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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1433 fasta sequence
[CGGTTTCGGATTTGTTGCCGCAAAAATCAAAATAAAACCCGGGTGGAGGAGGAGGGAGAAGATGAAGCAAACGAGAGAGATCGAGCTTGAGGCCGGGTGGAATCGCGAGGGGATGTCATGGCGAAGCGGCGGGCAGAGTCCGAGCTTGAGCTGGTGGAGGCGGAAGCGGAAGCGGAGGCGGAGGCGGAGGCGGAGAAGAATGGGAGGCGAGCAGCAGGTAGTCAGGACGGGGTGAATCGCGCGTTCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTGGCAC-AGATTTTACAAGGTCGCCGATACCCGAGAGACTCGTATGGAGGCAATGATGCTGTCAAACCCAACCAATTGCCGGCCACACATGTGGGCTTGCAAGGCGCACAGTGTGCAATTCATGATGCAGATATTCTCGCTCAAGCTATCCAATATCACTGCTGCTGTTGATGGCCCAGTTCACTTGTATGGATACTTTGCTGTCCGGGATCATTTGGACCCGCTACGCAACTACATCTTCAACCGCACCAGGGATGACCCTTTCATCATGGGGCAAGACAATGGCGTTGATTCGGATAATTCATTGATACCAATGTCAGGCCCCAAGAGAGGCATTGGAAACCAAGTTCGTGTGCTCATCGAGTTCGACATGAAGATCAAGAACGGAGAGACACAAGACGATGATTTTCAGCTCATCGATGGTGCCATTATCTGCAGCGAATTCGTGCTTCCCGATAGAGTGTTTACGCAACGGATTGAGGGTGATTGTGGTGCGGTCGACATTAGTCGAGCCCTTTTTCACGAAGCAGTGGAGGCCACAATACAAGTTAGCATATCACAAGTGCATGTCAATGGCTTGAGCTTATCTTTATATTCTTATACCAGTCGAATCCCTGAAAAGATTCGGCTCTTTGATGGTGTCATTTCCAAGCCATGTGACCTGAATAGGGTAGTTGCTGTGGTGGAGAATACACCTTTGTTTTTAATCTTCAGGGCTGTTCATAGGGATGGCTCGGATTATGATATCCCTAAATACTGTCCATTGGTCTTCAAGGTTGATCAGGGGGATGGCTCGTATCGTGTCTCTGAATATTGTCCATTCAAAGCTAGAAGACATGGATATGACATGAAAGAGCTTAAACTTGGTGGCGCCCGTGTACTGTTGAAGGTGTCTTGGTCAACTTTGAAGTGATTTTGAATATTCCTGGGGTATACATAATCTATGCTAAGCAGAAATAGCGATATTTCTGTGTATTGACTAGTAGGCAAATGTTTGGGCCTTATTTTGAGTACATATTTAAGTTTTTTATTTGTTGTAGAAGTTCGACAGGTGAAGGATGCCACACTCTTATCTGTTCTTATTTATTGCATATTAATGCAGATTAAATTTGGTATTGCTACCTGATAAAAAGA]
[+] EMBL AK064595 [CGGTTTCGGATTTGTTGCCGCAAAAATCAAAATAAAACCCGGGTGGAGGAGGAGGGAGAAGATGAAGCAAACGAGAGAGATCGAGCTTGAGGCCGGGTGGAATCGCGAGGGGATGTCATGGCGAAGCGGCGGGCAGAGTCCGAGCTTGAGCTGGTGGAGGCGGAAGCGGAAGCGGAGGCGGAGGCGGAGGCGGAGAAGAATGGGAGGCGAGCAGCAGGTAGTCAGGACGGGGTGAATCGCGCGTTCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTGGCAC AGATTTTACAAGGTCGCCGATACCCGAGAGACTCGTATGGAGGCAATGATGCTGTCAAACCCAACCAATTGCCGGCCACACATGTGGGCTTGCAAGGCGCACAGTGTGCAATTCATGATGCAGATATTCTCGCTCAAGCTATCCAATATCACTGCTGCTGTTGATGGCCCAGTTCACTTGTATGGATACTTTGCTGTCCGGGATCATTTGGACCCGCTACGCAACTACATCTTCAACCGCACCAGGGATGACCCTTTCATCATGGGGCAAGACAATGGCGTTGATTCGGATAATTCATTGATACCAATGTCAGGCCCCAAGAGAGGCATTGGAAACCAAGTTCGTGTGCTCATCGAGTTCGACATGAAGATCAAGAACGGAGAGACACAAGACGATGATTTTCAGCTCATCGATGGTGCCATTATCTGCAGCGAATTCGTGCTTCCCGATAGAGTGTTTACGCAACGGATTGAGGGTGATTGTGGTGCGGTCGACATTAGTCGAGCCCTTTTTCACGAAGCAGTGGAGGCCACAATACAAGTTAGCATATCACAAGTGCATGTCAATGGCTTGAGCTTATCTTTATATTCTTATACCAGTCGAATCCCTGAAAAGATTCGGCTCTTTGATGGTGTCATTTCCAAGCCATGTGACCTGAATAGGGTAGTTGCTGTGGTGGAGAATACACCTTTGTTTTTAATCTTCAGGGCTGTTCATAGGGATGGCTCGGATTATGATATCCCTAAATACTGTCCATTGGTCTTCAAGGTTGATCAGGGGGATGGCTCGTATCGTGTCTCTGAATATTGTCCATTCAAAGCTAGAAGACATGGATATGACATGAAAGAGCTTAAACTTGGTGGCGCCCGTGTACTGTTGAAGGTGTCTTGGTCAACTTTGAAGTGATTTTGAATATTCCTGGGGTATACATAATCTATGCTAAGCAGAAATAGCGATATTTCTGTGTATTGACTAGTAGGCAAATGTTTGGGCCTTATTTTGAGTACATATTTAAGTTTTTTATTTGTTGTAGAAGTTCGACAGGTGAAGGATGCCACACTCTTATCTGTTCTTATTTATTGCATATTAATGCAGATTAAATT ]
[+] EMBL AU064003 [ TGCCGCAAAAATCAAAATAAAACCCGGGTGGAGGAGGAGGGAGAAGATGAAGCAAACGAGAGAGATCGAGCTTGAGGCCGGGTGGAATCGCGANGGGATNTCATGGCGAA CGGCGGGCAGANTCCGANCTTGAGCTGGTGGAGGCGGAAGCGGAAGCGNAGGCGGAGGCGGANGCGGAGAAGAATNGGAGGCGANCAGCANGTANTCAGGACGGGGTGAATCGCGCGTTCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTGGCACAAGATTTTACAAGGTCGCCGNTACCCGAAANACTCGTATGGAGGCANTGATGCTGTCAA ]
[+] EMBL CB668978 [ AATGGGAGGCGAGCAGCAGGTAGTCAGGACGGGGTGAATCGCGCGTTCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTGGCAC AGATTTTACAAGGTCGCCGATACCCGAGAGACTCGTATGGAGGCAATGATGCTGTCAAACCCAACCAATTGCCGGCCACACATGTGGGCTTGCAAGGCGCACAGTGTGCAATTCATGATGCAGATATTCTCGCTCAAGCTATCCAATATCACTGCTGCTGTTGATGGCCCAGTTCACTTGTATGGATACTTTGCTGTCCGGGATCATTTGGACCCGCTACGCAACTACATCTTCAACCGCACCAGGGATGACCCTTTCATCATGGGGCAAGACAATGGCGTTGATTCGGATAATTCATTGATACCAATGTCACGCCCCAAGAGAGGCATTGGAAACCAAGTTCGTGTGCTCATCGAGTTCGACATGAAGATCAAGAACGGAGAGACACAAGACGATGATTTTCAGCTCATCGATGGTGCCATTATCTGCAGCGA ]
[-] EMBL CB668979 [ TCAAGAACGGAGAGACACAAGGCGATGATTTTCAGCTCATCGATGGTGCCATTATCTGCAGCGAATTCGTGCTTCCCGATAGAGTGTTTACGCAACGGATTGAGGGTGATTGTGGTGCGGTCGACATTAGTCGAGCCCTTTTTCACGAAGCAGTGGAGGCCACAATACAAGTTAGCATATCACAAGTGCATGTCAATGGCTTGAGCTTATCTTTATATTCTTATACCAGTCGAATCCCTGAAAAGATTCGGCTCTTTGATGGTGTCATTTCCAAGCCATGTGACCTGAATAGGGTAGTTGCTGTGGTGGAGAATACACCTTTGTTTTTAATCTTCAGGGCTGTTCATAGGGATGGCTCGGATTATGATATCCCTAAATACTGTCCATTGGTCTTCAAGGTTGATCAGGGGGATGGCTCGTATCGTGTCTCTGAATATTGTCCATTCAAAGCTAGAAGACATGGATATGACATGAAAGAGCTTAAACTTGGTGGCGCCCGTGTACTGTTGAAGGTGTCTTGGTCAACTTTGAAGTGATTTTGAATATTCCTGGGGTATACATAATCTATGCTAAGCAGAAATAGCGATATTTCTGTGTATTGACTAGTAGGCAAATGTTTGGGCCTTATTTTGAGTACATATTTAAGTTTTTTATTTGTTGTAGAAGTTCGACAGGTGAAGGATGCCACACTCTTATCTGTTCTTATTTATTGCAGATTAATGCAGATTAAATTTGGTATTGCTACCTGATAAAAAGA]
