cluster # 945

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Oryza sativa
cluster # 945 cluster # 945 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_945#0 length = 390 sequences # 1

consensus_945#1 length = 361 sequences # 1

consensusID : consensus_945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAAATAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGGGGCCCTTTTTACCCCTTCAACCCCTGGCAGGGGCCCCGGGCCCCAATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAACCCCTTTAAGGGGGGGTAATTTTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGGGAAAATGGTATCCCCCCCCAATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAACCCGGGGGGCCCCATGAGGGGCCCCCCCCCCCTTAATTGGGGTGGCCCCC]

[+] EMBL CF329651             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAAATAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGGGGCCCTTTTTACCCCTTCAACCCCTGGCAGGGGCCCCGGGCCCCAATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAACCCCTTTAAGGGGGGGTAATTTTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGGGAAAATGGTATCCCCCCCCAATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAACCCGGGGGGCCCCATGAGGGGCCCCCCCCCCCTTAATTGGGGTGGCCCCC]




>consensus_945#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGA
AAGGGAAATAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGGGGCCCTTTT
TACCCCTTCAACCCCTGGCAGGGGCCCCGGGCCCCAATTTTTACCCCTTCAACCCCTGGC
AGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAACCCCTTTAAGGGGGGGTAATT
TTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGGGAAAATGGTATCCCCCCCCA
ATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAACCCGGGGGGCCCCATGAGGG
GCCCCCCCCCCCTTAATTGGGGTGGCCCCC

consensusID : consensus_945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAAACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACCGGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAACCCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAAC]

[+] EMBL CF311146             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAAACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACCGGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTTTTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAACCCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAAC]




>consensus_945#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGA
AACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACC
GGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTT
TTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAAC
CCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGG
GAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_945#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGA 60
consensus_945#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGA 60
                     ******************************************************   ***

consensus_945#0      AAGGGAAA--------TAAACCGGTTTTTTACCTGGTCCCTTAAAACCCCCACCCCCGG- 111
consensus_945#1      AACGGGGCCCGGCCTTTTAACCCCCCCTCAACCTTAAATTGAAAAACCTTGAAATCAACC 120
                     ** **           * ****     *  ****        ******   *   *    

consensus_945#0      GGCCCTTTTTACCCCTTCAACC---------CCTGGCAGGGGCCCCGGGCCCCA--ATTT 160
consensus_945#1      GGGTTTGTTTACCCCTCCCATTGACAACTTTTTTTGCCTGGGCCTGAAACCGGGGGATTT 180
                     **   * ********* * *             * **  *****     **     ****

consensus_945#0      TTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGCAATTCCTTTAAACCCGCCGGACTAAC 220
consensus_945#1      TTACCCCTTCAACCCCTGGCAGGGGCCAAGGGGGAATTCTTTTAAACCCGCGGGACTAAC 240
                     ********************************* ***** *********** ********

consensus_945#0      CCCTTTAAGGGGGGGTAATTTTGAGCTTGGGGGAAACATGGGCAAAACTGGTTCCCGGGG 280
consensus_945#1      CCCTTTAAGGGGGGGTAATTTTGACCTTGGGGGAAACAGGGGCAAAACTGTTTCCCGGGG 300
                     ************************ ************* *********** *********

consensus_945#0      GAAAATGGTATCCCCCCCCAATTCCCCCCAACATACAAACCCGAAACCTAAAGGGGAAAA 340
consensus_945#1      GAAAATGTTTTCCCCTCCCAATTCCCCCCAAAATACAAACCGGAAACATAAAGGGGAAAA 360
                     ******* * ***** *************** ********* ***** ************

consensus_945#0      CCCGGGGGGCCCCATGAGGGGCCCCCCCCCCCTTAATTGGGGTGGCCCCC 390
consensus_945#1      C------------------------------------------------- 361
                     *