These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1563 fasta sequence [CCAAACAAAAACAATCAGAAGCAGACGAACAGCGCCACGGAATTCATCG-AAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT-CAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCCTAGTAACAGAGAGGGGCTTAGGCAAGAGGTCATTGTTGACCTGGTGGATCAATGCCGTTCATACAAGCAGAGAGTGGTAGAGCTAGTAAACACTACCTCGAATGAGGAGTTGCTCAGCCAGGGCCTTTCTTTGAATGATGATTTGCAGAGAGTTCTAGCAAAACATGATGCTATTGCTGCAGGCGTTGCAGTTAGGTTGGAGAAAACAAAATCTCTCCAAACCAAAATTGATAGTTCTCCACCCGCAAATCCTGGGACTTCAAAAGCACCAGTTCAAAGTTCTTCAGGGACTGCAAGTGCCAGCAACCAATCTACCTTAGCACTTCCTGCTCCAGCATCATCCAGTAGTCCAAAAGCTCCTGCAGCACCAGTACCGGTTATCGACCTTCTTAGTGGAGATGATTACATCAAACCTGAACCTGCAAACTCCCTTGCACTTGTTCCTGTCACAGAATATTCAGCAGCTGATCAGAATGTGCTAGCTCTTGCAGACATGTTTGAGCAAAATAATGCCAACAGAAGCAACAATAACCTTACTAACTCTTTTAATACATCGGCACCAAATTCAAATTTCCCTGCATCACAAGCATATCCTGCTCCAGTGCAACCTGCTCTGCCTCAGCATCCTGTTGCTTATTCAAATGGGGTTTCATCCAATGCCATCGTACCTTACTATGATGATCAAAATGGAGGCCTTCCACCACCACCATGGGAGATTCAGCA] [+] EMBL CB633004 [CCAAACAAAAACAATCAGAAGCAGACGAACAGCGCCACGGAATTCATCG AAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACGGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCCGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCAGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAACAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCTATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT CAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGAAT ] [+] EMBL CB631520 [ ACAACCCCAATCAGAAGCAGACGAACAGCGCCACGGAAGTCATCG AAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACGGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCCGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCAGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAACAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCTATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATC AAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAGATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTGTGGCGGGGTACGTGCTAGATATCCACAATACTACGCAGCATATCACGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT CAACCTCTGCAAAACTATCCTGCA ] [+] EMBL AK102828 [ AGCGCCACGGAATTCATCGAAAAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACT CAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGGATGCTTTGGATCCTAGTAACAGAGAGGGGCTTAGGCAAGAGGTCATTGTTGACCTGGTGGATCAATGCCGTTCATACAAGCAGAGAGTGGTAGAGCTAGTAAACACTACCTCGAATGAGGAGTTGCTCAGCCAGGGCCTTTCTTTGAATGATGATTTGCAGAGAGTTCTAGCAAAACATGATGCTATTGCTGCAGGCGTTGCAGTTAGGTTGGAGAAAACAAAATCTCTCCAAACCAAAATTGATAGTTCTCCACCCGCAAATCCTGGGACTTCAAAAGCACCAGTTCAAAGTTCTTCAGGGACTGCAAGTGCCAGCAACCAATCTACCTTAGCACTTCCTGCTCCAGCATCATCCAGTAGTCCAAAAGCTCCTGCAGCACCAGTACCGGTTATCGACCTTCTTAGTGGAGATGATTACATCAAACCTGAACCTGCAAACTCCCTTGCACTTGTTCCTGTCACAGAATATTCAGCAGCTGATCAGAATGTGCTAGCTCTTGCAGACATGTTTGAGCAAAATAATGCCAACAGAAGCAACAATAACCTTACTAACTCTTTTAATACATCGGCACCAAATTCAAATTTCCCTGCATCACAAGCATATCCTGCTCCAGTGCAACCTGCTCTGCCTCAGCATCCTGTTGCTTATTCAAATGGGGTTTCATCCAATGCCATCGTACCTTACTATGATGATCAAAATGGAGGCCTTCCACCACCACCATGGGAGATTCAGCA] [+] EMBL CB663928 [ TTCATCG AGAAAAAATTATCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGAAATGGTGAAAATACTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAACAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACTCCAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCATCAAGAGCCAC ] [+] EMBL