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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1015 fasta sequence
[GAAAAGCGAGATGCCACCGCTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGCCGGAGGACGAGTGCNAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCGGTGGTTCTAAGGAATGGGGCGGCGACGTTNATGGCGAGTATNACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCAAGGTCGGGGCGGTGCTGGAGCGGGAGGACTCCACCAAGGGNGCCTCCAACCCCAAGTCGGCCGCGGCCTGCAGCTGCGCCGGCGCGCCGGCGGCGAGGATGCCGACGTGCGCCGGCGGAGGCGGGACGGCGAAGGCGGTCGTCATCGCGGGGCTGCCCGCGGCGGCGCGGAAGGCCTCGCGGGAGCACGAGCGGCGGCGGCGGCTCGGCCGCGCCCGAGCCCGCGCGCGGGTGTTCGCCGGGGACGCCGTGGAGGTGGCGGAGCCCGGGTCGCCCAAGGTGTCCTGCCTCGGCGGCGTCCGGTCGCGGGCGCGGGCGCAGCAGCCGTGCTGTCCCGCCGCGGCAGCTGCGGGGAGGCGGCGGTGGTGGTGCGCGCCGTGGTTGGTGAGCGCCGCGTGCCGCCGGTGCTGGAGCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCACGTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCCCCTCCTCGATGAATGTCTATCTGCTTTAAGTTCCCTGTGACTGTACGTGAAAGCTGAGTACGGTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCTCTCCAATGTCACGCTCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGCTGTTCTAAAGGGTTGATACGAAAT]
[+] EMBL AU069500 [GAAAAGCGAGATGCCACCGCTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGCCGGAGGACGAGTGCNAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCGGTGGTTCTAAGGAATGGGGCGGCGACGTTNATGGCGAGTATNACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCAAGGTCGGGGCGGTGCTGGAGCGGGAGGACTCCACCAAGGGNGCCTCCAACCCCAAGTCG ]
[+] EMBL CB670804 [ GGACGGCCTTTGTGGTTCTGAGGAATGGGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCGAGGTCGGGGCGGTGCTGGAGCGGGAGGACTCCACCAAGGGCGCCTCCAACCCCAAGTCGGCCGCGGCCTGCAGCTGCGCCGGCGCGCCGGCGGCGAGGATGCCGACGTGCGCCGGCGGAGGCGGGACGGCGAAGGCGGTCGTCATCGCGGGGCTGCCCGCGGCGGCGCGGAAGGCCTCGCGGGAGCACGAGCGGCGGCGGCGGCTCGGCCGCGCCCGAGCCCGCGCGCGGGTGTTCGCCGGGGACGCCGTGGAGGTGGCGGAGCCCGGGTCGCCCAAGGTGTCCTGCCTCGGCGGCGTCCGGTCGCGGGCGCGGGCGCAGCAGCCGTGCTGTCCCGCCGCGGCAGCTGCGGGGAGGCGGCGGTGGTGGTGCGCGCCGTGGTTGGTGAGCGCCGCGTGCCGCCGGTGCTGGAGCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCACGTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCCCCTCCTCGATGAATGTCTATCTGC ]
[-] EMBL CB670805 [ GCGGCTCGGCCGCGCCCGAGCCCGCGCGCGGGTGTTTGCCGGGGACGCCGTGGAGGTGGCGGAGCCCGGGTCGCCCAAGGTGTCCTGCCTCGGCGGCGTCCGGTCGCGGGCGCGGGCGCAGCAGCCGTGCTGTCCCGCCGCGGCAGCTGCGGGGAGGCGGCGGTGGTGGTGCGCGCCGTGGTTGGTGAGCGCCGCGTGCCGCCGGTGCTGGAGCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCACGTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCACCTCCTCGATGAATGTCTATCTGCTTTAAGTTCCCTGTGACTGTACGTGAAAGCTGAGTACGGTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCTCTCCAATGTCACGCTCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGCTGTTCTAAAGGGTTGATACGAAAT]
consensusID : consensus_9462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence
[GAGATGCCACCGGNTTACTCTCGATTCCCTCTTGCACGGCGTCGGCGGCGAGCCGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGNCGGTGGTTCTGAGGAAT-GGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTNAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCACGTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCACCTCCTCGATGAATGTCTATCTGCTTTAAGTTCCCTGTGACTGTACGTGAAAGCTGAGTACGGTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCTCTCCAATGTCACGCTCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGCTGTACAAATGCATTGATACGAAATTACAGAAAGAGGTGCACATAATACGCCGCCTTATCAAAAAAAAAAA]
