|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 927 fasta sequence
[GCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA-CCACGGCGGCTG-CCGCCGT-TGCTGCGCGACCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC-TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATA-TGGACCACGTACGTACGTATGT-ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAGTACTTCTNNTNNNAAAANNANNNAANAANAANNNNAANAAANAAAANNNNAAAAAAAAGAAGAAAAAGAANAANAGAAGGAGGGNAGNAAAAAAAANNANNNAAAAAATGGGGGGGGGGCCGGGCCCCCACCCCCCCTTATAAGAAGGGATTAACCCCCGCCCACTGCGCGCTTTTTAACCACGTGGGAACTGGAAAACCCCCGCGCCCCCCACTTTAAACCCTTTTGAAAAAACCCCCTTTTCCCCCNGTGG]
[+] EMBL AK063583 [GCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA CCACGGCGGCTG CCGCCGT TGCTGCGCGACCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATA TGGACCACGTACGTACGTATGT ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAGTAC ]
[+] EMBL CA757939 [ AGGATCGATCGACC CCATGGCGTCGTCGTCCAAGGCCCTGCTCGTGCTCGCTCTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA CCACGGCGGCTG CCGCCGT TGCTGCGCGACCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACACATAAAAGTCTGTGCACGTATATGTATATA TGGACCACGTACGTACGTATGT ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACAGGAGTATATGTCAATAAAAACTAGTACTAGTACTTCTNNTNNNAAAANNANNNAANAANAANNNNAANAAANAAAANNNNAAAAAAAAGAAGAAAAAGAANAANAGAAGGAGGGNAGNAAAAAAAANNANNNAAAAAATGGGGGGGGGGCCGGGCCCCCACCCCCCCTTATAAGAAGGGATTAACCCCCGCCCACTGCGCGCTTTTTAACCACGTGGGAACTGGAAAACCCCCGCGCCCCCCACTTTAAACCCTTTTGAAAAAACCCCCTTTTCCCCCNGTGG]
[+] EMBL OSC615 [ GAAGAAGACGGAGAGCGGCGGCGGCGCGGGCNTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATA CCACGGCGGCTG CCGCCGTNTGCTGCGCGACCGCCGACGATAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTTGAATAATGAAAATGTGTATTCCAGCACGTATATATGTGTACATATAAAAGTCTNTTCACGTATATGTATATATTGGACCACGTACGTACGTATTTAATCTTCGTTCATACGGCGGCGGGTTTTTTNCCGt ]
[+] EMBL C99325 [ TACCCCGGTGGGCAGTGCCATCACGGATGCTGCGGCGGCTACGGATACCCACGGC GCTGNCCGCCGT T NTGCGCGACCGCCGACGATAAGCCGGACCCCATGTACCGCCCCGAGGCGCACANCTAATTAAGTCTNAGACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATAC TGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATA TGGACCACGTACGTACGTATGT ATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAGTACTTCTaataaaaa ]
consensusID : consensus_9452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[AGCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGCGACCGCCGACGAGAAGCCGGAC-CCCATGT-ACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCG-ACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAG]
[+] EMBL AK105378 [AGCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAAAGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGCTCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTCATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACGACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGTGCCATCACGGATGCTGCGCGACCGCCGACGAGAAGCCGGAC CCCATGT ACCGCCCCGAGGCGCACAACTAATTAAGTCTCAGACGATCGTCCG ACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAATAAAAACTAGTACTAG]
[+] EMBL AU068315 [ ACCGCCGACGAGAAGCCGGNCACCCATGTAACCGCCCCGAGGCGNACAACTAATTAAGTCTCAGACGATCGTCCGNAC TACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAGCAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGTACATATAAAAGTCTGTGCACGTATATGTATATATGGNCCACGTACGTACGTATGTATCTGCGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9452#0 -GCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAA 59
consensus_9452#1 AGCTAGCTAGCTAGCTTTTGCTCCTACATCTTCACTTCAGTACCACACCGGCTTAGCAAA 60
***********************************************************
consensus_9452#0 AGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGC 119
consensus_9452#1 AGCCAGCTGCAAGCTAGTAGGATCGATCGACCACCATGGCGTCGTCGTCCAAGGCCCTGC 120
************************************************************
consensus_9452#0 TCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTC 179
consensus_9452#1 TCTTGCTCGCTGTCCTCCTCGCATCCGCCGTCCTCCTCGCCGCCGCCGCCGACCAACCTC 180
************************************************************
consensus_9452#0 ATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACG 239
consensus_9452#1 ATGGCAAGGAGCAGAAGAAGACGGAGAGCGGCGGCGGCGCGGGCGTCCAGGACTGGCACG 240
************************************************************
consensus_9452#0 ACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGT 299
consensus_9452#1 ACGACCACGGTGGGGGCGGCCATCACGGAGGTGGCGGCGGCGGCTACCCCGGTGGGCAGT 300
************************************************************
consensus_9452#0 GCCATCACGGATGCTGCGGCGGCTACGGATACCACGGCGGCTGCCGCCGTTGCTGCGCGA 359
consensus_9452#1 GCCATCACGGATGCTGCG---------------------------------------CGA 321
****************** ***
consensus_9452#0 CCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCA 419
consensus_9452#1 CCGCCGACGAGAAGCCGGACCCCATGTACCGCCCCGAGGCGCACAACTAATTAAGTCTCA 381
************************************************************
consensus_9452#0 GACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAG 479
consensus_9452#1 GACGATCGTCCGACGTACGTACGTACGGCCGGCGCCGGAGCTCGCTAGCAACGTACGCAG 441
************************************************************
consensus_9452#0 CAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGT 539
consensus_9452#1 CAACTAAACCAAGTGAATACTGAATAATGAAAATGTGTATGCCAGCACGTATATATGTGT 501
************************************************************
consensus_9452#0 ACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTG 599
consensus_9452#1 ACATATAAAAGTCTGTGCACGTATATGTATATATGGACCACGTACGTACGTATGTATCTG 561
************************************************************
consensus_9452#0 CGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAAT 659
consensus_9452#1 CGTGCATACGGCGGCGGGGTTTGTGCCGATATATGTTACTATACATGAGTATATGTCAAT 621
************************************************************
consensus_9452#0 AAAAACTAGTACTAGTACTTCTNNTNNNAAAANNANNNAANAANAANNNNAANAAANAAA 719
consensus_9452#1 AAAAACTAGTACTAG--------------------------------------------- 636
***************
consensus_9452#0 ANNNNAAAAAAAAGAAGAAAAAGAANAANAGAAGGAGGGNAGNAAAAAAAANNANNNAAA 779
consensus_9452#1 ------------------------------------------------------------
consensus_9452#0 AAATGGGGGGGGGGCCGGGCCCCCACCCCCCCTTATAAGAAGGGATTAACCCCCGCCCAC 839
consensus_9452#1 ------------------------------------------------------------
consensus_9452#0 TGCGCGCTTTTTAACCACGTGGGAACTGGAAAACCCCCGCGCCCCCCACTTTAAACCCTT 899
consensus_9452#1 ------------------------------------------------------------
consensus_9452#0 TTGAAAAAACCCCCTTTTCCCCCNGTGG 927
consensus_9452#1 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||