AU062925 [ CCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCCTTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGG GCNTCCGGTTTCGGATTTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCTGGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGATCTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAANATGTCGTGAAGTCTATCAAGAAACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGATGATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATG AATGGTG AAATAGTC AGNAAAGGCCTGATTTTCATGTG AAGAG ] consensusID : consensus_9425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence [GCTGAGAAACACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGGTATGTATATAAGTTTAAACCTTAAAAGTTAAAATTGTCTGGTTAGTTGTAAACTCTTTAAATTTTAACGCCTTATTCTTTTGAGCTTTTATCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGGTATTGTTCCACTTATATCAAATATACTGATATTCTAATTATCTTTGATTCTTCTTTCATGCTATTTTTTCTCCCCAAAGGGTATAACTCCAATAAGGTAATAAGAGAATTATTTTCATTTTTTTAAGATAACAGCATCGTAACACAATTGTTAAGCATGAGAGTGTGGTCATGCTATTTCCAAATAATATTATAGCTAGTTTAATATCAAACCATCGTGAACTAATTCAGTGACATTCCTGGAAACCTTGTTCACATGGCAGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGACGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCCTAGTAAC] [+] EMBL CB673459 [GCTGAGAAACACATACTTCATGAAATGGTGAAAATAGTCAAGAAAAGGGTATGTATATAAGTTTAAACCTTAAAAGTTAAAATTGTCTGGTTAGTTGTAAACTCTTTAAATTTTAACGCCTTATTCTTTTGAGCTTTTATCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCTGATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGCAGCATATCAGGAGCTCTTGGTATTGTTCCACTTATATCAAATATACTGATATTCTAATTATCTTTGATTCTTCTTTCATGCTATTTTTTCTCCCCAAAGGGTATAACTCCAATAAGGTAATAAGAGAATTATTTTCATTTTTTTAAGATAACAGCATCGTAACACAATTGTTAAGCATGAGAGTGTGGTCATGCTATTTCCAAATAATATTATAGCTAGTTTAATATCAAACCATCGTGAACTAATTCAGTGACATTCCTGGAAACCTTGTTCACATGGCAGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGTTCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAGTGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGAAATTCAGAATGCACGACGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCCTAGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9425#0 CCAAACAAAAACAATCAGAAGCAGACGAACAGCGCCACGGAATTCATCGAAAAAAAATTA 60 consensus_9425#1 ---------------------------------------------GCTGAGAAACA---- 11 ** *** * consensus_9425#0 TCGTGCTCGCCGAAAGCCGGCCGCTTTGAGACCATCCAAGAACCGCGAATCCTTCCTCCC 120 consensus_9425#1 -CATACTTCATGAAA--TGG------TGAAAATAGTCAAGAAAAGGGTATGTATATAAGT 62 * * ** **** ** *** * * ****** * * ** * consensus_9425#0 TTCGACGACCTTAATTTCCTCTGCCATTTGAGCCCGCCAAAGGCGGCTCCGGTTTCGGAT 180 consensus_9425#1 TTAA---ACCTTAAAAGTTAAAATTGTCTG-GTTAGTTGTAAACTCTTTAAATTTTAACG 118 ** ******* * ** * * * * * *** consensus_9425#0 TTTTTGGTAGGAGAGTTGGTTGGTTTCCGGCGAGGGGGGGAGCAGGATGCCGTCCGTGCT 240 consensus_9425#1 CCTTATTCTTTTGAGCTTTTA---TCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCT 175 ** *** * * * * * * ** ** * * ** consensus_9425#0 GGTCGACCGCGCGACGAACGACATGCTCATCGGCCCGGACTGGGCCATGAACCTGGAGAT 300 consensus_9425#1 GATAGAC-ACTTGGCAAGAAG-----TTTTTGGCGGGGTACGTGCAAGATATCCACAATA 229 * * *** * * * * * * *** ** * ** * * * * consensus_9425#0 CTGCGACACCCTCAATCGAGACCCAGGGCAAGCAAAAGATGTCGTGAAGTCTATCAAGAA 360 consensus_9425#1 CTACG-CAGCAT-ATCAGGAGCTCTTGGTATTGTTCCACTTATATCAAATATACTGATAT 287 ** ** ** * * * * * * ** * * * ** * ** * * consensus_9425#0 ACGAATTGCACACAGGAATGCGAAGGTCCAGCTTCTTGCTCTCACGTTACTGGAGACGAT 