cluster # 9459

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Oryza sativa
cluster # 9459 cluster # 9459 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9459#0 length = 936 sequences # 5

consensus_9459#1 length = 694 sequences # 1

consensusID : consensus_9459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 936
fasta sequence

                              [CAGAACGACCGACCGTACTTCTGGTTCCCCGTCCACCTCCTCCCCACCGCGCGATCCATGGCGTTCGCCGGCATCCGCTCCGGCGTCCTCAGATCGGTGGCGGGTGTGGACGGTCTCGCCGCCGCCGCCGCGG-CGCGCCCCACTCCTCTCCTCCCGCGCGTCCACCTCGCCGGCGACGGCACGGGGCGGATGGCGACCACCATCGGGTTCTGCCCCCGTCTCAGAGCCGCGCCGCCGTCCTGCAAGAAGGCGGAGGCGGACCCGGCGCCGTCTCTCCAGGATGCGGTGGTGGCGGTGGATGCTGTGCTGCGTGCCCCTCCACCTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTGGAGTTTCTGAAGAAACACTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCGATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK063579             [CAGAACGACCGACCGTACTTCTGGTTCCCCGTCCACCTCCTCCCCACCGCGCGATCCATGGCGTTCGCCGGCATCCGCTCCGGCGTCCTCAGATCGGTGGCGGGTGTGGACGGTCTCGCCGCCGCCGCCGCGG CGCGCCCCACTCCTCTCCTCCCGCGCGTCCACCTCGCCGGCGACGGCACGGGGCGGATGGCGACCACCATCGGGTTCTGCCCCCGTCTCAGAGCCGCGCCGCCGTCCTGCAAGAAGGCGGAGGCGGACCCGGCGCCGTCTCTCCAGGATGCGGTGGTGGCGGTGGATGCTGTGCTGCGTGCCCCTCCACCTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTGGAGTTTCTGAAGAAACACTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCGATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGT                                        ]
[+] EMBL AU069139             [               TACTTCTGGTTCCCCGTCCACCTCCTCCCCACCGCGCGATCCATGGCGTTCGCCGGCATCCGCTCCGGCGTCCTCAGATCGGTGGCGGGTGTGGACGGTCTCGCCGCCGCCGCCGCGG  GCGCCCCACTCCTCTCCTCCCGCGCGTCCACCTCGCCGGCGACGGCACGGGGCGGATGGCGACCACCATCGGGTTCTGCCCCCGTCTCAGAGCCGCGCCGCCGTCCTGCAAGAAGGCGGAGGCGGACCCGGCGCCGTCTCTCCAGGATGCGGTGGTGGCGGTGGATGCTGTGCTGCGTGCCCCTCCAACTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTGGA TTTCTGAAGAAACACTCGCTcaatcta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS12962A            [               TACTTCTGGTTCCCCGTCCACCTCCTCCCCACCGCGCGATCCATGGCGTTCG CGGCATCCGCTCCGNCGTCCTCAGATCGGTGGCGGGTGTGGACGGTCTCGCCGCCGCCGCCGCGGACGC ACCCACTCCTCTCCTCCCGCGCGTCCACCTCGCCGGCGAC GCACGNGGCGGATGGCGACCACCATCGGGTTCTGCCCCCGTCTCAGAGCCGCGACGCCGTCCTGCAAGAAGGCGTAGGCGGACCCGGCGCCGTCTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA765484             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     TATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATGCAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGGCACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAAAAAA                     ]
[+] EMBL AU096253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAATAGGAAGTTTNCCTAGATNGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9459#0
CAGAACGACCGACCGTACTTCTGGTTCCCCGTCCACCTCCTCCCCACCGCGCGATCCATG
GCGTTCGCCGGCATCCGCTCCGGCGTCCTCAGATCGGTGGCGGGTGTGGACGGTCTCGCC
GCCGCCGCCGCGGCGCGCCCCACTCCTCTCCTCCCGCGCGTCCACCTCGCCGGCGACGGC
ACGGGGCGGATGGCGACCACCATCGGGTTCTGCCCCCGTCTCAGAGCCGCGCCGCCGTCC
TGCAAGAAGGCGGAGGCGGACCCGGCGCCGTCTCTCCAGGATGCGGTGGTGGCGGTGGAT
GCTGTGCTGCGTGCCCCTCCACCTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTG
GAGTTTCTGAAGAAACACTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTG
ACGAGGAGAAGGCGATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACA
TCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAA
CTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGG
AGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTT
ATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTT
GTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATAT
ATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACA
CATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTT
TCTGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CGGCGCCGTCTCTCCAGGATGCGTTGGTGCCGTTGGATGCTGTGCTGCGTGCCCCTCCACTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTGGAGTTTCTGAAGAAACACTCGCTCAATCTACTGATCCTTGCCCTGTGCCTCTTCGTGGGTGCGCTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCGATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAA]

