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Oryza sativa
cluster # 9451 cluster # 9451       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9451#0 length = 1225 sequences # 4  
consensus_9451#1 length = 655 sequences # 2  

consensusID : consensus_9451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1225
fasta sequence
                              [TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTTAATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCACAAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACATATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACACTGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACACATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCAATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGGTACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAAGTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTGCTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGG-CTCGAACGCCGGGCGGAAGAACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGCCGTCGCCGCCGTCGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGCGACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGNCGTACGGCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTAGTACGGAGTACCGACGCCGGCGCCGTAGAGGGTGACGCTGCCGGCGTTGTAGCCGCCGTTGTAACCGTAACCACCACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCCGCCGCCGGATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCTGGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTTTAATTTGTGGAGGAGATGACACTTAATT]

[-] EMBL AU068098             [TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTTAATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCACAAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACATATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACACTGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACACATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCAATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGGTACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAAGTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTGCTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGG CTCGAACGCCGGGCGGAAGAACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB645166             [                                                                                                                                                          tcttttaTTTTGCACACAGTGTCACATATATATCTCACACAGCCCATGAATATATACAGAGTACAGTACATGAAACAAACCGACACTGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACACATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCAATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGGTACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAAGTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAA TTAGTCGCTGCTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGGCCTCGAACGCCGGGCGGAAGAACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGCCGCCGCCGTAGCCGTCGCCGCCGTCGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGCGACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGNCGTACGGCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCA                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AK109173             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTGGACCTCGCGAGTGTTGATGTACAGCGGCGACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGCCGTACGGCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTAGTACGGAGTACCGACGCCGGCGCCGTAGAGGGTGACGCTGCCGGCGTTGTAGCCGCCGTTGTAACCGTAACCACCACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCCGCCGCCGGATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCTGGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTTTAATTTGTGGAGGAGATGACACTTAATT]
[-] EMBL CA754802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGCCGCTGGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATNGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTT                            ]


>consensus_9451#0 TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTT AATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCAC AAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACA TATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACAC TGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACAC ATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCA ATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGG TACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAA GTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTG CTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGGCTCGAACGCCGGGCGGAAGA ACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGCCGTCGCCGCCGT CGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGCG ACCTCGCGCCGTTCTGGGGAGTCCAGTACCCGGCCGGCACGCCGCCGCCGCCGNCGTACG GCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTAGTACGGAGTACCGA CGCCGGCGCCGTAGAGGGTGACGCTGCCGGCGTTGTAGCCGCCGTTGTAACCGTAACCAC CACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCCGCCGCCGG ATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCTGGTCTTCT TCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCG CTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGG AGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTTTAA TTTGTGGAGGAGATGACACTTAATT



consensusID : consensus_9451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 655
fasta sequence
                              [GGTCTTCTTCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAATTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGATTTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTGTTCAAGCTTGCATGGATGAACATAATCCGCTAGAACAGTAAAAAGTGAAAAAGAAACATAAAACAAAGTAAAAGGAGGATCATAGATAAGATACCTTTAATTTGTGGAGGAGATG]

[-] EMBL CB662022             [GGTCTTCTTCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAATTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGATTTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTGTTCAAGCT                                                                                                           ]
[-] EMBL CB645165             [                         GGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTAATAAAATTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGATTTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTCTTCAAGCTTGCATGGATGAACATAATCCGCTAGAACAGTAAAAAGTGAAAAAGAAACATAAAACAAAGTAAAAGGAGGATCATAGATAAGATACCTTTAATTTGTGGAGGAGATG]


>consensus_9451#1 GGTCTTCTTCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGC GGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGGT GTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGATCTACCGCTGCTGTTCCACAT ACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAATTGCACGTACATGTCAAGAA TATTCAGAGATTCGATCGTTGCGTTGTTTTATATATAGTATATATATTTGGTGGCTGCAG CTAATACATGTAATTAGTATGTGATATATTGCATTCAGCTGACGGTATACATGAACGGAT TTGCAAACGAATTAAAGAACCAATTATCATATACTCCTATAACGGATACTTCAGATATAT TCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTTAATGAACTGTGTCTGACGAATTT GATTATGTCGATCTGGTTAGCTAGTGGTTGATGGATGAACTGTGCCTGATATGGTAGTTG TTCAAGCTTGCATGGATGAACATAATCCGCTAGAACAGTAAAAAGTGAAAAAGAAACATA AAACAAAGTAAAAGGAGGATCATAGATAAGATACCTTTAATTTGTGGAGGAGATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9451#0      TTTTTTTTTTGGAGTAACTTTTAGTGTATATTTAAATTAGAAGAAATTACACTTGAATTT 60
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      AATTACAAACTGATTAATTACAATATGATGCAATCACACATACATACATTAACTGAGCAC 120
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      AAACATACGTATATATATATACGCATGCCGTACACACATACTTATGCACACAGTGTCACA 180
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      TATATATCTCACACAGTACATGAATATATACAGAGTACAGTACATGAAACAAACCGACAC 240
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      TGCAGTCGGAAAAAAAGAAAGAAAAAATAAATAAAAATAAAGCCAATTAACCACAAACAC 300
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      ATACATACACGTTGCGGCCGTATGCAGATGCAAAGAAGAAATACTTATTAGAAGCGAGCA 360
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      ATTAATAATTACGTATACGCACGTAAATACGGTCGTACGTATACTAGAGCTCGCAGACGG 420
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      TACGTACGTACGTATACTGATAGTCTGATGTACGTATATATGCATGTGATAATAGTACAA 480
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      GTTTCGTGTTAATTACGCGCGTCACCGATTAATTAGTATAATTAATTAATTTAGTCGCTG 540
consensus_9451#1      ------------------------------------------------------------
                                                                                  

