA 299
                     ****** **                 ***    *   *                   * *

consensus_942#0      TTGTTGATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATAT 279
consensus_942#1      ------------------------------------------------------------
                                                                                 

consensus_942#0      TNTATGTTCAACTTGAAAAAAAAAAAAAAAAAAAA 314
consensus_942#1      -----------------------------------