These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1269 fasta sequence [TAGCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGC-TGC-TGACGAGCCCGC-TGATTTTGGC-TCGATTTAATCCCATTTTAC-GGGTGTTTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGGAT-CGATTTCGATCTGTCTGA-GTGGTTCTCTGGGCG-TTGTTGGTGC-GTTCTTGATCCGAGA-GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAAG-AAGNTGGTACAATTTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCTGTTGTAAATCCATCGCTGGTTCCTAGCAATATGAAAGATGCCAGCTTGCTTTGTTTTGTATCTGGACATATCATAGTGCTTGTATTCATTTATCCTTTTGTAGTTTTCCTTCTCGTAATATTTCAGTTCATTTGTTTGCTACATTGTGATGAGACAATGTGCACTATTGGCGCCAAAGTGTCCTTGATTTAAAAAAAAAAAAAAAAA] [+] EMBL AU064252 [TAGCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGCTTGCTTGACGAGCCCGCTTGATTTTGGCTTCGATTTAATCCCATTTTACGGGGTGTTTTGNATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGGNATCTTGGGGGGAATTGGATCCGATTTCGATCTGTCTGAGGTGGTTCTCTGGGCGTTTGTTGGTGCGGTTCTTGATCCCAGAGGGTAAGAGgaatt ] [+] EMBL CB635371 [ GCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCGTCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGC TGC TGACGAGCCCGC TGATTTTGGC TCGATTTAATCCCATTTTAC GGGTGTTTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGGAT CGATTTCGATCTGTCTGA GTGGTTCTCTGGGCG TTGTTGGTGC GTTCTTGATCCGAGA GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGT ] [+] EMBL CB633425 [ TCCTCCTTCCTCGCATCCTCTCCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTACGATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCGTCTTGTTGC TGC TGACGAGCCCGC TGATTTTGGC TCGATTTAATCCCATTTTAC GGGTGTTTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGGAT CGATTTCGATCTGTCTGA GTGGTTCTCTGGGCG TTGTTGGTGC GTTCTTGATCCGAGA GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTCTATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTTCTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAAG AAGNTGGTACAA ] [-] EMBL CA759127 [ TGCTGATCTGATCTGATGGAGGCTATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTATCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGAGCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATGAATGCCAAGAACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATTTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCTGTTGTAAATCCATCGCTGGTTCCTAGCAATATGAAAGATGCCAGCTTGCTTTGTTTTGTATCTGGACATATCATAGTGCTTGTATTCATTTATCCTTTTGTAGTTTTCCTTCTCGTAATATTTCAGTTCATTTGTTTGCTACATTGTGATGAGACAATGTGCACTATTGGCGCCAAAGTGTCCTTGATTTAAAAAAAAAAAAAAAAA] consensusID : consensus_9437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCAAATTTTTCTTATCGGAGAGGGCCAAGCCAAGTCTTTATGGAGGGTGCTGAAGATTTACAGGATGCAGCCTACTAAGCTGGAAATCTCGGAAGATCCTCCCAGTTTCCCAGAGAATGAATGCCAAGAACTCCTGTGTCGAATTCTTTAGGGGAATAGATTGATTGGTGGCGTGAAATTCGTCCCGAAATGCTATGGAATAGTTGGTAATGAACCAGGAAATGCGATACCATAGTTTATTGATCAAACTTCCTGGTAGTTCAAAACTTCAAATTATAGCATTTCCTCCCTCTTTGCTTTTCTCAGGTTTTATAAAATTTCTTGGCCCTTATTCCATGGTTTTAATTACCAGAAAAAGGAAAGTTGGTCCAATTTCCGGTCATGAAATATATTCTGTCGGCAAGAGCCAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTTTTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCGGTTGTAAATCCATCGCTGGTTCCTAGCAATATAAAAAATTCCAGCCTGCTTTGTTTTGTATCTGGCCATATCATAGTGCTTGTATTCATTTATCCTTTGGTAGTTTTCCTTCTCGTAATATTTCAGTTCTTTTGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759126 [CCAAATTTTTCTTATCGGAGAGGGCCAAGCCAAGTCTTTATGGAGGGTGCTGAAGATTTACAGGATGCAGCCTACTAAGCTGGAAATCTCGGAAGATCCTCCCAGTTTCCCAGAGAATGAATGCCAAGAACTCCTGTGTCGAATTCTTTAGGGGAATAGATTGATTGGTGGCGTGAAATTCGTCCCGAAATGCTATGGAATAGTTGGTAATGAACCAGGAAATGCGATACCATAGTTTATTGATCAAACTTCCTGGTAGTTCAAAACTTCAAATTATAGCATTTCCTCCCTCTTTGCTTTTCTCAGGTTTTATAAAATTTCTTGGCCCTTATTCCATGGTTTTAATTACCAGAAAAAGGAAAGTTGGTCCAATTTCCGGTCATGAAATATATTCTGTCGGCAAGAGCCAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTTTTCTAGGGATGAGAACAGGTCTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCGGTTGTAAATCCATCGCTGGTTCCTAGCAATATAAAAAATTCCAGCCTGCTTTGTTTTGTATCTGGCCATATCATAGTGCTTGTATTCATTTATCCTTTGGTAGTTTTCCTTCTCGTAATATTTCAGTTCTTTTGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [GGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATCTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACTCTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTGTTTATGAGACAATGTTTGTTTGGAACGAGTTTCTGTCTCGAGCTATCCGGAACCATCTCAAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAGCTCTCAGTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTTGCTGGAACCAGATTCTTGAAAAGAGGTGTT] [+] EMBL CB635355 [GGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGAAATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTACCAGAAGAAGGAAAGTTGGTACAATCTGCGGTCATGAAATATATTCTGTCGGCAAGAGCGAATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGAACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACTCTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTGTTTATGAGACAATGTTTGTTTGGAACGAGTTTCTGTCTCGAGCTATCCGGAACCATCTCAAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAGCTCTCAGTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTTGCTGGAACCAGATTCTTGAAAAGAGGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9437#0 TAGCCCCCTTCCACTCTCGCGTTTTCTCCCCTTCTCTGCGTGTTTTTGTGGACGACGGCG 60 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 TCGTCGCAAGCTTCTTGTGGCCATCGTCTTCCCCCCCTCTCCTCCTTCCTCGCATCCTCT 120 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 CCTCCCTATCTCTCACAAAAATCCATTCTTGCACAGGGAATTTTGCCTACTCCTATTTAC 180 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 GATCCTTCTCTTCCCCCCTCTGGGCGGCCAAAGCTCTCGTTTTTACGCGTGATTTCGTCG 240 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 TCTTGTTGCTGCTGACGAGCCCGCTGATTTTGGCTCGATTTAATCCCATTTTACGGGTGT 300 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 TTTGCATCTATTGGAGATCCAAAGGTGCGCCCTTTCTGGGGTTATCTTGGGGGGAATTGG 360 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 ATCGATTTCGATCTGTCTGAGTGGTTCTCTGGGCGTTGTTGGTGCGTTCTTGATCCGAGA 420 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 GGTGAGAGATTTGGTTGGATTTTCTCCCTGGAGCATTTGGTGTGCTCGAGCAGGATGCTC 480 consensus_9437#1 ------------------------------------------------------------ consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 TATTTGAAGCAGCCGACGAGGAGCTGAACTACGCGGAGTTGTTTTTCCCCTCTGAATTTT 540 consensus_9437#1 -----------------------------------------------CCAAATTTTTCTT 13 consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 CTTGGTTTGGATTTCGCGGTGGTCGTGTGGTTTGCTTTGCTGATCTGATCTGATGGAGGC 600 consensus_9437#1 ATCGGAGAGGGCCAAGCCAAGTCTTTATGGAGGGTGCTGAAGATTT-ACAGGATGCAGCC 72 consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 TATGGCGAGCGACAAATTCCTTCAGAAGTTCCGGCTCTACGAGACCAGATCGAAATTTTA 660 consensus_9437#1 TAC--TAAGCTGGAAATCTCGGAAGATCCTCCCAGTTTCCCAGA---GAATGAA------ 121 consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 TCTTATCGGAAGGGACAAGACAAGGACTCTATGGAGGGTGCTGAAGATTGACAGGATGGA 720 consensus_9437#1 ---TGCCAAGAACTCCTGTGTC-GAATTCTTTAGGGGAATAGATTGATTGGTGGCGTGAA 177 consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 GCCTACTGAGCTGGAAATCGAGGAAGATCATACAAGTTACACAGAGAATG-AATGCCAAG 779 consensus_9437#1 ATTCGTC---CCGAAATGCTATGGAATAGTTGGTAATGAACCAGGAAATGCGATACCATA 234 consensus_9437#2 ------------------------------------------------------------ consensus_9437#0 AACTGCTGTGGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGA 839 consensus_9437#1 GTTTATTGATCAAACTTCCTGGTAGTTCAAAACT--TCAAATTATAGCATTTCCTCCCTC 292 consensus_9437#2 ---------GGCGAATTCATGAGGGGAATAGATTGACTGGTGGACTGAAATTTGTCACGA 51 * *** ** * * * * * * * ** ** * consensus_9437#0 AATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTA 899 consensus_9437#1 TTTGCTTT----TCTCAGGTTTTATAAAATTTCTTGGCCCTTATTCCATGGTTTTAATTA 348 consensus_9437#2 AATGCTATGGAATAGTTGGTTTTATAAAATTTCTTGGCCCTTATTACATGGTTCTAATTA 111 **** * * **************************** ******* ****** consensus_9437#0 CCAGAAGAAAGAA-GNTGGTACAATTTGCGGTCATGAAATATATTCTGTCGGCAAGAGCG 958 consensus_9437#1 CCAGAAAAAGGAAAGTTGGTCCAATTTCCGGTCATGAAATATATTCTGTCGGCAAGAGCC 408 consensus_9437#2 CCAGAAGAAGGAAAGTTGGTACAATCTGCGGTCATGAAATATATTCTGTCGGCAAGAGCG 171 ****** ** *** * **** **** * ******************************* consensus_9437#0 AATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGA 1018 consensus_9437#1 AATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTTTTCTAGGGATGAGA 468 consensus_9437#2 AATTGATTGCAATTCCAAGTCCTATTGTGTGGCCCAACGTGGCTTATTCTAGGGATGAGA 231 ********************************************* ************** consensus_9437#0 ACAGGT----------CTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCTG----- 1063 consensus_9437#1 ACAGGT----------CTTTCATTTTTTCTATGTGTAAATATTGTGCTTTGCCGG----- 513 consensus_9437#2 ACAGATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACT 291 **** * * ** * ** ** * * * * * *** * * consensus_9437#0 -TTGTAAATCCAT-CGCTGGTTCCT-AGCAATATGA------AAGATGCCAGCTTGCTTT 1114 consensus_9437#1 -TTGTAAATCCAT-CGCTGGTTCCT-AGCAATATAA------AAAATTCCAGCCTGCTTT 564 consensus_9437#2 CTTACAATATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTG 351 ** ** *** *** * * * * ** ** * * ** * * ** consensus_9437#0 GTTTTG------TATCTGGACATATCATAGTGCTTGTATTCATTTATCC--------TTT 1160 consensus_9437#1 GTTTTG------TATCTGGCCATATCATAGTGCTTGTATTCATTTATCC--------TTT 610 consensus_9437#2 TTTATGAGACAATGTTTGTTTGGAACG-AGTTTCTGTCTCGAGCTATCCGGAACCATCTC 410 ** ** * * ** * * *** *** * * ***** * consensus_9437#0 TGTAGTTTTCCTTCTCGTAATATTTCAGTTCATTTGTTTGCTACATTGTGATGAGACAAT 1220 consensus_9437#1 GGTAGTTTTCCTTCTCGTAATATTTCAGTTCTTTTGTTTGTTAAAAAAAAAAAAAAAAAA 670 consensus_9437#2 AAGAATACAACGTGGACTGTTGCCTTAATCCATGGATTTTTTAAACAGTCAAAGCTCTCA 470 * * * * * * * * * * * *** ** * * consensus_9437#0 GTGCACTATTGGCGCCAAAGTGTCCTTGATTTAAAAAAAAAAAAAAAAA----------- 1269 consensus_9437#1 AAAAAA------------------------------------------------------ 676 consensus_9437#2 GTAGCTGGGAAGGAATTCTGGTTGACACTTATAGCAAGGCGCTCACGTCATTTTGCTGGA 530 consensus_9437#0 ------------------------ consensus_9437#1 ------------------------ consensus_9437#2 ACCAGATTCTTGAAAAGAGGTGTT 554 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||