These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 927 fasta sequence [GCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA-CCACGGCGGCTG-CCGCCGT-TGCTGCGCGACCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC-TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATA-TGGACCACGTACGTACGTATGT-ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAGTACTTCTNNTNNNAAAANNANNNAANAANAANNNNAANAAANAAAANNNNAAAAAAAAGAAGAAAAAGAANAANAGAAGGAGGGNAGNAAAAAAAANNANNNAAAAAATGGGGGGGGGGCCGGGCCCCCACCCCCCCTTATAAGAAGGGATTAACCCCCGCCCACTGCGCGCTTTTTAACCACGTGGGAACTGGAAAACCCCCGCGCCCCCCACTTTAAACCCTTTTGAAAAAACCCCCTTTTCCCCCNGTGG] [+] EMBL AK063583 [GCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA CCACGGCGGCTG CCGCCGT TGCTGCGCGACCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATA TGGACCACGTACGTACGTATGT ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAGTAC ] [+] EMBL CA757939 [ AGGATCGATCGACC CCATGGCGTCGTCGTCCAAGGCCCTGCTCGTGCTCGCTCTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA CCACGGCGGCTG CCGCCGT TGCTGCGCGACCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACACATAAAAGTCTGTGCACGTATATGTATATA TGGACCACGTACGTACGTATGT ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACAGGAGTATATGTCAATAAAAACTAGTACTAGTACTTCTNNTNNNAAAANNANNNAANAANAANNNNAANAAANAAAANNNNAAAAAAAAGAAGAAAAAGAANAANAGAAGGAGGGNAGNAAAAAAAANNANNNAAAAAATGGGGGGGGGGCCGGGCCCCCACCCCCCCTTATAAGAAGGGATTAACCCCCGCCCACTGCGCGCTTTTTAACCACGTGGGAACTGGAAAACCCCCGCGCCCCCCACTTTAAACCCTTTTGAAAAAACCCCCTTTTCCCCCNGTGG] [+] EMBL OSC615 [ GAAGAAGACGGAGAGCGGCGGCGGCGCGGGCNTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA CCACGGCGGCTG CCGCCGTNTGCTGCGCGACCGCCGACGATAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTTGAATAATGAAAATGTGTATTCCAGCACGTATATATGTGTACATATAAAAGTCTNTTCACGTATATGTATATATTGGACCACGTACGTACGTATTTAATCTTCGTTCATACGGCGGCGGGTTTTTTNCCGt ] [+] EMBL C99325 [ TACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATACCCACGGC GCTGNCCGCCGT T NTGCGCGACCGCCGACGATAAGCCGGACCCCATGTACCGCCCCGAGGCGCACANCTAATTAAGTCTNAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATA TGGACCACGTACGTACGTATGT ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAGTACTTCTaataaaaa ] consensusID : consensus_9452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [AGCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGCGACCGCCGACGAGAAGCCGGAC-CCCATGT-ACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCG-ACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAG] [+] EMBL AK105378 [AGCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGCGACCGCCGACGAGAAGCCGGAC CCCATGT ACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCG ACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAG] [+] EMBL AU068315 [ ACCGCCGACGAGAAGCCGGNCACCCATGTAACCGCCCCGAGGCGNACAACTAATTAAGTCTCAGACGATCGTCCGNAC TACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATATGGNCCACGTACGTACGTATGTATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9452#0 -GCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAA 59 consensus_9452#1 AGCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAA 60 *********************************************************** consensus_9452#0 AGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGC 119 consensus_9452#1 AGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGC 120 ************************************************************ consensus_9452#0 TCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTC 179 consensus_9452#1 TCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTC 180 ************************************************************ consensus_9452#0 ATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACG 239 consensus_9452#1 ATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACG 240 ************************************************************ consensus_9452#0 ACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGT 299 consensus_9452#1 ACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGT 300 ************************************************************ consensus_9452#0 GCCATCACGGATGCTGCGGCGGCTACGGATACCACGGCGGCTGCCGCCGTTGCTGCGCGA 359 consensus_9452#1 GCCATCACGGATGCTGCG---------------------------------------CGA 321 ****************** *** consensus_9452#0 CCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCA 419 consensus_9452#1 CCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCA 381 ************************************************************ consensus_9452#0 GACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAG 479 consensus_9452#1 GACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAG 441 ************************************************************ consensus_9452#0 CAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGT 539 consensus_9452#1 CAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGT 501 ************************************************************ consensus_9452#0 ACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTG 599 consensus_9452#1 ACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTG 561 ************************************************************ consensus_9452#0 CGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAAT 659 consensus_9452#1 CGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAAT 621 ************************************************************ consensus_9452#0 AAAAACTAGTACTAGTACTTCTNNTNNNAAAANNANNNAANAANAANNNNAANAAANAAA 719 consensus_9452#1 AAAAACTAGTACTAG--------------------------------------------- 636 *************** consensus_9452#0 ANNNNAAAAAAAAGAAGAAAAAGAANAANAGAAGGAGGGNAGNAAAAAAAANNANNNAAA 779 consensus_9452#1 ------------------------------------------------------------ consensus_9452#0 AAATGGGGGGGGGGCCGGGCCCCCACCCCCCCTTATAAGAAGGGATTAACCCCCGCCCAC 839 consensus_9452#1 ------------------------------------------------------------ consensus_9452#0 TGCGCGCTTTTTAACCACGTGGGAACTGGAAAACCCCCGCGCCCCCCACTTTAAACCCTT 899 consensus_9452#1 ------------------------------------------------------------ consensus_9452#0 TTGAAAAAACCCCCTTTTCCCCCNGTGG 927 consensus_9452#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||