These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1215 fasta sequence [CTGCGCGGCCGCGTGCATCCGCTGCGCTGTGCTGCCATTTCTCTTCAGCTTAAAAAGCGAGCCCTACCATTTCCTCTCTCTCTTCTTGTCATCCTCCTCATCTCTTCTTCCTCCCTCGTCTCACCAACAGCGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAGCCGAAGGTGGTGACGACCACCAACCACGCCGCCGGCGCCCTCGCGCGGATGGAGGGCCGCCGCGCCGAGGCGCCGAGCATGGCCATGGCGGCGGCGATGGCGCCGGCGCCCATGCCGATGACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCGCCGCTGGAGTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCGTACGGGTACGGCGGCCGGAGCCCGTACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTAAATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTACAATGTTTTATTTAAAAGAGTGTTCTTTTGTGCTAAAAAA] [+] EMBL AK071008 [CTGCGCGGCCGCGTGCATCCGCTGCGCTGTGCTGCCATTTCTCTTCAGCTTAAAAAGCGAGCCCTACCATTTCCTCTCTCTCTTCTTGTCATCCTCCTCATCTCTTCTTCCTCCCTCGTCTCACCAACAGCGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAGCCGAAGGTGGTGACGACCACCAACCACGCCGCCGGCGCCCTCGCGCGGATGGAGGGCCGCCGCGCCGAGGCGCCGAGCATGGCCATGGCGGCGGCGATGGCGCCGGCGCCCATGCCGATGACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCGCCGCTGGAGTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCGTACGGGTACGGCGGCCGGAGCCCGTACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTAAATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTACAATGTTTTATTTAAAAGAGTGTT ] [+] EMBL AU070243 [ CGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCTGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTNGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCNGCGGCGG ] [+] EMBL BI805113 [ GAGCCCGTACCA CC CCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTAAATTTGAACCAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGC ATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTAC ATGTTTTATTTAAAAGAGTGTTCTTTTGTGCTAAAAAA] consensusID : consensus_9473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence [TAGCTATAGCTAGGATTAATGCTCACTGATGTAGTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGCTNTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCATAGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATTGCCTACTGTTGTNCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGATTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGTTGTATCTCTGCTTTGTTGATCTCACCTCAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAAGCCGAAGGTGGTGACGACCACCAACCACGCCG] [+] EMBL OSR21021A [TAGCTATAGCTAGGATTAATGCTCACTGATGTAGTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGCTNTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCATAGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATTGCCTACTGTTGTNCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGATTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGTTGTATCTCTGCTTTGTTGATCTCACCTCAGATGTCTACAATTGTGATGA ] [+] EMBL CB642871 [ AGCTATCCTTAAGATTAATGCTCACTGATGTAGTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGCTTTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCATAGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATTGCCTACTGTTGTTCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGATTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGTTGTATCTCTGCTTTGTTGATCTCACCTCAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAAGCCGAAGGTGGTGACGACCACCAACCACGCCG] consensusID : consensus_9473#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [AACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097562 [AACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9473#0 CTGCGCGGCCGCGTGCATCCGCTGCGCTGTGCTGCCATTTCTCTTCAGCTTAAAAAGCGA 60 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 GCCCTACCATTTCCTCTCTCTCTTCTTGTCATCCTCCTCATCTCTTCTTCCTCCCTCGTC 120 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TCACCAACAGCGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAG 180 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGA 240 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAG 300 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGC 360 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCA 420 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 GGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGC 480 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 GCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAG 540 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAG 600 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 CCGAAGGTGGTGACGACCACCAACCACGCCGCCGGCGCCCTCGCGCGGATGGAGGGCCGC 660 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 CGCGCCGAGGCGCCGAGCATGGCCATGGCGGCGGCGATGGCGCCGGCGCCCATGCCGATG 720 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCG 780 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 ---------------------------TAGCTATAGCTAGGATTAATGCTCACTGATGTA 33 consensus_9473#0 CCGCTGGAGTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCG 840 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 GTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGC 93 consensus_9473#0 TACGGGTACGGCGGCCGGAGCCCGTACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGC 900 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 TNTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCAT 153 consensus_9473#0 TGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAA 960 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 AGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATT 213 consensus_9473#0 AAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCAT 1020 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 GCCTACTGTTGTNCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGA 273 consensus_9473#0 GTGTAAATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAAT 1080 consensus_9473#2 -----------AACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAAT 49 consensus_9473#1 TTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGT-TGTATCTCTGCTTTGT--T 330 * * * ** * * ** ** ** **** * ** *** * consensus_9473#0 GTAATGTTTTCAACTTGGTGTATTTATGATGATGA--AAACAAGTATGCAATCAGGGTTT 1138 consensus_9473#2 GTAATGTTTTCAACTTGGTGTATTTATGATGATGA--AAACAAGTATGCAAAAAAAAAAA 107 consensus_9473#1 GATCTCACCTCAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTA 390 * * *** * * * ** ******** * * * *** * consensus_9473#0 CTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTACAATGTTTTATTTAAAAGAGTGT 1198 consensus_9473#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 152 consensus_9473#1 CAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTC 450 * * * * consensus_9473#0 TCTTTTGTGCTAAAAAA------------------------------------------- 1215 consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 GTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTC 510 consensus_9473#0 ------------------------------------------------------------ consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 GGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGC 570 consensus_9473#0 ------------------------------------------------------------ consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 CAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGG 630 consensus_9473#0 ------------------------------------------------------------ consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 GAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAA 690 consensus_9473#0 ------------------------------------------------------------ consensus_9473#2 ------------------------------------------------------------ consensus_9473#1 GAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCA 750 consensus_9473#0 --------------------------------------------- consensus_9473#2 --------------------------------------------- consensus_9473#1 CGACAACAGGAAAGCCGAAGGTGGTGACGACCACCAACCACGCCG 795 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||