cluster # 944

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Oryza sativa
cluster # 944 cluster # 944 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_944#0 length = 1316 sequences # 1

consensus_944#1 length = 472 sequences # 1

consensusID : consensus_944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1316
fasta sequence

                              [CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTTCATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATAATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAGTGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAAGGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGAGTTTTGTAGAAGACTCAGAAACTAAATCATCTGGAAAGTTTGGATCTTTCTCAGCTCCTAGGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTGATAAATCATGCCCAGAGAATACAGAGGGAGAGGCTAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGTGATGATGCAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCTAAAACACTAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGAATTGTCAATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGTAAGGACTCTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAGCCTGAGGAAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACTGTGAAAGGGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATAAGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAGAGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTTTTATCAAGCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTAATTTTGGAGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTCTTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAATGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTATTTGATCAACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCTATG]

[+] EMBL AK059666             [CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTTCATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATAATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAGTGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAAGGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGAGTTTTGTAGAAGACTCAGAAACTAAATCATCTGGAAAGTTTGGATCTTTCTCAGCTCCTAGGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTGATAAATCATGCCCAGAGAATACAGAGGGAGAGGCTAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGTGATGATGCAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCTAAAACACTAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGAATTGTCAATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGTAAGGACTCTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAGCCTGAGGAAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACTGTGAAAGGGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATAAGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAGAGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTTTTATCAAGCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTAATTTTGGAGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTCTTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAATGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTATTTGATCAACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCTATG]




>consensus_944#0
CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTT
CATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATA
ATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAG
TGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAA
GGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGA
GTTTTGTAGAAGACTCAGAAACTAAATCATCTGGAAAGTTTGGATCTTTCTCAGCTCCTA
GGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTGATAAATCATGCCCAGAGA
ATACAGAGGGAGAGGCTAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGTGATGATG
CAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCTAAAACAC
TAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGAATTGTCA
ATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGTAAGGACT
CTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAGCCTGAGG
AAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACTGTGAAAG
GGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATAAGTCGTA
CACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAGAGCAAGA
AAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTTTTATCAA
GCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTAATTTTGG
AGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTCTTCTCCA
GAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAATGACTAA
GCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTATTTGATC
AACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTTTGGTGTA
AGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCTATG

consensusID : consensus_944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [TTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTTCTTAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTTTGGGGGGGTTTTTAAAATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCTGGGGTTCCCCAATTTAATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAAAAAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGGCCCCCCTTTTCCTCGGGGGTTTTAGGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCCTTTTTGGGGGGTTCCCCAAGGGTTTTTTTTGC]

[+] EMBL CF308816             [TTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTTCTTAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTTTGGGGGGGTTTTTAAAATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCTGGGGTTCCCCAATTTAATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAAAAAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGGCCCCCCTTTTCCTCGGGGGTTTTAGGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCCTTTTTGGGGGGTTCCCCAAGGGTTTTTTTTGC]




>consensus_944#1
TTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCAAAAAA
AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTTCT
TAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTTTGGGGGGGTTTTTAAA
ATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCTGGGGTTCCCCAATTTA
ATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAAAAAAAGGCCCCCCCCA
ATCCCCTTTCCAAAAATTTGGCCCCCCTTTTCCTCGGGGGTTTTAGGGTTTCCCCCTTTA
AAAAAAAAACCCCTTTTCCCTTTTTGGGGGGTTCCCCAAGGGTTTTTTTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_944#0      CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTT 60
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      CATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATA 120
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      ATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAG 180
consensus_944#1      -----------TTTGGTGTA----AGAAGACACCAAATGCTA-ATCCGAAGGCTTTCAAT 44
                                ** * ** *    * **  *  ** *****  **    * * * ** * 

consensus_944#0      TGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAA 240
consensus_944#1      TGAGCTACCCAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 104
                     ***  *  ***   *   * *  ** *  *    *    ***     *  ****    **

consensus_944#0      GGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGA 300
consensus_944#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC 164
                       **  * *     ** *      *    *           * * * ** * ** *    

consensus_944#0      GTTTTGTAGAAGA-CTCAGAAACTAAATCATCTGGAAAGTTTGGATCTT-TCTCAGCTCC 358
consensus_944#1      TTTTTTTCCCTTTTCTTAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTT 224
                      **** *       ** * ***       **   *     *   **    *  *  **  

consensus_944#0      TAGGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTG--ATAAATCATGCCCA 416
consensus_944#1      TGGGGGGGTTTTTAAAATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCT 284
                     * **         *  * *   **   **** ** ** *   **  **     *  *** 

consensus_944#0      GAGAATACAGAGGGAGAGGC---TAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGT 473
consensus_944#1      GGGGTTCCCCAATTTAATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAA 344
                     * *  * *  *     *  *   *  * ******  * *     ***  *    * *   

consensus_944#0      GATGATGCAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCT 533
consensus_944#1      AAAAAGGCCCCCCCCAATCCCCTTTCCAAAA-ATTTGGCCCCCCTTTTCCTCGGGGGTTT 403
                      *  * **  ** * *   **  *  * **  ****  * ** *   *   *    *  *

consensus_944#0      AAAACACTAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGA 593
consensus_944#1      TAGGGTTT----CCCCCTTTAAA---AAAAAAACCCCTTTTCCCTTT-----TTGGGGGG 451
                      *     *    *    **   *   *   *** *** *    ** *     ***   * 

consensus_944#0      ATTGTCAATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGT 653
consensus_944#1      TTCCCCAAGGGTTTTTTTTGC--------------------------------------- 472
                      *   *** ****    *                                          

consensus_944#0      AAGGACTCTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAG 713
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      CCTGAGGAAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACT 773
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      GTGAAAGGGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATA 833
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      AGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAG 893
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      AGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTT 953
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      TTATCAAGCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTA 1013
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      ATTTTGGAGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTC 1073
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      TTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAA 1133
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      TGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTA 1193
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      TTTGATCAACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTT 1253
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      TGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCT 1313
consensus_944#1      ------------------------------------------------------------
                                                                                 

consensus_944#0      ATG 1316
consensus_944#1      ---