cluster # 9485

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Oryza sativa
cluster # 9485 cluster # 9485 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9485#0 length = 814 sequences # 5

consensus_9485#1 length = 716 sequences # 1

consensusID : consensus_9485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 814
fasta sequence

                              [TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGC-GGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGTGCACGAGCACAAGGAACTCCTCACCCAGACAGCC]

[+] EMBL C29120               [TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTNCTCGTAGAATCGATTGGNTCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC17722             [  TCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGATCCACAACTTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB622845             [                     AGGGACGCCGTTGCTGCTCCTCCTTGAGGCAGAGCTCGCAGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCACGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGC GGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGTGCACGAGCACAAGGA                   ]
[+] EMBL CB669737             [                                                             GCCTTTTGCACTCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTGCTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGC GGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGTGCACGAGCACAAGGAACTCCTCACCCAGACAGCC]
[+] EMBL AU070873             [                                                                                                                                             AAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCAT                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_9485#0
TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGC
AGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTG
CTCGTAGAATCGATTGGATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGGGT
AGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCCCC
GCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCC
ATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCT
CAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCA
CATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGC
GGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCT
GCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCT
CTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGA
GTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGA
GCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCGGT
GCACGAGCACAAGGAACTCCTCACCCAGACAGCC

consensusID : consensus_9485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence

                              [GGACATCCAATTCACCTGCCCTTAAGCCAGATGACACAAACAGAAGAAGGAACTAAACAGTCTACTAAAAATGAAAAAAAAAAGATTAAAGACTATCTTAACCATGAATGGTCATCACCAGCAGCAACAGCAAGGAATCTAGTCGCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGGGCGGCGTCNTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAACATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA]

[+] EMBL CB622846             [GGACATCCAATTCACCTGCCCTTAAGCCAGATGACACAAACAGAAGAAGGAACTAAACAGTCTACTAAAAATGAAAAAAAAAAGATTAAAGACTATCTTAACCATGAATGGTCATCACCAGCAGCAACAGCAAGGAATCTAGTCGCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGGGCGGCGTCNTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATGGAGTCCGAGAACATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA]




>consensus_9485#1
GGACATCCAATTCACCTGCCCTTAAGCCAGATGACACAAACAGAAGAAGGAACTAAACAG
TCTACTAAAAATGAAAAAAAAAAGATTAAAGACTATCTTAACCATGAATGGTCATCACCA
GCAGCAACAGCAAGGAATCTAGTCGCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGG
GCGGCGTCNTCGGTGACATCCTCCCCGCTCCACAACTTCTCCAACATGCCGCTCCACCCG
GCCGCGGCGGCGTCGCCCACGCCGCCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGC
GGGCTGTGCCTCATCCATCTCCTGCTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTT
GATGCTGCGAACGCCGCGCTCGAGCACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCC
ATGCAGCGCGTGGCGGCCGCCTTCGCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGG
CCTGGGCTGTGCCGCGCGCTGCTCCTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCT
GCCGCGCGCCGCCACTTCCTCGACCTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCC
AACCAGTCGATACTGGAGGCCATGGAGTCCGAGAACATCGTGCACGTCATCGACCTCGGC
GGCGCCGACGCCACGCAATGGCTGGAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9485#0      TCTCTTCTCTTGGGACGGACTAGGGACGCTGCTGCTGCTCCTCCTTGAGGCAGAGCTCGC 60
consensus_9485#1      -----------------------GGACATCCAATTCACCTGCCCTTAAGCCAGATGACAC 37
                                             ****          *    **** ** ****   * *

consensus_9485#0      AGCCTTTTGCACCCTCACCTCGCGGGCTCCACTCATCACAAAACCTCAAATGCGCCCGTG 120
consensus_9485#1      AAACAGAAGAAGG--AACTAAACAG--TCTACTAAAAATGAAAAAAAAAA---------G 84
                      *  *    * *     **    * *  ** *** *  *  ***    ***         *

consensus_9485#0      CTCGTAGAATCGATTGG--ATCAAAGGTTGTAGCTTTTTTGTATTTCAAGGTTTGGGGGG 178
consensus_9485#1      ATTAAAGACTATCTTAACCATGAATGGTCATCACCAGCAGCAACAGCAAGGAATCTAGTC 144
                       *   *** *   **    ** ** ***  *  *        *   *****  *   *  

consensus_9485#0      GTAGCGCTGGCGAGGCTGATGGTCCAGGACGAAGGCTCGTCGTCGTCGGTGACATCCTCC 238
consensus_9485#1      GCGGCGGCGTCTCCTTCGCAGAAATACGGGAAGGGGGCGGCGTCNTCGGTGACATCCTCC 204
                      *  ***  * *      *  *    * *   * **  ** **** ***************

consensus_9485#0      CCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCG 298
consensus_9485#1      CCGCTCCACAACTTCTCCAACATGCCGCTCCACCCGGCCGCGGCGGCGTCGCCCACGCCG 264
                      ************************************************************

consensus_9485#0      CCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTG 358
consensus_9485#1      CCATGGATGGTGCGGGAGCTGCGTTCCGACGAGCGCGGGCTGTGCCTCATCCATCTCCTG 324
                      ************************************************************

consensus_9485#0      CTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAG 418
consensus_9485#1      CTCAACTGCGCCGCGGCGGCGGCGGCCGGGCGGCTTGATGCTGCGAACGCCGCGCTCGAG 384
                      ************************************************************

consensus_9485#0      CACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTC 478
consensus_9485#1      CACATCGCGTCGCTGGCGGCGCCCGACGGGGACGCCATGCAGCGCGTGGCGGCCGCCTTC 444
                      ************************************************************

consensus_9485#0      GCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTC 538
consensus_9485#1      GCGGAGGCGCTGGCGCGGCGCGCGCTGAGGGCGTGGCCTGGGCTGTGCCGCGCGCTGCTC 504
                      ************************************************************

consensus_9485#0      CTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGAC 598
consensus_9485#1      CTGCCCCGCGCGTCGCCCACGCCGGCCGAGGTCGCTGCCGCGCGCCGCCACTTCCTCGAC 564
                      ************************************************************

consensus_9485#0      CTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATG 658
consensus_9485#1      CTCTGCCCGTTCCTCCGCCTCGCCGGCGCCGCCGCCAACCAGTCGATACTGGAGGCCATG 624
                      ************************************************************

consensus_9485#0      GAGTCCGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTG 718
consensus_9485#1      GAGTCCGAGAACATCGTGCACGTCATCGACCTCGGCGGCGCCGACGCCACGCAATGGCTG 684
                      *********** ************************************************

consensus_9485#0      GAGCTCCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACCTGCGCCTCACGTCG 778
consensus_9485#1      GAGCTCCTCCACCTCCTCGCCGCGCGCCCCGA---------------------------- 716
                      ********************************                            

consensus_9485#0      GTGCACGAGCACAAGGAACTCCTCACCCAGACAGCC 814
consensus_9485#1      ------------------------------------