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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1269 fasta sequence
[TAGCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGC-TGC-TGACGAGCCCGC-TGATTTTGGC-TCGATTTAATCCCATTTTAC-GGGTGTTTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGGAT-CGATTTCGATCTGTCTGA-GTGGTTCTCTGGGCG-TTGTTGGTGC-GTTCTTGATCCGAGA-GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAAG-AAGNTGGTACAATTTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCTGTTGTAAATCCATCGCTGGTTCCTAGCAATATGAAAGATGCCAGCTTGCTTTGTTTTGTATCTGGACATATCATAGTGCTTGTATTCATTTATCCTTTTGTAGTTTTCCTTCTCGTAATATTTCAGTTCATTTGTTTGCTACATTGTGATGAGACAATGTGCACTATTGGCGCCAAAGTGTCCTTGATTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU064252 [TAGCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGCTTGCTTGACGAGCCCGCTTGATTTTGGCTTCGATTTAATCCCATTTTACGGGGTGTTTTGNATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGGNATCTTGGGGGGAATTGGATCCGATTTCGATCTGTCTGAGGTGGTTCTCTGGGCGTTTGTTGGTGCGGTTCTTGATCCCAGAGGGTAAGAGgaatt ]
[+] EMBL CB635371 [ GCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGC TGC TGACGAGCCCGC TGATTTTGGC TCGATTTAATCCCATTTTAC GGGTGTTTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGGAT CGATTTCGATCTGTCTGA GTGGTTCTCTGGGCG TTGTTGGTGC GTTCTTGATCCGAGA GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGT ]
[+] EMBL CB633425 [ TCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGC TGC TGACGAGCCCGC TGATTTTGGC TCGATTTAATCCCATTTTAC GGGTGTTTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGGAT CGATTTCGATCTGTCTGA GTGGTTCTCTGGGCG TTGTTGGTGC GTTCTTGATCCGAGA GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAAG AAGNTGGTACAA ]
[-] EMBL CA759127 [ TGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATTTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCTGTTGTAAATCCATCGCTGGTTCCTAGCAATATGAAAGATGCCAGCTTGCTTTGTTTTGTATCTGGACATATCATAGTGCTTGTATTCATTTATCCTTTTGTAGTTTTCCTTCTCGTAATATTTCAGTTCATTTGTTTGCTACATTGTGATGAGACAATGTGCACTATTGGCGCCAAAGTGTCCTTGATTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_9437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCAAATTTTTCTTATCGGAGAGGGCCAAGCCAAGTCTTTATGGAGGGTGCTGAAGATTTACAGGATGCAGCCTACTAAGCTGGAAATCTCGGAAGATCCTCCCAGTTTCCCAGAGAATGAATGCCAAGAACTCCTGTGTCGAATTCTTTAGGGGAATAGATTGATTGGTGGCGTGAAATTCGTCCCGAAATGCTATGGAATAGTTGGTAATGAACCAGGAAATGCGATACCATAGTTTATTGATCAAACTTCCTGGTAGTTCAAAACTTCAAATTATAGCATTTCCTCCCTCTTTGCTTTTCTCAGGTTTTATAAAATTTCTTGGCCCTTATTCCATGGTTTTAATTACCAGAAAAAGGAAAGTTGGTCCAATTTCCGGTCATGAAATATATTCTGTCGGCAAGAGCCAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTTTTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCGGTTGTAAATCCATCGCTGGTTCCTAGCAATATAAAAAATTCCAGCCTGCTTTGTTTTGTATCTGGCCATATCATAGTGCTTGTATTCATTTATCCTTTGGTAGTTTTCCTTCTCGTAATATTTCAGTTCTTTTGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759126 [CCAAATTTTTCTTATCGGAGAGGGCCAAGCCAAGTCTTTATGGAGGGTGCTGAAGATTTACAGGATGCAGCCTACTAAGCTGGAAATCTCGGAAGATCCTCCCAGTTTCCCAGAGAATGAATGCCAAGAACTCCTGTGTCGAATTCTTTAGGGGAATAGATTGATTGGTGGCGTGAAATTCGTCCCGAAATGCTATGGAATAGTTGGTAATGAACCAGGAAATGCGATACCATAGTTTATTGATCAAACTTCCTGGTAGTTCAAAACTTCAAATTATAGCATTTCCTCCCTCTTTGCTTTTCTCAGGTTTTATAAAATTTCTTGGCCCTTATTCCATGGTTTTAATTACCAGAAAAAGGAAAGTTGGTCCAATTTCCGGTCATGAAATATATTCTGTCGGCAAGAGCCAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTTTTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCGGTTGTAAATCCATCGCTGGTTCCTAGCAATATAAAAAATTCCAGCCTGCTTTGTTTTGTATCTGGCCATATCATAGTGCTTGTATTCATTTATCCTTTGGTAGTTTTCCTTCTCGTAATATTTCAGTTCTTTTGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[GGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATCTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACTCTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTGTTTATGAGACAATGTTTGTTTGGAACGAGTTTCTGTCTCGAGCTATCCGGAACCATCTCAAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAGCTCTCAGTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTTGCTGGAACCAGATTCTTGAAAAGAGGTGTT]
[+] EMBL CB635355 [GGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATCTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACTCTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTGTTTATGAGACAATGTTTGTTTGGAACGAGTTTCTGTCTCGAGCTATCCGGAACCATCTCAAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAGCTCTCAGTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTTGCTGGAACCAGATTCTTGAAAAGAGGTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9437#0 TAGCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCG 60
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 TCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCT 120