[+] EMBL AU165595 [ GCGATATNTCTGTGTATTGACTAGTAGGCAAATGTTTGGGCCTTNTTTTGAGTACATATTTAAGTTTTTTATTTGTTGTAGAAGTTCGNCAGGTGAAGGATGCCACACTCTTATCTNTTCTTATTTATTGCATATTAATGCAGATTAAATTTGGTATTGTTNCCTGAAAAA ]
consensusID : consensus_9436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 967 fasta sequence
[GAGGCGAGCAGCTGGTAGTCAGGACGGGGTGAATCGCGCGTTGATCCTCGACTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTTGGCACAGGTTTTACAAGGTCGCCGATACCCGAGAGACTCTCAAGGAGGCAATGATGCTGTCAAATCCAACCAATTGCCGACCACACATGTGGGCTTGCAATATTCACGAAGAACAATTCATGATGCAGATATTCTCGCTCAAGTTATCCAATATCACTGCTACTGTTGATGGCCCAGTTCACTTGTATGGATACTTTGCAGTACGGGATCATTTGGACCCGCTACGCAACTACATCTTCAACCGCACCAGAGATGATCCTTTCATCATGGGGCAAGACAATGGTGTTGATTCAGATAATTCCTTGATACCAATGCCTGGCCCCAAGAGAGGCATTGGAAACCAAGCTCGTGTGCTCATTGAGTTTGACATGAAGATCAAGAATGGAGAGACACGAGATGATGATTTTCAGCTCATAGATGGTGCTATCATATGCAGCGAATTCGTGCTTCCCAATAGAGTGTTTACGCAACGGATTGAGGGTGATTGTGGTGCGGTGGACATAAGTCTTGCACTTCTCCACAGTACGGTGGAGGCCACAGTACAAGTTAGCATATCACAAGTGCATGGCAATGGCTTCAGCTTATCTTTATATTCTTATACCAGTAGAATCCCTGAAAAAATTCAGCTCTTCGATGGATTCATTTCCAAGCCATGTGATCTGAATAGGTTTGTAGTTGCTGTGGTGGTGAATACTCCCTTGATTTTAATCTTCAAGATTGACAAGAGAGATGGCTCAGATCATGTTCCTGGATGTTGTGCGTTCAAAGCTAGAACACATGGATATGAGTATGACATGCAAGAGCTCAAACTTGGTTGCACCAATATACTGGTGAAGCTGTCTTGGTCAACTTTGGAGTGATTTTGAAC]
[+] EMBL AK066342 [GAGGCGAGCAGCTGGTAGTCAGGACGGGGTGAATCGCGCGTTGATCCTCGACTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTTGGCACAGGTTTTACAAGGTCGCCGATACCCGAGAGACTCTCAAGGAGGCAATGATGCTGTCAAATCCAACCAATTGCCGACCACACATGTGGGCTTGCAATATTCACGAAGAACAATTCATGATGCAGATATTCTCGCTCAAGTTATCCAATATCACTGCTACTGTTGATGGCCCAGTTCACTTGTATGGATACTTTGCAGTACGGGATCATTTGGACCCGCTACGCAACTACATCTTCAACCGCACCAGAGATGATCCTTTCATCATGGGGCAAGACAATGGTGTTGATTCAGATAATTCCTTGATACCAATGCCTGGCCCCAAGAGAGGCATTGGAAACCAAGCTCGTGTGCTCATTGAGTTTGACATGAAGATCAAGAATGGAGAGACACGAGATGATGATTTTCAGCTCATAGATGGTGCTATCATATGCAGCGAATTCGTGCTTCCCAATAGAGTGTTTACGCAACGGATTGAGGGTGATTGTGGTGCGGTGGACATAAGTCTTGCACTTCTCCACAGTACGGTGGAGGCCACAGTACAAGTTAGCATATCACAAGTGCATGGCAATGGCTTCAGCTTATCTTTATATTCTTATACCAGTAGAATCCCTGAAAAAATTCAGCTCTTCGATGGATTCATTTCCAAGCCATGTGATCTGAATAGGTTTGTAGTTGCTGTGGTGGTGAATACTCCCTTGATTTTAATCTTCAAGATTGACAAGAGAGATGGCTCAGATCATGTTCCTGGATGTTGTGCGTTCAAAGCTAGAACACATGGATATGAGTATGACATGCAAGAGCTCAAACTTGGTTGCACCAATATACTGGTGAAGCTGTCTTGGTCAACTTTGGAGTGATTTTGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9436#0 CGGTTTCGGATTTGTTGCCGCAAAAATCAAAATAAAACCCGGGTGGAGGAGGAGGGAGAA 60
consensus_9436#1 ------------------------------------------------------------