[+] EMBL AU089823 [GAGATGCCACCGGNTTACTCTCGATTCCCTCTTGCACGGCGTCGGCGGCGAGCCGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGNCGGTGGTTCTGAGGAAT GGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCGCCCCGCCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTNAGGCGTCGCCGTCGAGTTCAGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCACGTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCACCTCCTCGATGAATGTCTATCTGCTTTAAGTTCCCTGTGACTGTACGTGAAAGCTGAGTACGGTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCTCTCCAATGTCACGCTCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGCTGTACAAATGCATTGATACGAAATTACAGAAAGAGGTGCACATAATACGCCGCCTTATCAAAAAAAAAAA]
[+] EMBL OSS16493A [ AGATGCCACC GCTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGCCGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCGGTGGTTCTGAGGAATGGGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCGCCCCGNCACCGCGCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTCAGAGGCAATTTTGCGAAGGCGACGCCGCGAC GCGGACGGCGNGGTCAGGGGTCGTGCAA CACGTACGCGACGGCTTACCGGCGAAACGTACANTTTGGTCAGGAATTTTGGGCCCA CTCC ]
consensusID : consensus_9462#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[CCACCGCTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGCCGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCGGTGGTTCTGAGGAATGGGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCATGATCGGTGAGGACATCGACTGGAGCGAGGTCGGGGCGGTGCTGGAGCGGGAGGACTTCACCAAGGGCGCCTTCAACCCCAAGTCGGCCGTGGTCTGCAGCTGCGCCGGCGCGCCCGCCGCTAGGATGCCGACATGCGCCGGCCGAGGTGGAACGGCAAATGCGGTCCTCATCGCGGTGTGTGCCTGCTGTTGCTCTTATACGTCTTTCAGTTATTATCTATCTGCGTCTTTTGTGTTTTTAATCTCGGACTTCCTACTCCCACCTTCTTTTTTCTTCAACATTACTTATTTATATTCCAGTTGTCGTCTTCTCTTCTATGGTTACTTTCTTTCTTTCTTTA]
[+] EMBL CA758582 [CCACCGCTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGCCGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCGGTGGTTCTGAGGAATGGGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGGAGTCGCTGTGGCTCATGATCGGTGAGGACATCGACTGGAGCGAGGTCGGGGCGGTGCTGGAGCGGGAGGACTTCACCAAGGGCGCCTTCAACCCCAAGTCGGCCGTGGTCTGCAGCTGCGCCGGCGCGCCCGCCGCTAGGATGCCGACATGCGCCGGCCGAGGTGGAACGGCAAATGCGGTCCTCATCGCGGTGTGTGCCTGCTGTTGCTCTTATACGTCTTTCAGTTATTATCTATCTGCGTCTTTTGTGTTTTTAATCTCGGACTTCCTACTCCCACCTTCTTTTTTCTTCAACATTACTTATTTATATTCCAGTTGTCGTCTTCTCTTCTATGGTTACTTTCTTTCTTTCTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9462#0 GAAAAGCGAGATGCCACCG-CTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGC 59
consensus_9462#2 -------------CCACCG-CTTACTCTCGATTCCCTCTTGCACGGCGGCGGCGGCGAGC 46
consensus_9462#1 -------GAGATGCCACCGGNTTACTCTCGATTCCCTCTTGCACGGCGTCGGCGGCGAGC 53
****** *************************** ***********
consensus_9462#0 CGGAGGACGAGTGCNAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCG 119
consensus_9462#2 CGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGGCG 106
consensus_9462#1 CGGAGGACGAGTGCGAAGACGAGTTCTCCGGTTCCGACGACGACGGCGAGGACGGTGNCG 113
************** ****************************************** **
consensus_9462#0 GTGGTTCTAAGGAATGGGGCGGCGACGTTNATGGCGAGTATNACCCGTACTCCCCAGCGG 179
consensus_9462#2 GTGGTTCTGAGGAATGGGGCGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGG 166
consensus_9462#1 GTGGTTCTGAGGAATGGG-CGGCGACGTTGATGGCGAGTATGACCCGTACTCCCCAGCGG 172
******** ********* ********** *********** ******************
consensus_9462#0 AGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCAAG--GTCGGGGCG-GTGC 236
consensus_9462#2 AGTCGCTGTGGCTCATGATCGGTGAGGACATCGACTGGAGCGAG--GTCGGGGCG-GTGC 223