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 CCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTAC 180
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 GATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCG 240
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 TCTTGTTGCTGCTGACGAGCCCGCTGATTTTGGCTCGATTTAATCCCATTTTACGGGTGT 300
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 TTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGG 360
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 ATCGATTTCGATCTGTCTGAGTGGTTCTCTGGGCGTTGTTGGTGCGTTCTTGATCCGAGA 420
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTC 480
consensus_9437#1 ------------------------------------------------------------
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 TATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTT 540
consensus_9437#1 -----------------------------------------------CCAAATTTTTCTT 13
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 CTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGC 600
consensus_9437#1 ATCGGAGAGGGCCAAGCCAAGTCTTTATGGAGGGTGCTGAAGATTT-ACAGGATGCAGCC 72
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 TATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTA 660
consensus_9437#1 TAC--TAAGCTGGAAATCTCGGAAGATCCTCCCAGTTTCCCAGA---GAATGAA------ 121
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 TCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGA 720
consensus_9437#1 ---TGCCAAGAACTCCTGTGTC-GAATTCTTTAGGGGAATAGATTGATTGGTGGCGTGAA 177
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 GCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATG-AATGCCAAG 779
consensus_9437#1 ATTCGTC---CCGAAATGCTATGGAATAGTTGGTAATGAACCAGGAAATGCGATACCATA 234
consensus_9437#2 ------------------------------------------------------------
consensus_9437#0 AACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGA 839
consensus_9437#1 GTTTATTGATCAAACTTCCTGGTAGTTCAAAACT--TCAAATTATAGCATTTCCTCCCTC 292
consensus_9437#2 ---------GGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGA 51
* *** ** * * * * * * * ** ** *
consensus_9437#0 AATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTA 899
consensus_9437#1 TTTGCTTT----TCTCAGGTTTTATAAAATTTCTTGGCCCTTATTCCATGGTTTTAATTA 348
consensus_9437#2 AATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTA 111
**** * * **************************** ******* ******
consensus_9437#0 CCAGAAGAAAGAA-GNTGGTACAATTTGCGGTCATGAAATATATTCTGTCGGCAAGAGCG 958
consensus_9437#1 CCAGAAAAAGGAAAGTTGGTCCAATTTCCGGTCATGAAATATATTCTGTCGGCAAGAGCC 408
consensus_9437#2 CCAGAAGAAGGAAAGTTGGTACAATCTGCGGTCATGAAATATATTCTGTCGGCAAGAGCG 171
****** ** *** * **** **** * *******************************
consensus_9437#0 AATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGA 1018
consensus_9437#1 AATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTTTTCTAGGGATGAGA 468
consensus_9437#2 AATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGA 231
********************************************* **************
consensus_9437#0 ACAGGT----------CTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCTG----- 1063
consensus_9437#1 ACAGGT----------CTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCGG----- 513
consensus_9437#2 ACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACT 291
**** * * ** * ** ** * * * * * *** * *
consensus_9437#0 -TTGTAAATCCAT-CGCTGGTTCCT-AGCAATATGA------AAGATGCCAGCTTGCTTT 1114
consensus_9437#1 -TTGTAAATCCAT-CGCTGGTTCCT-AGCAATATAA------AAAATTCCAGCCTGCTTT 564
consensus_9437#2 CTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTG 351
** ** *** *** * * * * ** ** * * ** * * **
consensus_9437#0 GTTTTG------TATCTGGACATATCATAGTGCTTGTATTCATTTATCC--------TTT 1160
consensus_9437#1 GTTTTG------TATCTGGCCATATCATAGTGCTTGTATTCATTTATCC--------TTT 610
consensus_9437#2 TTTATGAGACAATGTTTGTTTGGAACG-AGTTTCTGTCTCGAGCTATCCGGAACCATCTC 410
** ** * * ** * * *** *** * * ***** *
consensus_9437#0 TGTAGTTTTCCTTCTCGTAATATTTCAGTTCATTTGTTTGCTACATTGTGATGAGACAAT 1220
consensus_9437#1 GGTAGTTTTCCTTCTCGTAATATTTCAGTTCTTTTGTTTGTTAAAAAAAAAAAAAAAAAA 670
consensus_9437#2 AAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAGCTCTCA 470
* * * * * * * * * * * *** ** * *
consensus_9437#0 GTGCACTATTGGCGCCAAAGTGTCCTTGATTTAAAAAAAAAAAAAAAAA----------- 1269
consensus_9437#1 AAAAAA------------------------------------------------------ 676
consensus_9437#2 GTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTTGCTGGA 530
consensus_9437#0 ------------------------
consensus_9437#1 ------------------------
consensus_9437#2 ACCAGATTCTTGAAAAGAGGTGTT 554
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||