420 consensus_9425#1 TCTAATTATCTTTG---ATTCTTCTTTCATGCTATTTTTTCTCCC--CAAAGGGTATAAC 342 * **** ** * ** *** ** **** * * ** * * consensus_9425#0 GATCAAAAACTGTGGGGACATTGTCCATATGCAAGTTGCTGAGAAAGACATACTTCATGA 480 consensus_9425#1 TCCAATAAGGTAATAAGAGAAT---TATTTTCATTTTTTTAAGATA-ACA-GCATCGTAA 397 * ** * ** * * ** * ** ** * *** * *** * ** * * consensus_9425#0 AATGGTGAAAATAGTCAAGAAAAGGCCTGATTTTCATGTGAAAGAGAAGATCCTCACTCT 540 consensus_9425#1 CAC------AATTGTTAAGCATGAGAGTG-TGGTCATGCTATTTCCAAA-----TAATAT 445 * *** ** *** * * ** * ***** * ** * * * consensus_9425#0 GATAGACACTTGGCAAGAAGTTTTTGGCGGGGTACGTGCAAGATATCCACAATACTACGC 600 consensus_9425#1 TATAGCTAGTTTAATATCAAACCATCGTGAACTAATTCAGTGACATTCCTGGAA--ACCT 503 **** * ** * * * * * ** * ** ** * * ** consensus_9425#0 AGCATATCAGGAGCTCTTGCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGT 660 consensus_9425#1 TGTTCACATGGCA-----GCGTGCTGGGGCCGTATTTCCTCAAAGATCAAATGGTTCTGT 558 * * ** ****************************************** consensus_9425#0 TCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAG 720 consensus_9425#1 TCCAATATTTACTCCTCCACAGACTCAACCTCTGCAAAACTATCCTGCATCTTTACGCAG 618 ************************************************************ consensus_9425#0 TGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGA 780 consensus_9425#1 TGCTCAGCAAGAGCCACCTGGATCATCAGTGCCAGATTTGCCTTCATTGAGCCTAGCAGA 678 ************************************************************ consensus_9425#0 AATTCAGAATGCACGAGGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCC 840 consensus_9425#1 AATTCAGAATGCACGACGCATCATGGATGTTCTTTCCGAGATGTTGAATGCTTTGGATCC 738 **************** ******************************************* consensus_9425#0 TAGTAACAGAGAGGGGCTTAGGCAAGAGGTCATTGTTGACCTGGTGGATCAATGCCGTTC 900 consensus_9425#1 TAGTAAC----------------------------------------------------- 745 ******* consensus_9425#0 ATACAAGCAGAGAGTGGTAGAGCTAGTAAACACTACCTCGAATGAGGAGTTGCTCAGCCA 960 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 GGGCCTTTCTTTGAATGATGATTTGCAGAGAGTTCTAGCAAAACATGATGCTATTGCTGC 1020 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 AGGCGTTGCAGTTAGGTTGGAGAAAACAAAATCTCTCCAAACCAAAATTGATAGTTCTCC 1080 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 ACCCGCAAATCCTGGGACTTCAAAAGCACCAGTTCAAAGTTCTTCAGGGACTGCAAGTGC 1140 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 CAGCAACCAATCTACCTTAGCACTTCCTGCTCCAGCATCATCCAGTAGTCCAAAAGCTCC 1200 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 TGCAGCACCAGTACCGGTTATCGACCTTCTTAGTGGAGATGATTACATCAAACCTGAACC 1260 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 TGCAAACTCCCTTGCACTTGTTCCTGTCACAGAATATTCAGCAGCTGATCAGAATGTGCT 1320 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 AGCTCTTGCAGACATGTTTGAGCAAAATAATGCCAACAGAAGCAACAATAACCTTACTAA 1380 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 CTCTTTTAATACATCGGCACCAAATTCAAATTTCCCTGCATCACAAGCATATCCTGCTCC 1440 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 AGTGCAACCTGCTCTGCCTCAGCATCCTGTTGCTTATTCAAATGGGGTTTCATCCAATGC 1500 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 CATCGTACCTTACTATGATGATCAAAATGGAGGCCTTCCACCACCACCATGGGAGATTCA 1560 consensus_9425#1 ------------------------------------------------------------ consensus_9425#0 GCA 1563 consensus_9425#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||