These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1571 fasta sequence [ATCCCAACCCTCGTTCCATTCCATCCCACCCCCCCGCCACTACCATCCAAGGGCGCGCCGAGGCGCCATGGACGACGACATCGACAGCAGCTGCTCCACCCCATTCGCCAGCGCGCCGTCCAGCCCCGGCAGGTCGCCTGCCACCGGCGGCGGCTACTTCTTCAGCGCGCCGGCCAGCCCCATCCACCACCTGCTCCTCTCCTCCTCCTCGGTTGCCTCCGGTGTGGTGTCGGGGGCGGGGTATGGCGGCGTGGGCGATGCGGAGTTCGAGTTCGGCGGCCCCGGCGGGCCCATGATCTCCGCCGACGAGCTCTTCCACAACGGCCAGATCCGGCCGCTCACCCTGCCCCCGCTCCCGGATCTCGACCCCGGCAGCGACGACGACGACGGCGGCGGCGGCGACTTCCGCCCCGGGCCGGTGCGAGGCCGCGAGCTGACGCTGCGGAGCGGGTCCGTGCACCGCCGCACGCGGTCCATGTCGCCGCTCCGCGGCGCGTCCCCGCGGCTCAAGCTGCTCAATGCGCTCGTCCCCGCCCCGGATCTTGGCTCCGAGCCAACTCCATCGCACTCGGCTGGGTCGGAGGAGGCCACGCCACCGGTCACCGCCTCGTCACGCTCGTCCTCCTCCTCCTCGACGTCCTCGTCCTCGTCCTCCTCGTCGTCCGCCCGCGGGTCACGGCGGTGGGTGTTCCTCAAGGACATGCTCCTCCACCGCAGCAAGAGCGAGCCAGGCGGAGCCCACGCGCACGACGCCCCCGCCAAGCCCGAGAAGGCGTGGCAGTTCTCGCCCTCGTGGGCATCATCGAGAGACAGGATCGCCGCAAAGCTCCGCGCGGCGAGGTCACCACTACCACCACAGCCACAATCGGAAGCGTCGTCGGACGCCGGCGGCGGCG-AAG-AGGCGCAGGCGACGCG-GGGGCGCGCG-AGGGGCGGCAAGGGCAGGCGGCGCTCGAGCACGGTCGCGGCGGCGCACGAGCGTCTCTACGCGGCGCGGAACCGGGCGCAGGCGGAGGAGATGCGGCGGCGCACGTTCCTCCCCTACCGGCAGGGCCTCCTCGGCTGCCTCGGCTTCAGCTCCCGCGGTTACGGCGCGCTCCACGGCTTCACAAAAACCCTCAACCCCGTCTTCTCCCGGTAAAAACCAAAGGCAAACGCCTCATCGGCCAAAAAAACTCCAAAATAGAGAGCAAATGGGAAGAGCTTAACCAAGTTCTTCGCTGTTGCCCGTTAATTAATTAATATTATTATTTCCTGTGTAAGCGAAGCTTGTACTACTTTGTTTTTTTTTCTTTTCCTTTTTCTGCCTTCGATTTGTGCTTGGGTTTTGTATAGGCAGGCAGCGTGAGAGGGATAACAGGATTCCTCCCTTCGTTCGGAGGCGTTGGTGGTAGTAGTAGTTGTCACAGGTCAGTCACATCAACTGGAAACATCAGCGGTTGGTAAATGTGGCGCGAAGCAGAATGCCTGGTGATTTTTTTCCCCTTCCCCTACCCATTCTTGTGTGCATGGAACTATCATCTCAACCCTGTACTACTCGTAGTAAGTGGAGTATATACACGTTNTACTAAAAA] [+] EMBL AK071041 [ATCCCAACCCTCGTTCCATTCCATCCCACCCCCCCGCCACTACCATCCAAGGGCGCGCCGAGGCGCCATGGACGACGACATCGACAGCAGCTGCTCCACCCCATTCGCCAGCGCGCCGTCCAGCCCCGGCAGGTCGCCTGCCACCGGCGGCGGCTACTTCTTCAGCGCGCCGGCCAGCCCCATCCACCACCTGCTCCTCTCCTCCTCCTCGGTTGCCTCCGGTGTGGTGTCGGGGGCGGGGTATGGCGGCGTGGGCGATGCGGAGTTCGAGTTCGGCGGCCCCGGCGGGCCCATGATCTCCGCCGACGAGCTCTTCCACAACGGCCAGATCCGGCCGCTCACCCTGCCCCCGCTCCCGGATCTCGACCCCGGCAGCGACGACGACGACGGCGGCGGCGGCGACTTCCGCCCCGGGCCGGTGCGAGGCCGCGAGCTGACGCTGCGGAGCGGGTCCGTGCACCGCCGCACGCGGTCCATGTCGCCGCTCCGCGGCGCGTCCCCGCGGCTCAAGCTGCTCAATGCGCTCGTCCCCGCCCCGGATCTTGGCTCCGAGCCAACTCCATCGCACTCGGCTGGGTCGGAGGAGGCCACGCCACCGGTCACCGCCTCGTCACGCTCGTCCTCCTCCTCCTCGACGTCCTCGTCCTCGTCCTCCTCGTCGTCCGCCCGCGGGTCACGGCGGTGGGTGTTCCTCAAGGACATGCTCCTCCACCGCAGCAAGAGCGAGCCAGGCGGAGCCCACGCGCACGACGCCCCCGCCAAGCCCGAGAAGGCGTGGCAGTTCTCGCCCTCGTGGGCATCATCGAGAGACAGGATCGCCGCAAAGCTCCGCGCGGCGAGGTCACCACTACCACCACAGCCACAATCGGAAGCGTCGTCAGACGCCGGCGGCGGCG AAG AGGCGCAGGCGACGCG GGGGCGCGCG AGGGGCGGCAAGGGCAGGCGGCGCTCGAGCACGGTCGCGGCGGCGCACGAGCGTCTCTACGCGGCGCGGAACCGGGCGCAGGCGGAGGAGATGCGGCGGCGCACGTTCCTCCCCTACCGGCAGGGCCTCCTCGGCTGCCTCGGCTTCAGCTCCCGCGGTTACGGCGCGCTCCACGGCTTCACAAAAACCCTCAACCCCGTCTTCTCCCGGTAAAAACCAAAGGCAAACGCCTCATCGGCCAAAAAAACTCCAAAATAGAGAGCAAATGGGAAGAGCTTAACCAAGTTCTTCGCTGTTGCCCGTTAATTAATTAATATTATTATTTCCTGTGTAAGCGAAGCTTGTACTACTTTGTTTTTTTTTCTTTTCCTTTTTCTGCCTTCGATTTGTGCTTGGGTTTTGTATAGGCAGGCAGCGTGAGAGGGATAACAGGATTCCTCCCTTCGTTCGGAGGCGTTGGTGGTAGTAGTAGTTGTCACAGGTCAGTCACATCAACTGGAAACATCAGCGGTTGGTAAATGTGGCGCGAAGCAGAATGCCTGGTGATTTTTTTCCCCTTCCCCTACCCATTCTTGTGTGCATGGAACTATCATCTCAACCCTGTACTACTCGTAGTAAGTGGAGTATATAC ] [+] EMBL C26765 [ TTCCATCCCACCCCCCCGCCACTACCATCCAAGGGCGCGCCGAGGCG CATGGACGACGACATCGACAGCAGCTGCTCCACCCCATTCGCCAGCGCGCCGTCCAGCCCCGGCAGGTCGCCTGCCACCGGCGGCGGCTACTTCTTCAGCGCGCCGGCCAGCCCCATCCACCACCTGCTCCTCTCCTCCTCCTCGGTTGCCTCCGGTGTGGTGTCGGGGGCGGGGTATGGCGGCGTGGGCGATGCGGAGTTCGAGTTCGGCGGTCCCGGNGGGCCCATGATCTCCGCCGACGAGCTCTTCCACA ] [+] EMBL AU068906 [ cnantnCCACCACCTGCTCCTCTCCTCCTCCTCGGTTGCCTCCGGTGTGGTGTCGGGGGCGGGGTATGGCGGCGTGGGCNATGCGGAGTTCGAGTTCGGCGGCCCCGGCGGGCCCATAATCTCCGCCGACGAGCTCTTCCACAACGGCCAGATCCGGCCGCTCACCCTGCCCCCGCTCCCGGATCTCGACCCCGGCAGCAACGACGACGACGGCGGCGGCGGCGACTTCCGCCCCGGGCCGGTGCNAGGNCGCAAGCTGACGCTNCGGAGGGGGTCCGTGCACCGCCGCACGCGGgtc ] [+] EMBL C27389 [ CCAACTCCATCGCACTCGGCTGGGTCGGAGGAGGCCACGCCACCGGTCACCGCCTCGTCACGCTCGTCCTCCTCCTCCTCGACGTCCTCGTCCTCGTCCTCCTCGTCGTCCGCCCGCGGGTCACGGCGGTGGGTGTTCCTCAAGGACATGCTCCTCCACCGCAGCAAGAGCGAGCCAGGCGGANCCAACGCGCACGACGCCCCCGCCAAGCCCGAGAAGGCGTGGCAGTTCTCGCCCTCGTGGGCATCATCGAGAGACAGGATCGCCGCAAAGCTCCGCGCGGCGAGGTCACCACTACCACCACAGCCACAATCGGAAGCNTCGTCGGACGCNGGCGG GGCGAAAGAAGGCGCAGGCGACGCGNGGGGCGCGCGAATGGGCGGCAAGGGCAGGCGGCGgt ] [+] EMBL AU181504 [ CAAAGCTCCGCGCGGCGAGGTCACCACTACCACCACAGCCACAATCGGAAGCGTCGTCGGACGCCGGCGGCGGCG AAG AGGCGCAGGCGACGCG GGGGCGCGCG AGGGGCGGCAAGGGCAGGCGGCGCTCGAGCACGGTCGCGGCGGCGCACGAGCGTCTCTACGCGGCGCGGAACCGGGCGCAGGCGGAGGAGATGCGGCGGCGCACGTTCCTCCCCTACCGGCAGGGCCTCCTCGGCTGCCTCGGCTTCAGCTCCCGCGGTTACGGCGCGCTCCACGGCTTCACAAAAACCCTCAACCCCGTCTTCTCCCGGTAAAAACCAAAGGCAAACGCCTCATCGGCCAAAAAAACTCCAAAATAGAGAGCAAATGGGAAGAGCTTAACCAAGTTCTTCGCTGTTGCCCGTTAATTAATTAATATTATTATTTCCTGTGTAAaaa ] [+] EMBL AU166880 [ GGTAAAAACCAAAGGCAAACGCCTCATCGGCCAAAAAAACTCCAAAATAGAGAGCAAATGGGAAGAGCTTAACCAAGTTNTTCGCTGTTGCCCGTTAATTAATTAATATTATTATTTCCTGTGTAAGCGAAGCTTGTACTACTTTGTTTTTTTTTCTTTTCCTTTTTCTGCCTTCGATTTGTGCTTGGGTTTTGTATAGGCAGGCAGCGTGAGAGGGATAACAGGATTCCTCCCTTCGTTCGGAGGCGTTGGTGGTAGTAGTAGTTGTCACAGGTCAGTCACATCAACTGGAAACATCAGCGGTTGGTAAATGTGGCGCGAAGCAGAATGCCTGGTGATTTTTTTCCCCTTCCCCTACCCATTCTTGTGTGCATGGAACTATCATCTCAACCCTGTACTACTCGTAGTAAGTGGAGTATATACACGTTNTACTAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||