These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1814 fasta sequence [TCTTTCCCCTTCCTCCTCGGCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTCTGTTCTTCTATTTATTATAGTATATATAGATCCAGTCGGCTGCTGCGTTGAAAACCAGGAGAGGATCAGATCATGGCGCAAATGGGCGTCATGGACGCTTCCCTGTGTCCTCCTTTCCACGGCCGGTCCGTCGACAAGGGGACGCGGCGCAGGCCAAGATGGGTACTCCTCGACAAGCTCGCCTACTTCGCCGGCGCCGACGTCCGCAACGCCACCACTGCTACTTCCAAAACAAGGGAGGGCCATGAAATCCAGGTGACCCTGTGCACCGCCGCCCAGCCGCAGCTCGTCTCCTACGTGTGCGTCCACTCTCCCACCCTCAATCCTGCATCCGATGACTACGCCATGGAGCCCCAGATCATCGCCGCACACGATGACCTCCTCCTCATCCGCCTCATCCTCGGCAGAGGTAACAGGTTTACTGTATCCCTCGCCGACTACTTCGTTTACCAGGCCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCCATCCCGGCCCTATGATCACCTTCACTAACCACGAGGTCGCCATCCTGCACTACATCCCTGAGGACACCCACCACCACCCGTATAGGCCACCAGGGGAATACAAGCTCCATCTCTACCACTCCCACACTCAGCAATGGACCACCACCCACTTCAACCTTGCGGCAACAATGCCAGATCTCTCTCCCTTCCACCATCGCACAACCAACGTCATCAACCTCACTCACCAATCTCCTGGTCTCATGGCTTTCGTCGACCTCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTACAGCCTGCCGCACCTCGCTACATCCCATTGCCACCACCGCTCAAGCAGGGTAAAGTCATTTCCGGCAGAGTCGACCCAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGGAGGTCGATGCTATTCAACACGAGTCGGATAGAACCGGTTACATCTCTCAGGGCTGGACGGTTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGCTGGCACATGGACTGCAAGCTCAACGCTTCTGACATCTCTCATCTGATGCCTCCTGAGCTACCCAACTACTGTCACCCAACCCCAACCTTGGAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATGGCGATGTTGTTTACTTCATGGCCAAGGTCGACCACCGTGATTACAAGGCATGGGTCATTCCTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCA-GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCAAAAAAAAAAAA] [+] EMBL AK065613 [TCTTTCCCCTTCCTCCTCGGCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTCTGTTCTTCTATTTATTATAGTATATATAGATCCAGTCGGCTGCTGCGTTGAAAACCAGGAGAGGATCAGATCATGGCGCAAATGGGCGTCATGGACGCTTCCCTGTGTCCTCCTTTCCACGGCCGGTCCGTCGACAAGGGGACGCGGCGCAGGCCAAGATGGGTACTCCTCGACAAGCTCGCCTACTTCGCCGGCGCCGACGTCCGCAACGCCACCACTGCTACTTCCAAAACAAGGGAGGGCCATGAAATCCAGGTGACCCTGTGCACCGCCGCCCAGCCGCAGCTCGTCTCCTACGTGTGCGTCCACTCTCCCACCCTCAATCCTGCATCCGATGACTACGCCATGGAGCCCCAGATCATCGCCGCACACGATGACCTCCTCCTCATCCGCCTCATCCTCGGCAGAGGTAACAGGTTTACTGTATCCCTCGCCGACTACTTCGTTTACCAGGCCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCCATCCCGGCCCTATGATCACCTTCACTAACCACGAGGTCGCCATCCTGCACTACATCCCTGAGGACACCCACCACCACCCGTATAGGCCACCAGGGGAATACAAGCTCCATCTCTACCACTCCCACACTCAGCAATGGACCACCACCCACTTCAACCTTGCGGCAACAATGCCAGATCTCTCTCCCTTCCACCATCGCACAACCAACGTCATCAACCTCACTCACCAATCTCCTGGTCTCATGGCTTTCGTCGACCTCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTACAGCCTGCCGCACCTCGCTACATCCCATTGCCACCACCGCTCAAGCAGGGTAAAGTCATTTCCGGCAGAGTCGACCCAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGGAGGTCGATGCTATTCAACACGAGTCGGATAGAACCGGTTACATCTCTCAGGGCTGGACGGTTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGCTGGCACATGGACTGCAAGCTCAACGCTTCTGACATCTCTCATCTGATGCCTCCTGAGCTACCCAACTACTGTCACCCAACCCCAACCTTGGAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATGGCGATGTTGTTTACTTCATGGCCAAGGTCGACCACCGTGATTACAAGGCATGGGTCATTCCTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCA GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGG AGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACAC ] [+] EMBL OSC26921 [ TCACCAATCTCCTGGTCTCATGGCTTTCGTCGACCTCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTACAGCCTGCCGCACCTCGCTACATCCCATTGCCACCACCGCTCAAGCAGGGTAAAGTCATTTCCGGCAGAGTCGACCCAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGGAGGTCGATGCTATTCAACACGAGTNGGATAGAACCGGTTACATCTCTCAGGGCTGGACGGTTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGC ] [+] EMBL CA758167 [ CATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCAGGGTAAAAGGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCG ] [+] EMBL AU063152 [ ACCTGCTCCA GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTAGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTNCTATCTATGTGGTACACTTGTTTTATCAAAAAAAAAAAA] [+] EMBL C97365 [ TCCA GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCAAAAAAAAAA ] consensusID : consensus_9430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [GCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTAAAAGGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTCTACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGCAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCACTCTGCTGAGTGTGTTCGGGAAAAAAAAAAAAAAAAAAAAGTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATTTTAGGGGGGGGCCCCGTCCCCCCAAATTGCTCCTCTATGGGTTATTGGCTTGTGACCCCCCCCCCCCTTGGCCCTCGTTATTACAAACCACCGAAACCGGGGAAAACCCCCTCTCTGACCCCCCCTTAATTACCACATTCCGTCCTCCCCCCCCCTCNTGCCATATCGCCTGTTTTGTCTTAAAACGCCCCTTCCTTGTCCTCCCTCACCCCCCTGTTTTCTGTTCATCATGGTAAAGGGTGCCGCCCCAATTATAATAACCCTATTACCCTCTGACGGCTATAGAATCCTATCAAACTACAATCTCACACCCTTGCTTCAAAAACACTTCTCTTGGCAGACTTATCTCTATTACCGGCCTCTATCTCA] [+] EMBL CA757889 [GCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTAAAAGGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTCTACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGCAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCACTCTGCTGAGTGTGTTCGGGAAAAAAAAAAAAAAAAAAAAGTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATTTTAGGGGGGGGCCCCGTCCCCCCAAATTGCTCCTCTATGGGTTATTGGCTTGTGACCCCCCCCCCCCTTGGCCCTCGTTATTACAAACCACCGAAACCGGGGAAAACCCCCTCTCTGACCCCCCCTTAATTACCACATTCCGTCCTCCCCCCCCCTCNTGCCATATCGCCTGTTTTGTCTTAAAACGCCCCTTCCTTGTCCTCCCTCACCCCCCTGTTTTCTGTTCATCATGGTAAAGGGTGCCGCCCCAATTATAATAACCCTATTACCCTCTGACGGCTATAGAATCCTATCAAACTACAATCTCACACCCTTGCTTCAAAAACACTTCTCTTGGCAGACTTATCTCTATTACCGGCCTCTATCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9430#0 TCTTTCCCCTTCCTCCTCGGCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGT 60 consensus_9430#1 -------------------GCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGT 41 ***************************************** consensus_9430#0 CGATTCCGATTGCGATTGAAGGTCTGTTCTTCTATTTATTATAGTATATATAGATCCAGT 120 consensus_9430#1 CGATTCCGATTGCGATTGAAGGTAAAAGGAGAAAACAGAAACAGCCTG---GGATGTTGC 98 *********************** * * ** * *** * consensus_9430#0 CGGCTGCTGCGTTGAAAACCAGGAGAGGATCAGATCATGGCGCAAATGGGCGTCATGGAC 180 consensus_9430#1 TGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTCTACAAAT--GTGGTGCTGCC 156 ** * * **** * * * * * ** ***** * * * * consensus_9430#0 GCTTCCC-TGTGTCCTCCTTTCCACGGCCGGTCCGTCGACAAGGGGACGCGGCGCAGGCC 239 consensus_9430#1 ACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATG-CGGAAGGAGGTAGCATGG--- 212 ** ** * * * * * ** * * * * * *** * ** * consensus_9430#0 AAGATGGGTACTCCT-CGACAAGCTCGCCTACTTCGCCGGCGCCGACGTCCGCAACGCCA 298 consensus_9430#1 AAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTA-ATAGTGGTA 271 *** ** * ** * * * * ** * ** ** ** * * * consensus_9430#0 CCACTGCTACTTCCAAAACAAGGGAGGGCCATGAAATCCAGGTGACCCTGTGCACCGCCG 358 consensus_9430#1 ATTATCATATTTTATTGATATAGTGTGATCCCGTA-TCAAGA-----CTATGATCCCTCG 325 * ** ** * * * * * * * ** ** ** ** ** ** consensus_9430#0 CCCAGCCGCAGCTCGTCTCCTACGTGTGCGTCCACTCTCCCACCCTCAATCCTGCATCCG 418 consensus_9430#1 GTTATTCTCT-CCTATGTCGTGCTTGTATGTGCAAGGGACGACCTGAA----TGAACTCA 380 * * * * * ** * * *** ** ** * *** * ** * * consensus_9430#0 ATGACTACGCCATGGAGCCCCAGATCATCGCCGCACACGATGACCTCCTCCTCATCCGCC 478 consensus_9430#1 GTTCAGACATTTTTCTGTCCT--ATCTATGTGGTACACT-TGTTTTATCACTCTGCTGAG 437 * ** * * ** *** * * **** ** * *** * * consensus_9430#0 TCATCCTCGGCAGAGGTAACAGGTTTACTGTATCCCTCGCCGACTACTTCGTTTACCAGG 538 consensus_9430#1 T-GTGTTCGGGAAAAAAAAAAAAAAAAAAAAGTAAATGAAAAAAAA--------AAAAAA 488 * * **** * * ** * * * * * * * * consensus_9430#0 CCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCCATCCCGGCCCTATGA 598 consensus_9430#1 AAAAAAAAAAAAAAAAAAAAAAAATAAATTTTAGGGGGGGGCCCCGTCCC--CCCAAATT 546 * * * * * * * * * *** **** *** * consensus_9430#0 TCACCTTCACTAACCACGAGGTCGCCATCCTGCACTACATCCCTGAGGACACCCACCACC 658 consensus_9430#1 GCTCCTCTATGGGTTATTGGCTTGTGACCCCCCCCC---CCCTTGGCCCTCGTTATTACA 603 * *** * * * * * * ** * * ** ** * ** consensus_9430#0 ACCCGTATAGGCCACCAGGGGAATACAAGCTCCATCTCTACCACTCCCACACTCAGCAAT 718 consensus_9430#1 AACCACCGAAACC----GGGGAA----AACCCCCTCTCTGACCCCCCCTTAATTACCACA 655 * ** * ** ****** * * ** ***** * * *** * * * ** consensus_9430#0 GGACCACCACCCACTTCAACCTTGCGGCAACAATGCCAGATCTCTCTCCCTTCCACCATC 778 consensus_9430#1 ----TTCCGTCCTCCCCCCCCCTCNTGCCATATCGCCTGTTTTGTCTTAAAACGCCCCTT 711 ** ** * * ** * ** * * *** * * * *** * ** * consensus_9430#0 GCACAACCAACGTCATCAACCTCACTCACCAATCTCCTGGTCTCATGGCTTTCGTCGACC 838 consensus_9430#1 CCTTGTCCTCCCTCACCCCCCT-GTTTTCTGTTCATCATGGTAAAGGGTGCCGCCCCAAT 770 * ** * *** * *** * * ** * * * ** * * consensus_9430#0 TCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTA-CAGCCTGCCGCACCTCGC 897 consensus_9430#1 TATAATAAC-CCTATTACCCTCTGACGGCTATAGAATCCTATCAAACTACA--ATCTCAC 827 * * * *** ** * * * * * * ** ** ** * * *** * consensus_9430#0 TACATCCCATTGCCACCACCGCTCA-AGCAGGGTAAAGTC-ATTTCCGGCAGAGTCGACC 955 consensus_9430#1 ACCCTTGCTTCAAAAACACTTCTCTTGGCAGACTTATCTCTATTACCGGCC---TCTATC 884 * * * * * *** *** **** * * ** *** ***** ** * * consensus_9430#0 CAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGG 1015 consensus_9430#1 TCA--------------------------------------------------------- 887 * consensus_9430#0 AGGTCGATGCTATTCAACACGAGTCGGATAGAACCGGTTACATCTCTCAGGGCTGGACGG 1075 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 TTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGCTGGCACATGGACTGCA 1135 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 AGCTCAACGCTTCTGACATCTCTCATCTGATGCCTCCTGAGCTACCCAACTACTGTCACC 1195 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 CAACCCCAACCTTGGAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATG 1255 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 GCGATGTTGTTTACTTCATGGCCAAGGTCGACCACCGTGATTACAAGGCATGGGTCATTC 1315 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 CTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTA 1375 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 CTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTC 1435 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 CAGGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGA 1495 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 AGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGC 1555 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 AAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTAT 1615 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 TATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGA 1675 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 TCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAA 1735 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 GGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTG 1795 consensus_9430#1 ------------------------------------------------------------ consensus_9430#0 TTTTATCAAAAAAAAAAAA 1814 consensus_9430#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||