consensus_9436#0 GATGAAGCAAACGAGAGAGATCGAGCTTGAGGCCGGGTGGAATCGCGAGGGGATGTCATG 120
consensus_9436#1 ------------------------------------------------------------
consensus_9436#0 GCGAAGCGGCGGGCAGAGTCCGAGCTTGAGCTGGTGGAGGCGGAAGCGGAAGCGGAGGCG 180
consensus_9436#1 ------------------------------------------------------------
consensus_9436#0 GAGGCGGAGGCGGAGAAGAATGGGAGGCGAGCAGCAGGTAGTCAGGACGGGGTGAATCGC 240
consensus_9436#1 -----------------------GAGGCGAGCAGCTGGTAGTCAGGACGGGGTGAATCGC 37
************ ************************
consensus_9436#0 GCGTTCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTT 300
consensus_9436#1 GCGTTGATCCTCGACTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTT 97
***** ******** *********************************************
consensus_9436#0 T-GGCACAGATTTTACAAGGTCGCCGATACCCGAGAGACTCGTATGGAGGCAATGATGCT 359
consensus_9436#1 TTGGCACAGGTTTTACAAGGTCGCCGATACCCGAGAGACTCTCAAGGAGGCAATGATGCT 157
* ******* ******************************* * ***************
consensus_9436#0 GTCAAACCCAACCAATTGCCGGCCACACATGTGGGCTTGCAAGGCGCACAGTGTGCAATT 419
consensus_9436#1 GTCAAATCCAACCAATTGCCGACCACACATGTGGGCTTGCAATATTCACGAAGAACAATT 217
****** ************** ******************** *** * *****
consensus_9436#0 CATGATGCAGATATTCTCGCTCAAGCTATCCAATATCACTGCTGCTGTTGATGGCCCAGT 479
consensus_9436#1 CATGATGCAGATATTCTCGCTCAAGTTATCCAATATCACTGCTACTGTTGATGGCCCAGT 277
************************* ***************** ****************
consensus_9436#0 TCACTTGTATGGATACTTTGCTGTCCGGGATCATTTGGACCCGCTACGCAACTACATCTT 539
consensus_9436#1 TCACTTGTATGGATACTTTGCAGTACGGGATCATTTGGACCCGCTACGCAACTACATCTT 337
********************* ** ***********************************
consensus_9436#0 CAACCGCACCAGGGATGACCCTTTCATCATGGGGCAAGACAATGGCGTTGATTCGGATAA 599
consensus_9436#1 CAACCGCACCAGAGATGATCCTTTCATCATGGGGCAAGACAATGGTGTTGATTCAGATAA 397
************ ***** ************************** ******** *****
consensus_9436#0 TTCATTGATACCAATGTCAGGCCCCAAGAGAGGCATTGGAAACCAAGTTCGTGTGCTCAT 659
consensus_9436#1 TTCCTTGATACCAATGCCTGGCCCCAAGAGAGGCATTGGAAACCAAGCTCGTGTGCTCAT 457
*** ************ * **************************** ************
consensus_9436#0 CGAGTTCGACATGAAGATCAAGAACGGAGAGACACAAGACGATGATTTTCAGCTCATCGA 719
consensus_9436#1 TGAGTTTGACATGAAGATCAAGAATGGAGAGACACGAGATGATGATTTTCAGCTCATAGA 517
***** ***************** ********** *** ***************** **
consensus_9436#0 TGGTGCCATTATCTGCAGCGAATTCGTGCTTCCCGATAGAGTGTTTACGCAACGGATTGA 779
