cluster # 9439

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Oryza sativa
cluster # 9439 cluster # 9439 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9439#0 length = 406 sequences # 5

consensus_9439#1 length = 344 sequences # 1

consensusID : consensus_9439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 406
fasta sequence

                              [AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCT-GAGTACACTTCTGAGGCTTCTTTGGTCGT-TTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGATCGATCTCATCTCATCTGCGCTGTCCTGGTGGCTGTGGCTGTCAAAT]

[+] EMBL C72835               [AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCNCCATCTGAGCTTGGTTAGGTTGCGTCT GAGTACACTTCTGAGGCTTCTTTGGTCGT TTTGGCCTCGAGCTCCGGTCTTAAACTCTGCCTCGATCGATCGATCTCATCTCATCTGCGCTGTCCTGGTGGCTGTGGCTGTCAAAT]
[+] EMBL CA758464             [       CACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGC                                                                                                                                                                     ]
[+] EMBL AU065202             [                                                     ATCAGTTCATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTNGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCTNGAGTACACTTCTGAGGCTTCTTTGGTCGTGNTTGGCCTCGA                                                                            ]
[+] EMBL C98469               [                                                                              CGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTACCTTTAANAGTTTGATTGAGGTGTTGTTCCTTTAAGTGCAGCAAGAAGCTGATGATTTTAATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTNCTTCTCCATCTNAGCTTGGTTAGGTTGCGTCT NAGTACACTTCTNAGGCTTCTTTGGTCGT TTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGATCGATCTCATCT                                   ]
[+] EMBL OSS11284A            [                                                                                                            CTTCATCTTCTACCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTAATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCT GAGTACACTTCTGAGGCTTCTTTGGTCGT TTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGATCGATCTCATCT                                   ]




>consensus_9439#0
AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTT
CATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTA
CCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTG
ATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGC
TGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCTGAGTACACTT
CTGAGGCTTCTTTGGTCGTTTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGAT
CGATCTCATCTCATCTGCGCTGTCCTGGTGGCTGTGGCTGTCAAAT

consensusID : consensus_9439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [TTGAGTGCAGCAAGAAGCTNATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTAGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTACTTCTCCATCTGAGCTTGGTTAGGATNCGTCTGAGTACACTTCTGAGGCTTCTTTGGTCGTTTTGGCCNCGAGCTCCGATNTTAAACTCNGCCTCNATCGATCGATCTCATCTCATCNGCGCTGTTNTTAGTTGCTGTATGCTGTATCAATTTTGAGAAGGANGGTGCCGATCGAAGTTGAAGCCGATCGGGTTCAGTGAAATTCACTTGCGATTTTTAAGANAATTGTTTGAGTTG]

[+] EMBL OSC101711            [TTGAGTGCAGCAAGAAGCTNATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTAGTGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTACTTCTCCATCTGAGCTTGGTTAGGATNCGTCTGAGTACACTTCTGAGGCTTCTTTGGTCGTTTTGGCCNCGAGCTCCGATNTTAAACTCNGCCTCNATCGATCGATCTCATCTCATCNGCGCTGTTNTTAGTTGCTGTATGCTGTATCAATTTTGAGAAGGANGGTGCCGATCGAAGTTGAAGCCGATCGGGTTCAGTGAAATTCACTTGCGATTTTTAAGANAATTGTTTGAGTTG]




>consensus_9439#1
TTGAGTGCAGCAAGAAGCTNATGATTTTGATGATAGCTTAAGGATCTTGCCAAACTCTAG
TGTTGGGAGTAGTTGCTTGCAGATCGAGCTGCAAAGGTCCCATTTTACTTCTCCATCTGA
GCTTGGTTAGGATNCGTCTGAGTACACTTCTGAGGCTTCTTTGGTCGTTTTGGCCNCGAG
CTCCGATNTTAAACTCNGCCTCNATCGATCGATCTCATCTCATCNGCGCTGTTNTTAGTT
GCTGTATGCTGTATCAATTTTGAGAAGGANGGTGCCGATCGAAGTTGAAGCCGATCGGGT
TCAGTGAAATTCACTTGCGATTTTTAAGANAATTGTTTGAGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9439#0      AGATCGCCACCCTCCCAACCTCCCCATTGTGCTACTATATGCTTATTAGTATCATCAGTT 60
consensus_9439#1      ------------------------------------------------------------
                                                                                  

consensus_9439#0      CATCACCAACCTCTCTCTCGTCTTCTTCTCCCTCTTCTTCTTCTTCTTCTTCATCTTCTA 120
consensus_9439#1      ------------------------------------------------------------
                                                                                  

consensus_9439#0      CCTTTGATAGTTTGATTGAGGTGTTGTTCCTTTGAGTGCAGCAAGAAGCTGATGATTTTG 180
consensus_9439#1      -------------------------------TTGAGTGCAGCAAGAAGCTNATGATTTTG 29
                                                     ******************* *********

consensus_9439#0      ATGATAGCTTAAGGATCTTGCCAAACTCTTGTGTTGGGAGTAGTTGCTTGCAGATCGAGC 240
consensus_9439#1      ATGATAGCTTAAGGATCTTGCCAAACTCTAGTGTTGGGAGTAGTTGCTTGCAGATCGAGC 89
                      ***************************** ******************************

consensus_9439#0      TGCAAAGGTCCCATTTTGCTTCTCCATCTGAGCTTGGTTAGGTTGCGTCTGAGTACACTT 300
consensus_9439#1      TGCAAAGGTCCCATTTTACTTCTCCATCTGAGCTTGGTTAGGATNCGTCTGAGTACACTT 149
                      ***************** ************************ * ***************

consensus_9439#0      CTGAGGCTTCTTTGGTCGTTTTGGCCTCGAGCTCCGTTCTTAAACTCTGCCTCGATCGAT 360
consensus_9439#1      CTGAGGCTTCTTTGGTCGTTTTGGCCNCGAGCTCCGATNTTAAACTCNGCCTCNATCGAT 209
                      ************************** ********* * ******** ***** ******

consensus_9439#0      CGATCTCATCTCATCTGCGCTGTCCT-GGTGGCTGTG-GCTGT--CAAAT---------- 406
consensus_9439#1      CGATCTCATCTCATCNGCGCTGTTNTTAGTTGCTGTATGCTGTATCAATTTTGAGAAGGA 269
                      *************** *******  *  ** *****  *****  *** *          

consensus_9439#0      ------------------------------------------------------------
consensus_9439#1      NGGTGCCGATCGAAGTTGAAGCCGATCGGGTTCAGTGAAATTCACTTGCGATTTTTAAGA 329
                                                                                  

consensus_9439#0      ---------------
consensus_9439#1      NAATTGTTTGAGTTG 344