cluster # 9442

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Oryza sativa
cluster # 9442 cluster # 9442 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9442#0 length = 628 sequences # 2

consensus_9442#1 length = 598 sequences # 3
consensus_9442#2 length = 360 sequences # 1

consensusID : consensus_9442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [CAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCTGGTTGCAAACGTGTTAGTATGTACTNCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGGGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL OSS15824A            [CAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCTGGTTGCAAACGTGTTAGTATGTACTNCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGGGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTA                                                                                                                                                             ]
[+] EMBL CA754918             [                                AGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCTGGTTGCANACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCANATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_9442#0
CAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCG
GATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCT
CTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGT
CTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGC
ATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCA
GCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCT
GGTTGCAAACGTGTTAGTATGTACTNCACTCTGTAAGTTCGTTCCGATTTCAAATGTAAT
AATGCAAATTTAGGGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAG
TATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_9442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 598
fasta sequence

                              [GTGCAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCTGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATAAAAAA]

[+] EMBL AK062445             [GTGCAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCTGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCTAGACTTGATTAATTATATGTAAAAA                                     ]
[+] EMBL AU065944             [   CAGATCGTTTGANCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTCCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTCGCCGCCGATTCTNCCGGACGG AACCGGCCACCGAAGTCGCCTNCAGCTCCCGCATCNGGACAAC                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU198189             [                                                                                                                                                                         CCGATAGCCGGCGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATACTCTGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATAAAAAA]




>consensus_9442#1
GTGCAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGG
CCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGC
GCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGG
CGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCC
CGCATCCGCACAACACATGAACCGCTCCTTTCAGCCGGGCTGCCCGCCGGATTGCACCGA
CCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTCAGCATATATAC
TCTGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGT
AATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTAC
TAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCTAGAC
TTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATAAAAAA

consensusID : consensus_9442#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [GTCCNGGGGGCCCCTGTCCCGGGATTCTGTCACCCGGATCCCTCATGNCAATACCGTNTTCCAAGCCTTAAANTTAGGTTATGGGACCTATTCCAAACGACGTACGGTTCCAGCATTATATACTCTGGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATAAAA]

[+] EMBL AU162070             [GTCCNGGGGGCCCCTGTCCCGGGATTCTGTCACCCGGATCCCTCATGNCAATACCGTNTTCCAAGCCTTAAANTTAGGTTATGGGACCTATTCCAAACGACGTACGGTTCCAGCATTATATACTCTGGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATAAAA]




>consensus_9442#2
GTCCNGGGGGCCCCTGTCCCGGGATTCTGTCACCCGGATCCCTCATGNCAATACCGTNTT
CCAAGCCTTAAANTTAGGTTATGGGACCTATTCCAAACGACGTACGGTTCCAGCATTATA
TACTCTGGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAA
ATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATT
TTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATATCCT
AGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9442#1      GTGCAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGG 60
consensus_9442#2      ------------------------------------------------------------
consensus_9442#0      ---CAGATCGTTTGAGCAGCTAGCAACAAATTACAAGAGGGTGGCAGCTAGCTAGTTAGG 57
                                                                                  

consensus_9442#1      CCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGC 120
consensus_9442#2      ------------------------------------------------------------
consensus_9442#0      CCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAGCTCGCCGTGGC 117
                                                                                  

consensus_9442#1      GCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGG 180
consensus_9442#2      ------------------------------------------------------------
consensus_9442#0      GCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGG 177
                                                                                  

consensus_9442#1      CGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCC 240
consensus_9442#2      ------------------------------------------------------------
consensus_9442#0      CGTCTCGTCGCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCC 237
                                                                                  

consensus_9442#1      CGCATCCGCACAACACATGAACCGC--TCCTTTCAGCCGGGCTGCCCGCCGGATTGCACC 298
consensus_9442#2      ---GTCCNGGGGGCCCCTGTCCCGGGATTCTGTCACCCGGATCCCTCATGNCAATACCGT 57
consensus_9442#0      CGCATCCGCACAACACATGAACCGC--TCCTTTCAGCCGGGCTGCCCGCCGGATTGCACC 295
                          ***      * * **  ***   * ** *** ****    * *     * * *   

consensus_9442#1      GACCAGCAACGTCAGCCTTAATTA-GTTATGGACTATCAACGACGTACG--TTCAGCAT- 354
consensus_9442#2      NTTCCAAGCCTTAAANTTAGGTTATGGGACCTATTCCAAACGACGTACGGTTCCAGCATT 117
consensus_9442#0      GACCAGCAACGTCAGCCTTAATTA-GTTATGGACTATCAACGACGTACG--TTCAGCAT- 351
                         *     * * *   *   *** *  *   * *   ***********  * ****** 

consensus_9442#1      ATATACTCTGG-TTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTT 413
consensus_9442#2      ATATACTCTGGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTT 177
consensus_9442#0      ATATACTCTGG-TTGCAAACGTGTTAGTATGTACTNCACTCTGTAAGTTCGTTCCGATTT 410
                      *********** *********************** ************************

consensus_9442#1      CAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCT 473
consensus_9442#2      CAAATGTAATAATGCAAATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCT 237
consensus_9442#0      CAAATGTAATAATGCAAATTTAGGGCATTGTATTCTCAACTACTTGTAAGTATAATTTCT 470
                      *********************** ************************************

consensus_9442#1      ATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATAT 533
consensus_9442#2      ATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCAAAAACAATAT 297
consensus_9442#0      ATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGATTGGTACATCTTCNNNNNNNNNNN 530
                      *************************************************           

consensus_9442#1      CCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATA 593
consensus_9442#2      CCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTTCATA 357
consensus_9442#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 590
                                                                                  

consensus_9442#1      AAAAA--------------------------------- 598
consensus_9442#2      AAA----------------------------------- 360
consensus_9442#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 628