consensus_9436#1 TGGTGCTATCATATGCAGCGAATTCGTGCTTCCCAATAGAGTGTTTACGCAACGGATTGA 577
****** ** ** ********************* *************************
consensus_9436#0 GGGTGATTGTGGTGCGGTCGACATTAGTCGAGCCCTTTTTCACGAAGCAGTGGAGGCCAC 839
consensus_9436#1 GGGTGATTGTGGTGCGGTGGACATAAGTCTTGCACTTCTCCACAGTACGGTGGAGGCCAC 637
****************** ***** **** ** *** * *** * ***********
consensus_9436#0 AATACAAGTTAGCATATCACAAGTGCATGTCAATGGCTTGAGCTTATCTTTATATTCTTA 899
consensus_9436#1 AGTACAAGTTAGCATATCACAAGTGCATGGCAATGGCTTCAGCTTATCTTTATATTCTTA 697
* *************************** ********* ********************
consensus_9436#0 TACCAGTCGAATCCCTGAAAAGATTCGGCTCTTTGATGGTGTCATTTCCAAGCCATGTGA 959
consensus_9436#1 TACCAGTAGAATCCCTGAAAAAATTCAGCTCTTCGATGGATTCATTTCCAAGCCATGTGA 757
******* ************* **** ****** ***** *******************
consensus_9436#0 CCTGAATAGG---GTAGTTGCTGTGGTGGAGAATACACCTTTGTTTTTAATCTTCAGGGC 1016
consensus_9436#1 TCTGAATAGGTTTGTAGTTGCTGTGGTGGTGAATACTCCCTTGATTTTAATCTTCAAGAT 817
********* **************** ****** ** *** ************ *
consensus_9436#0 TGTTCATAGGGATGGCTCGGATTATGATATCCCTAAATACTGTCCATTGGTCTTCAAGGT 1076
consensus_9436#1 TGACAAGAGAGATGGCTCAGATCATG---TTCCTGGATGTTGTGCG------TTCAAAGC 868
** * ** ******** *** *** * *** ** *** * ***** *
consensus_9436#0 TGATCAGGGGGATGGCTCGTATCGTGTCTCTGAATATTGTCCATTCAAAGCTAGAAGACA 1136
consensus_9436#1 TA-----------------------------GAACA-----CAT-----------GGATA 883
* *** * *** ** *
consensus_9436#0 TGGATATGACATGAAAGAGCTTAAACTTGGTGGCGCCCGTGTACTGTTGAAGGTGTCTTG 1196
consensus_9436#1 TGAGTATGACATGCAAGAGCTCAAACTTGGTTGCACCAATATACTGGTGAAGCTGTCTTG 943
** ********* ******* ********* ** ** * ***** ***** *******
consensus_9436#0 GTCAACTTTGAAGTGATTTTGAATATTCCTGGGGTATACATAATCTATGCTAAGCAGAAA 1256
consensus_9436#1 GTCAACTTTGGAGTGATTTTGAAC------------------------------------ 967
********** ************
consensus_9436#0 TAGCGATATTTCTGTGTATTGACTAGTAGGCAAATGTTTGGGCCTTATTTTGAGTACATA 1316
consensus_9436#1 ------------------------------------------------------------
consensus_9436#0 TTTAAGTTTTTTATTTGTTGTAGAAGTTCGACAGGTGAAGGATGCCACACTCTTATCTGT 1376
consensus_9436#1 ------------------------------------------------------------
consensus_9436#0 TCTTATTTATTGCATATTAATGCAGATTAAATTTGGTATTGCTACCTGATAAAAAGA 1433
consensus_9436#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||