These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1233 fasta sequence [CCCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACGCGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCGTCGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAGGCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAACCGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAAAGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCAGAGGCCACTGCTGTTGCTGCTTAAA--TTAAGATGAATAATG--AAGG-AACATGGCTT-CATGCCCAGGCAGT-CCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCTTGTCTATGTATCCACATTTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTATTTAGAAATCTGAACTGAAATTGTACATGCTTATGCTAATACAACCAGAT] [+] EMBL AK068460 [CCCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACGCGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCGTCGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAGGCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAACCGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAAAGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCAGAGGCCACTGCTGTTGCTGCTTAAA TTAAGATGAATAATG AAGG AACATGGCTT CATGCCCAGGCAGT CCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCTTGTCTATGTATCCACATTTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTATTTAGAAATCTGAACTGAAATTGTACATGCTTATGCTAATACAACCAGAT] [+] EMBL AK105327 [ CCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACGCGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCGTTGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAGGCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAACCGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGT ] [+] EMBL C98739 [ GCTTAAAATTTAAGATGAATAATGGNAAGGAAACATGGCTTNNATGCCCAGGCAGTCCCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCTTGTCTATGTATCCACATTTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTAaaaa ] consensusID : consensus_9431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [CGGANACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCACNTCGCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACNACGCGTCGAACCGATCCNCCGGCGACGAGGAGGAGGGGGACGACGACGATCACNACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAACCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGGAGCAATGGCGACTTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGGTAATTGTGCACTTTTGAACGCAAC] [+] EMBL C98738 [CGGANACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCACNTCGCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACNACGCGTCGAACCGATCCNCCGGCGACGAGGAGGAGGGGGACGACGACGATCACNACGACGAGGAGGGGAGCGGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAACCCCCCAGCGGGAAGACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGCATCAGTTTAAGGTGGAGCAATGGCGACTTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGATAAGGTAATTGTGCACTTTTGAACGCAAC] consensusID : consensus_9431#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [ATCTGAAGGNCCCTGTCTATGTATCCACATCTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU092772 [ATCTGAAGGNCCCTGTCTATGTATCCACATCTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTTCCCATCTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9431#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [GATCGCGGGCGGCCGCAATCTGAGANGTTAATTTTNANTTGCGATCGCNAGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAANGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAAC] [+] EMBL AU063189 [GATCGCGGGCGGCCGCAATCTGAGANGTTAATTTTNANTTGCGATCGCNAGCTTGGGTCACAATCTCAAACAGTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAAAAAGAAANGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 CCCTTCCTCCCCTTCGCCTCCCTCTCCGCCGCCGCCGCCGCCGCCGCAGCCATGGCGACG 60 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 CGGCGATGCCTCCTCCGCCTCCTCTCGCGCCGCCTCCTCGCCCACACCCCTCAACCCGCG 120 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 TCGCTGGCCTCGATCGCGACGCGAACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCAG 