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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1215 fasta sequence
[CTGCGCGGCCGCGTGCATCCGCTGCGCTGTGCTGCCATTTCTCTTCAGCTTAAAAAGCGAGCCCTACCATTTCCTCTCTCTCTTCTTGTCATCCTCCTCATCTCTTCTTCCTCCCTCGTCTCACCAACAGCGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAGCCGAAGGTGGTGACGACCACCAACCACGCCGCCGGCGCCCTCGCGCGGATGGAGGGCCGCCGCGCCGAGGCGCCGAGCATGGCCATGGCGGCGGCGATGGCGCCGGCGCCCATGCCGATGACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCGCCGCTGGAGTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCGTACGGGTACGGCGGCCGGAGCCCGTACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTAAATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTACAATGTTTTATTTAAAAGAGTGTTCTTTTGTGCTAAAAAA]
[+] EMBL AK071008 [CTGCGCGGCCGCGTGCATCCGCTGCGCTGTGCTGCCATTTCTCTTCAGCTTAAAAAGCGAGCCCTACCATTTCCTCTCTCTCTTCTTGTCATCCTCCTCATCTCTTCTTCCTCCCTCGTCTCACCAACAGCGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAGCCGAAGGTGGTGACGACCACCAACCACGCCGCCGGCGCCCTCGCGCGGATGGAGGGCCGCCGCGCCGAGGCGCCGAGCATGGCCATGGCGGCGGCGATGGCGCCGGCGCCCATGCCGATGACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCGCCGCTGGAGTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCGTACGGGTACGGCGGCCGGAGCCCGTACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTAAATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTACAATGTTTTATTTAAAAGAGTGTT ]
[+] EMBL AU070243 [ CGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCTGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTNGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCNGCGGCGG ]
[+] EMBL BI805113 [ GAGCCCGTACCA CC CCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTAAATTTGAACCAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGC ATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTAC ATGTTTTATTTAAAAGAGTGTTCTTTTGTGCTAAAAAA]
consensusID : consensus_9473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence
[TAGCTATAGCTAGGATTAATGCTCACTGATGTAGTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGCTNTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCATAGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATTGCCTACTGTTGTNCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGATTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGTTGTATCTCTGCTTTGTTGATCTCACCTCAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAAGCCGAAGGTGGTGACGACCACCAACCACGCCG]
[+] EMBL OSR21021A [TAGCTATAGCTAGGATTAATGCTCACTGATGTAGTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGCTNTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCATAGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATTGCCTACTGTTGTNCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGATTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGTTGTATCTCTGCTTTGTTGATCTCACCTCAGATGTCTACAATTGTGATGA ]
[+] EMBL CB642871 [ AGCTATCCTTAAGATTAATGCTCACTGATGTAGTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGCTTTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCATAGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATTGCCTACTGTTGTTCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGATTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGTTGTATCTCTGCTTTGTTGATCTCACCTCAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAAGCCGAAGGTGGTGACGACCACCAACCACGCCG]
consensusID : consensus_9473#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence
[AACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097562 [AACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTTATGATGATGAAAACAAGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9473#0 CTGCGCGGCCGCGTGCATCCGCTGCGCTGTGCTGCCATTTCTCTTCAGCTTAAAAAGCGA 60
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 GCCCTACCATTTCCTCTCTCTCTTCTTGTCATCCTCCTCATCTCTTCTTCCTCCCTCGTC 120
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 TCACCAACAGCGAGGTGACTGAGAGAAGCTAGCTTGGGAGAATAATCCATGGCAGGCAAG 180
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 ATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTACAGGAAGATCAGA 240
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 AGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTCGTACGACGAGAAG 300
