These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAAATAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGGGGCCCTTTTTACCCCTTCAACCCCTGGCAGGGGCCCCGGGCCCCAATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAACCCCTTTAAGGGGGGGTAATTTTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGGGAAAATGGTATCCCCCCCCAATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAACCCGGGGGGCCCCATGAGGGGCCCCCCCCCCCTTAATTGGGGTGGCCCCC] [+] EMBL CF329651 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAAATAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGGGGCCCTTTTTACCCCTTCAACCCCTGGCAGGGGCCCCGGGCCCCAATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAACCCCTTTAAGGGGGGGTAATTTTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGGGAAAATGGTATCCCCCCCCAATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAACCCGGGGGGCCCCATGAGGGGCCCCCCCCCCCTTAATTGGGGTGGCCCCC] consensusID : consensus_945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAAACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACCGGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAACCCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAAC] [+] EMBL CF311146 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAAACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACCGGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAACCCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_945#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGA 60 consensus_945#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGA 60 ****************************************************** *** consensus_945#0 AAGGGAAA--------TAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGG- 111 consensus_945#1 AACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACC 120 ** ** * **** * **** ****** * * consensus_945#0 GGCCCTTTTTACCCCTTCAACC---------CCTGGCAGGGGCCCCGGGCCCCA--ATTT 160 consensus_945#1 GGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTT 180 ** * ********* * * * ** ***** ** **** consensus_945#0 TTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAAC 220 consensus_945#1 TTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAAC 240 ********************************* ***** *********** ******** consensus_945#0 CCCTTTAAGGGGGGGTAATTTTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGG 280 consensus_945#1 CCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGG 300 ************************ ************* *********** ********* consensus_945#0 GAAAATGGTATCCCCCCCCAATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAA 340 consensus_945#1 GAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAA 360 ******* * ***** *************** ********* ***** ************ consensus_945#0 CCCGGGGGGCCCCATGAGGGGCCCCCCCCCCCTTAATTGGGGTGGCCCCC 390 consensus_945#1 C------------------------------------------------- 361 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||