180 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GCATCCCGCGTCCTCGCCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACTACGCGTCGAAC 240 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 CGATCCTCCGGCGACGAGGAGGAGGGGGACGACGACGATCACTACGACGAGGAGGGGAGC 300 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GGGGATGAGTGGGGGGAGGAGGAGGAGGAGGCCGTGGCGGCGAAGCCCCCCAGCGGGAAG 360 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 ACGGAGGAGGAGAAGGTGGCGGAGGCGGCGGAGATAGGGTACACGGTGGTTGGCCCGCTC 420 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GGTGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGT 480 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 TCGCATCAGTTTAAGGTGAGCAATGGCGACTCGATCTTCACGGAAAGGTTGAAGTTTTGC 540 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GATGTGAATGATAAGTTAATTTTGAATCGAGTTCTCATGCTTGGGTCACAATCTCAAACA 600 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GTCATTGGGAGGCCAACTCTTCCTGATGCTACTGTTCATGCTGTCGTTGAGGAGCATGCC 660 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 CTAGATGCAAAGGTTATCATATTCAAAAAGAAAAGAAGAAAAAATTACCGTCGAACAAAG 720 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCA 780 consensus_9431#1 ------------------------------------------------------------ consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 GAGGCCACTGCTGTTGCTGCTTAAATTAAGATGAATAATGAAGGAACATGGCTTCATGCC 840 consensus_9431#1 ----CGGANACCCTAGCCTCCTTGGCCAAGCCCCTCGTGCCGCACNTCGCCGCGTCCTCG 56 consensus_9431#2 ------------------------------------------------------------ consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 CAGGCAGTCCTTCATACTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGC 900 consensus_9431#1 CCTCCCCCCGCCTCTTCCCCTCGCGCTGCCACNACGCGTCGAACCGATCCNCCGGCGACG 116 consensus_9431#2 ------------------------------ATCTGAAGGNCCCTGTCTATGTATCCACAT 30 consensus_9431#3 ------------------------------------------------------------ consensus_9431#0 TTATTGTCAGTCACTGATTGAAAGAACCATATCTGAAGGTCT-TGTCTATGTATCCACAT 959 consensus_9431#1 AGGAGGAGGGGGACGACGACGATCACNACGACGAGGAGGGGAGCGGGGATGAGTGGGGGG 176 consensus_9431#2 CTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTT 90 consensus_9431#3 --------------GATCGCGGGCGGCCGCAATCTGAGANGTTAATTTTNANTTGCGATC 46 consensus_9431#0 TTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCAGTTT 1019 consensus_9431#1 AGGAGGAGGAGGAGGCCGTGGCGGCGAACCCCCCAGCGGGAAGACGGAGGAGGAGAAGGT 236 * * * consensus_9431#2 GGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCT-T 149 consensus_9431#3 GCNAGCTTGGGTCACAATCTCAA---ACAGTCATTGGGAGGCCAACTCTTCCTGATGC-T 102 consensus_9431#0 GGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCT-T 1078 consensus_9431#1 GGCGGAGGCGGCGGAGATAGGGTAC-ACGGTGGTTGGCCCGCTCGGTGCCGACGAGAAGC 295 * * ** ** * * * consensus_9431#2 TCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCA-ATGCATCAGT-GCCATGTATAC 207 consensus_9431#3 ACTGTTCATGCTGTCGT----TGAGGAGCATGCCCTAGATGCAAAGGTTATCATATTCAA 158 consensus_9431#0 TCTCCATTTACTAGCGTACCTCCTTGAATGTGTTCCA-ATGCATCAGT-GCCATGTATAC 1136 consensus_9431#1 CCTTCAAGCCCTACGAGCCCGTGTTCGCCGTCGTCCAGATTGGTTCGC-ATCA-GTTTAA 353 ** ** * * * ** * ** * * consensus_9431#2 CGTTCTAGCCATGAATAATGA-----AACTGAAAGTTTGTGGTTCCCATCTA---AAAAA 259 consensus_9431#3 AAAGAAANGAAGAAAAAATTACCGTCGAACAAAGGGCCATCGTCAGGAATTG---ACAAA 215 consensus_9431#0 CGTTCTAGCCATGAATAATGA-----AACTGAAAGTTTGTGGTTCCCATCTATTTAGAAA 1191 consensus_9431#1 GGTGGAGCAATGGCGACTTCGATCTTCACGGAAAGGTTGAAGTTTTGCGATGTGAATGAT 413 * * ** * ** * * * consensus_9431#2 AAAAAAAAAAAAA----------------------------- 272 consensus_9431#3 GCTGAGAATAAC------------------------------ 227 consensus_9431#0 TCTGAACTGAAATTGTACATGCTTATGCTAATACAACCAGAT 1233 consensus_9431#1 AAGGTAATTGTGCACTTTTGAACGCAAC-------------- 441 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||