[+] EMBL AU085758             [CGGCGCCGTCTCTCCAGGATGCGTTGGTGCCGTTGGATGCTGTGCTGCGTGCCCCTCCACTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTGGAGTTTCTGAAGAAACACTCGCTCAATCTACTGATCCTTGCCCTGTGCCTCTTCGTGGGTGCGCTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCGATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAA]




>consensus_9459#1
CGGCGCCGTCTCTCCAGGATGCGTTGGTGCCGTTGGATGCTGTGCTGCGTGCCCCTCCAC
TCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTGGAGTTTCTGAAGAAACACTCGCT
CAATCTACTGATCCTTGCCCTGTGCCTCTTCGTGGGTGCGCTCGCTTTCAAGGGAGAGGA
GAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCGATTATCGCGGTGAAAGTGTGCGA
CAAGGCTAACAAGATATACAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCAT
CCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGA
GTCGACATTATGCAGATAATAGGAGGTTGAGGTTGATACTATGCAGGCAATAGGAAGTTT
ACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCT
ATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGAT
TTGCTGCCCTATGTCACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTC
GAAGGGATATCGTCATATCGACACATGTTGGCACATTTTAAGCTGGCCCATTTTATATCT
GAAATATATGTGCTTTGGTTTTTTCTGCGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9459#0      CAGAACGACCGACCGTACTTCTGGTTCCCCGTCCACCTCCTCCCCACCGCGCGATCCATG 60
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      GCGTTCGCCGGCATCCGCTCCGGCGTCCTCAGATCGGTGGCGGGTGTGGACGGTCTCGCC 120
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      GCCGCCGCCGCGGCGCGCCCCACTCCTCTCCTCCCGCGCGTCCACCTCGCCGGCGACGGC 180
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      ACGGGGCGGATGGCGACCACCATCGGGTTCTGCCCCCGTCTCAGAGCCGCGCCGCCGTCC 240
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      TGCAAGAAGGCGGAGGCGGACCCGGCGCCGTCTCTCCAGGATGCGGTGGTGGCGGTGGAT 300
consensus_9459#1      ----------------------CGGCGCCGTCTCTCCAGGATGCGTTGGTGCCGTTGGAT 38
                                            *********************** ***** ** *****

consensus_9459#0      GCTGTGCTGCGTGCCCCTCCACCTCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTG 360
consensus_9459#1      GCTGTGCTGCGTGCCCCTCCAC-TCCCCAAGAGCATGGCGGCAAGATGGCGGCGATTCTG 97
                      ********************** *************************************

consensus_9459#0      GAGTTTCTGAAGAAACACTCGCT------------------------------------- 383
consensus_9459#1      GAGTTTCTGAAGAAACACTCGCTCAATCTACTGATCCTTGCCCTGTGCCTCTTCGTGGGT 157
                      ***********************                                     

consensus_9459#0      ---------TTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCG 434
consensus_9459#1      GCGCTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCG 217
                               ***************************************************

consensus_9459#0      ATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATC 494
consensus_9459#1      ATTATCGCGGTGAAAGTGTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATC 277
                      ************************************************************

consensus_9459#0      GCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGAT 554
consensus_9459#1      GCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGACGGTAGCTAACTGCCATCGAAGAT 337
                      ************************************************************

consensus_9459#0      GTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGAT 614
consensus_9459#1      GTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTTGAT 397
                      ************************************************************

consensus_9459#0      ACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATA 674
consensus_9459#1      ACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATA 457
                      ************************************************************

consensus_9459#0      TTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTA 734
consensus_9459#1      TTCAGGATTTGATTTGCTGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTA 517
                      ************************************************************

consensus_9459#0      GCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTT 794
consensus_9459#1      GCTAGATATATTCAGGATTTGATTTGCTGCCCTATGTCACACATATATCCAGTTTGTTTT 577
                      ************************************************************

consensus_9459#0      TGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATT 854
consensus_9459#1      TGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCACATT 637
                      ************************************************************

consensus_9459#0      TTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAAAAA 914
consensus_9459#1      TTAAGCTGGCCCATTTTATATCTGAAATATATGTGCTTTGGTTTTTTCTGCGAAAAA--- 694
                      *********************************************************   

consensus_9459#0      AAAAAAAAAAAAAAAAAAAAAA 936
consensus_9459#1      ----------------------