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 AACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTCGGACAGGCTCTGC 360
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 TCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGCCAAACCCATGCCA 420
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 GGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGGGAAGGACGGCAGC 480
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 GCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAAGAAGCACGTCAAG 540
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 TTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCACGACAACAGGAAG 600
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 CCGAAGGTGGTGACGACCACCAACCACGCCGCCGGCGCCCTCGCGCGGATGGAGGGCCGC 660
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 CGCGCCGAGGCGCCGAGCATGGCCATGGCGGCGGCGATGGCGCCGGCGCCCATGCCGATG 720
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ------------------------------------------------------------
consensus_9473#0 ACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCG 780
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 ---------------------------TAGCTATAGCTAGGATTAATGCTCACTGATGTA 33
consensus_9473#0 CCGCTGGAGTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCG 840
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 GTGATGTCTACTCCTCTGCTTCTATAACCTTCAAAGAAAGGGAAAAAGAAACTCCTCTGC 93
consensus_9473#0 TACGGGTACGGCGGCCGGAGCCCGTACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGC 900
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 TNTTCTAACCTTCCAAAAAAAAATTCTTCTACTTATCTTAAAGAATAGTAGTACCATCAT 153
consensus_9473#0 TGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGAGTCTTCTTGTGTGAA 960
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 AGAACTCTATACTTTCAGACAGGTTAAAAGGGCTAATTAAATTGTATCTTAGTTAGCATT 213
consensus_9473#0 AAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCAT 1020
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 GCCTACTGTTGTNCTCTACTTCTCATTGGACATGATGGTCTAGTGTTCTTGTTACAGTGA 273
consensus_9473#0 GTGTAAATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAAT 1080
consensus_9473#2 -----------AACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAAT 49
consensus_9473#1 TTAATCACCCACATATGTTTGTGTCGTCATACTAACAAGT-TGTATCTCTGCTTTGT--T 330
* * * ** * * ** ** ** **** * ** *** *
consensus_9473#0 GTAATGTTTTCAACTTGGTGTATTTATGATGATGA--AAACAAGTATGCAATCAGGGTTT 1138
consensus_9473#2 GTAATGTTTTCAACTTGGTGTATTTATGATGATGA--AAACAAGTATGCAAAAAAAAAAA 107
consensus_9473#1 GATCTCACCTCAGATGTCTACAATTGTGATGATGGTGGATCTTGAATGTGACAGATGCTA 390
* * *** * * * ** ******** * * * *** *
consensus_9473#0 CTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTACAATGTTTTATTTAAAAGAGTGT 1198
consensus_9473#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 152
consensus_9473#1 CAGGAAGATCAGAAGGGTCCTCTGCAAGCTCCAAGATAAGGCGAGCATCAAGGCCATCTC 450
* * * *
consensus_9473#0 TCTTTTGTGCTAAAAAA------------------------------------------- 1215
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 GTACGACGAGAAGAACAACACGGTGACGGTGGCGGGGCCGTTCGACGCCGACGAGGTCTC 510
consensus_9473#0 ------------------------------------------------------------
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 GGACAGGCTCTGCTCCAGCGCCGGCAAGGTCATCACCGACATTCGCGTCGTCGGTGGTGC 570
consensus_9473#0 ------------------------------------------------------------
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 CAAACCCATGCCAGGCGGCGGCGGCGGTGGCGCCAAGGCGCACGCCAACAAGCCGGCCGG 630
consensus_9473#0 ------------------------------------------------------------
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 GAAGGACGGCAGCGCAGGCGGCGGCGGCGGCGGCGGCGGAGGAAAGCCGGAGATGATCAA 690
consensus_9473#0 ------------------------------------------------------------
consensus_9473#2 ------------------------------------------------------------
consensus_9473#1 GAAGCACGTCAAGTTCGAGATGGCGGACGACATGGACGACGGCCGCCACCACCACCACCA 750
consensus_9473#0 ---------------------------------------------
consensus_9473#2 ---------------------------------------------
consensus_9473#1 CGACAACAGGAAAGCCGAAGGTGGTGACGACCACCAACCACGCCG 795
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||