consensus_9462#1 AGTCGCTGTGGCTCAGGATCGGGGAGGACATCGACTGGAGCGCCCCGCCACCGCGCGTGT 232
*************** ****** ****************** * * *** ***
consensus_9462#0 TGGAGCGGGAGGACTCCACCAAGGGNGCCTCCAACCCCAAGTCGGCCGCGGCCTGCAGCT 296
consensus_9462#2 TGGAGCGGGAGGACTTCACCAAGGGCGCCTTCAACCCCAAGTCGGCCGTGGTCTGCAGCT 283
consensus_9462#1 AGGTACGGTGGTGGTT-GCCGGTGGAAGCAAAGGTNAGGCGTCG-CCGTCGAGTTCAGAG 290
** *** * * ** ** * **** *** * * ***
consensus_9462#0 GCG--CCGGCGCGCCGGCGGCGAGGATGCCGACGTGCGCCGGCGGAGGCGG---GACGGC 351
consensus_9462#2 GCG--CCGGCGCGCCCGCCGCTAGGATGCCGACATGCGCCGGCCGAGGTGG---AACGGC 338
consensus_9462#1 GCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAACCAC 350
** **** * ** ** * ** *** * * * ** * ** *
consensus_9462#0 GAAGGCGGTCGTCATCGCGGGGC-TGCCCGCGGCGGCGCGGAAGGCCTCGCGGGAGCACG 410
consensus_9462#2 AAATGCGGTCCTCATCGCGGTGTGTGCCTGCTGTTGCTCTTA--------------TACG 384
consensus_9462#1 GTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAA----TTGTGGGCCCACC 406
* *** * * * * * **
consensus_9462#0 AGCGGCGGCGGCGGCTCGGCCGCGCCCGAGCCCGCGCGCGGGTGTTCGCCGGGGACGCCG 470
consensus_9462#2 TCTTTCAGTTATTATCTATCTGCGTCT---TTTGTGT-----TTTTAATCTCGGACTTCC 436
consensus_9462#1 TCCT-CGATGAATGTCTATCTGCTTTAAGTTCCCTGTG---ACTGTACGTGAAAGCTGAG 462
* * ** * * *
consensus_9462#0 TGGAGGTGGCGG-AGCCCGGGTCGCCCAAGGTGTCCT-GCCTCGGCGGCGTCCGGTCGCG 528
consensus_9462#2 TA---CTCCCAC-CTTCTTTTTTCTTCAACATTACTT-ATTTATATTCCAGTTG-TCGTC 490
consensus_9462#1 TACGGTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCTCTCCAATGTC 522
* * *** * * *
consensus_9462#0 -GGCGCGGGCGCAGCAGCCGTGCTGTCCCGCCGCGGCAGCTGCGGGGAGGCGGCGGTGGT 587
consensus_9462#2 -TTCTCTTCTATGGTTACTTT-CTTTCTTTCTTTA------------------------- 523
consensus_9462#1 ACGCTCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGCTGTACAAATGCA 582
* * * *
consensus_9462#0 GGTGCGCGCCGTGGTTGGTGAGCGCCGCGTGCCGCCGGTGCTGGAGCGCCCCGCCACCGC 647
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 TTGATACGAAATTACAGAAAGAGGTGCACATAATACGCCGCCTTATCAAAAAAAAAAA-- 640
consensus_9462#0 GCGTGTAGGTACGGTGGTGGTTGCCGGTGGAAGCAAAGGTGAGGCGTCGCCGTCGAGTTC 707
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 ------------------------------------------------------------
consensus_9462#0 AGAGGCAATTTGGCGAAGGCGACGCCGCGACGGCGGACGGCGGGGTCAGGGGTCGTGCAA 767
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 ------------------------------------------------------------
consensus_9462#0 CCACGTACGCGACGGCTGACCGGCGAAACGTACAGTTTGGTCAGGAATTGTGGGCCCCCC 827
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 ------------------------------------------------------------
consensus_9462#0 TCCTCGATGAATGTCTATCTGCTTTAAGTTCCCTGTGACTGTACGTGAAAGCTGAGTACG 887
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 ------------------------------------------------------------
consensus_9462#0 GTGGCCGTTCAAATTGGAATTCCAATGGGCCTCGATCCATATGCCTCTCCAATGTCACGC 947
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 ------------------------------------------------------------
consensus_9462#0 TCTGTTTTGTTCATCTTTTGTGCTAAATGTTTCCCAAATGTTGCTGTTCTAAAGGGTTGA 1007
consensus_9462#2 ------------------------------------------------------------
consensus_9462#1 ------------------------------------------------------------
consensus_9462#0 TACGAAAT 1015
consensus_9462#2 --------
consensus_9462#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||