consensus_9451#0      CTGTGGAAGCCGAACCTTCTGTCGAAGAAATGGCCGACGGCT-CGAACGCCGGGCGGAAG 599
consensus_9451#1      ------------GGTCTTCT-TCAGCGCGACCGACGGCGGCGGCTGGCGCTTCGCCGACG 47
                                     ***** **   *  *  * ** ****  *   ***   ** ** *

consensus_9451#0      AACCCGCCGCTGCGCCGCCTCTCGCCGCTGCCGCCGNCGNCGCCGTAGCCGTCGCCGCCG 659
consensus_9451#1      T-CTTGTCGCCG-GCGGCGGCCGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCC 105
                        *  * *** * ** **  *       * * ** *  *  ** *  ** *  **** * 

consensus_9451#0      TCGTACGGCCCATGCGGCCCCCCGTACACGTGGACCTCGCGAGTGTTGATGTACAGCGGC 719
consensus_9451#1      TCCT--GATCCGTAGGTGTCAGTGGAGGAATTGGAGTAGCTGCTGCCGCTGAAGGAT--C 161
                      ** *  *  ** *  *   *   * *    * *   * **   **  * ** *      *

consensus_9451#0      GACCTCGCGCCGTTCTGGGGA---GTCCAGTACCCGGCCGG-CACGCCGCCGCCGCCGNC 775
consensus_9451#1      TACCGC-TGCTGTTCCACATACCTATCCAGCGGTCGATCGAACAAATTAAGCTCATCAAA 220
                       *** *  ** ****     *    *****    **  **  **         *  *   

consensus_9451#0      GTACG-GCACGGATCCACCACCGGTGTAACCTCCGCCGCCGCCACCGCCGTA-GTACGGA 833
consensus_9451#1      TTGCACGTACATGTCAAGAATATTCAGAGATTCGATCGTTGC-GTTGTTTTATATATAGT 279
                       * *  * **   ** *  *       *   **   **  **    *   **  **  * 

consensus_9451#0      GTACCGACGCCGGCGCCGTAGAGGGTG-ACGCTGCCGGCGTTGTAGCCGCCGTTGTAACC 892
consensus_9451#1      ATATATATTTGGTGGCTGCAGCTAATACATGTAATTAGTATGTGATATATTGCATTCAGC 339
                       **   *    *  ** * **    *  * *      *  *   *      *   * * *

consensus_9451#0      GTAACCACCACCACCACCGTAGTTAGCGCCGGCGTTGGCCTTGGTGCTGCCGCCGTAGCC 952
consensus_9451#1      -TGACGGTATACATGAACGGA-TTTGCAAACGAATTAAAGAACCAATTATCATATACTCC 397
                       * **      **  * ** * ** **    *  **           *  *       **

consensus_9451#0      GCCGCCGGATGCTGCGTAGCCGACGACGGCGGCGGTGGCGGCGTCGTCGTTCCTGCCGCT 1012
consensus_9451#1      TATAACGGATACTTCAGATATATTCAGAAGTATTCTTGAATTATTGATCAGCTAGAGTTT 457
                           ***** ** *  *       *         * *     * *     *  *    *

consensus_9451#0      GGTCTTCTTCAGGCGCGACGGCGGCGGCGGCTGGCGCTTCGCCGACGTCTTGTCGCCGGC 1072
consensus_9451#1      AATGAACTGT--GTCTGACGAATTTGATTATGTCGATCTGGTTAGCTAGTGGTTGATGGA 515
                        *   **    *   ****     *            * *    *   * ** *  ** 

consensus_9451#0      GGCGGC-CGCTTCATACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTCCTGATCCGTAGG 1131
consensus_9451#1      TGAACTGTGCCTGATATGGTAGTTGTTCAAGCT--TGCATGGATGAACATAATCCGCTAG 573
                       *      ** * ***  *  * ** *   ***  ***     *   * * *****   *

consensus_9451#0      TGTCAGTGGAGGAATTGGAGTAGCTGC-TGCCGCTGAAGGATCTACCGCTGCTGTTCCAC 1190
consensus_9451#1      AA-CAGT--AAAAAGTGAAAAAGAAACATAAAACAAAGTAAAAGGAGGATCATAGATAAG 630
                         ****  *  ** ** *  **   * *    *  *   *      * *  *     * 

consensus_9451#0      ATACCTTTAATTTGTGGAGGAGATGACACTTAATT 1225
consensus_9451#1      ATACCTTTAATTTGTGGAGGAGATG---------- 655
                      *************************          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)