These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 406 fasta sequence [AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCT-GAGTACACTTCTGAGGCTTCTTTGGTCGT-TTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGATCGATCTCATCTCATCTGCGCTGTCCTGGTGGCTGTGGCTGTCAAAT] [+] EMBL C72835 [AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCNCCATCTGAGCTTGGTTAGGTTGCGTCT GAGTACACTTCTGAGGCTTCTTTGGTCGT TTTGGCCTCGAGCTCCGGTCTTAAACTCTGCCTCGATCGATCGATCTCATCTCATCTGCGCTGTCCTGGTGGCTGTGGCTGTCAAAT] [+] EMBL CA758464 [ CACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGC ] [+] EMBL AU065202 [ ATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTNGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCTNGAGTACACTTCTGAGGCTTCTTTGGTCGTGNTTGGCCTCGA ] [+] EMBL C98469 [ CGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTAANAGTTTGATTGAGGTGTTGTTCCTTTAAGTGCAGCAAGAAGCTGATGATTTTAATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTNCTTCTCCATCTNAGCTTGGTTAGGTTGCGTCT NAGTACACTTCTNAGGCTTCTTTGGTCGT TTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGATCGATCTCATCT ] [+] EMBL OSS11284A [ CTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTAATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCT GAGTACACTTCTGAGGCTTCTTTGGTCGT TTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGATCGATCTCATCT ] consensusID : consensus_9439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [TTGAGTGCAGCAAGAAGCTNATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTAGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTACTTCTCCATCTGAGCTTGGTTAGGATNCGTCTGAGTACACTTCTGAGGCTTCTTTGGTCGTTTTGGCCNCGAGCTCCGATNTTAAACTCNGCCTCNATCGATCGATCTCATCTCATCNGCGCTGTTNTTAGTTGCTGTATGCTGTATCAATTTTGAGAAGGANGGTGCCGATCGAAGTTGAAGCCGATCGGGTTCAGTGAAATTCACTTGCGATTTTTAAGANAATTGTTTGAGTTG] [+] EMBL OSC101711 [TTGAGTGCAGCAAGAAGCTNATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTAGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTACTTCTCCATCTGAGCTTGGTTAGGATNCGTCTGAGTACACTTCTGAGGCTTCTTTGGTCGTTTTGGCCNCGAGCTCCGATNTTAAACTCNGCCTCNATCGATCGATCTCATCTCATCNGCGCTGTTNTTAGTTGCTGTATGCTGTATCAATTTTGAGAAGGANGGTGCCGATCGAAGTTGAAGCCGATCGGGTTCAGTGAAATTCACTTGCGATTTTTAAGANAATTGTTTGAGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9439#0 AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTT 60 consensus_9439#1 ------------------------------------------------------------ consensus_9439#0 CATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTA 120 consensus_9439#1 ------------------------------------------------------------ consensus_9439#0 CCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTG 180 consensus_9439#1 -------------------------------TTGAGTGCAGCAAGAAGCTNATGATTTTG 29 ******************* ********* consensus_9439#0 ATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGC 240 consensus_9439#1 ATGATAGCTTAAGGATCTTGCCAAACTCTAGTGTTGGGAGTAGTTGCTTGCAGATCGAGC 89 ***************************** ****************************** consensus_9439#0 TGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCTGAGTACACTT 300 consensus_9439#1 TGCAAAGGTCCCATTTTACTTCTCCATCTGAGCTTGGTTAGGATNCGTCTGAGTACACTT 149 ***************** ************************ * *************** consensus_9439#0 CTGAGGCTTCTTTGGTCGTTTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGAT 360 consensus_9439#1 CTGAGGCTTCTTTGGTCGTTTTGGCCNCGAGCTCCGATNTTAAACTCNGCCTCNATCGAT 209 ************************** ********* * ******** ***** ****** consensus_9439#0 CGATCTCATCTCATCTGCGCTGTCCT-GGTGGCTGTG-GCTGT--CAAAT---------- 406 consensus_9439#1 CGATCTCATCTCATCNGCGCTGTTNTTAGTTGCTGTATGCTGTATCAATTTTGAGAAGGA 269 *************** ******* * ** ***** ***** *** * consensus_9439#0 ------------------------------------------------------------ consensus_9439#1 NGGTGCCGATCGAAGTTGAAGCCGATCGGGTTCAGTGAAATTCACTTGCGATTTTTAAGA 329 consensus_9439#0 --------------- consensus_9439#1 NAATTGTTTGAGTTG 344 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||