These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2334 fasta sequence [GGAGTTGCTTTATGATGCAGAAGACGTTATGGATGAGCTTGACTACTACCGGCTACAACAACAGATTGAAAAAGGCGAAGGTTGCAGTGCTGCTGCTGCTAATTATCCTGAGGCAAGCTATGCGTCTTCATCAACTCCATTTTCTCCTTATCAACTACTACACAGTGCCAGGAGCCAAATTACTGTTTGGGCCTCATATTGTAGAAAAAGGAAACAAGGAGAGGGAGACACAACTCATTGCACCATGCTGCCTCTTGAGATCAGACTTGATATTTCTAAGAGGATCAATGGAATAGTGAACGATTTACAGAAAGCTGGCAATTCTGTGAGGGGGATTCTTCTACCAGGTGTCTCACACCCAGCTTTAACATCAAATCAGAGGCAAAGCAAGATCAGGAACACACGCTTGACAACTTCTGTTCCTATTGAACTTAAGGTGTACGGGAGGGATGCGGACAGGGACAGGATAATAGAGATATTATTAAATGAGGAATCTAGTGATCTACGTGTTTTGCCAATAGTTGGCATTGGTGGTATTGGGAAGACAACACTCACTAGATTTATATACAGTGATCGAAGAATTATTGATCATTTTGATTTGCGAATTTGGATCTGTGTATCCACTTACTTCAATGAAGTGGACATAACACGTGAGATCTTAGAGCATATATTTGAAGATAAACAAGATAAACAGGAATTCAAAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTCTCGTATTGGATGATATGTGGAAGGAAAAAGACATGAGTGGATGGGATAAGCTGTTAGCTCCATTGAAACATAGTCAAGTAACCGGCTGTATGGTGCTAGCAACAACCCGAAAAAACTCAGTTGCAGAAATGATAGGAACAGTGAATGCATTCCAAATCAGTGGTCTGGATGAAAAGGAGTTTTGGCAGTTCTTCAAAGCATGTGCGTTTGGCAAGGAAAACTACGAGGGTGATCCTAGTTTGCAATCCATTGGGCGACAAATTGCTAAAGCACTAAAGGGCTGCCCACTAGCAGCACGAAGTGTTGGTGCACTTTTGAACAGAAATGTTAGCTATGAACATTGGAGGACAATTCGAGACAAATGGAAATCTCTTCAAATAAAAGATGATGATTTTATACCCATCCTGAAACTTAGCTATGATTATCTACCTTCTCACCTGCAGCGCTGTTTCTCCTACTGTTCTTTATTCCCAGAGGATCACCCGTTTAGTGCAGCAACTTTGGTTCAGGTTTGGATATCTCAAAATTTTGTGCAATGTGAAGATATAGGCAAGGGGTTGGAGGAGACAGGGTTGCAATAGCTAGGTAGTTTGGTGGATTTTGGATTTTTCCAAAAGGTTGACCGGCACTATGTTATGCATGATCTTATGCATGATTTAGCACAACAGGTTTCAGCAAAAGAATGTTATACGGTAAGAGGGTTGCAATCTAGCACAATTCGACAAGGTATTCGTCATTTGTCTATCATAACCACTGGTGATGATAATGATAAAAATACCAATTTTCCCACTGAGAAATATGAGATATTACAAAAGATTAGGCCTTTGCAAAAGTTGAGGAGCTTGATGCTTTTTGGAAGCAGCAGTGTATATCTATTGAAGTCCATACAAACTGTATGCAAGGAAGCCAAATGTTTACGGTTGTTAAGAGTTTGCGTCTTGAACGCTGACATCAGTGCTATACCCATAAACACATAATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTAACCCTCACCCTCCTCTTGCTTAAAGTAATCATTTGAATTTCCCTGCAGAGTGCAGACTGCATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGCACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTATGTACGCATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGCATAGAGTTCAATTGTGAATTTGTGACTGGTATAAAAAAAATTGTTTGCTTTGAGATCTATGCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTTGAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTAATTGATTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGGAATTAAGTCTTGTGTTTTGAGTTTAATAATTCGGTTTGAATCTTAGCATCGGGC] [+] EMBL AK106341 [GGAGTTGCTTTATGATGCAGAAGACGTTATGGATGAGCTTGACTACTACCGGCTACAACAACAGATTGAAAAAGGCGAAGGTTGCAGTGCTGCTGCTGCTAATTATCCTGAGGCAAGCTATGCGTCTTCATCAACTCCATTTTCTCCTTATCAACTACTACACAGTGCCAGGAGCCAAATTACTGTTTGGGCCTCATATTGTAGAAAAAGGAAACAAGGAGAGGGAGACACAACTCATTGCACCATGCTGCCTCTTGAGATCAGACTTGATATTTCTAAGAGGATCAATGGAATAGTGAACGATTTACAGAAAGCTGGCAATTCTGTGAGGGGGATTCTTCTACCAGGTGTCTCACACCCAGCTTTAACATCAAATCAGAGGCAAAGCAAGATCAGGAACACACGCTTGACAACTTCTGTTCCTATTGAACTTAAGGTGTACGGGAGGGATGCGGACAGGGACAGGATAATAGAGATATTATTAAATGAGGAATCTAGTGATCTACGTGTTTTGCCAATAGTTGGCATTGGTGGTATTGGGAAGACAACACTCACTAGATTTATATACAGTGATCGAAGAATTATTGATCATTTTGATTTGCGAATTTGGATCTGTGTATCCACTTACTTCAATGAAGTGGACATAACACGTGAGATCTTAGAGCATATATTTGAAGATAAACAAGATAAACAGGAATTCAAAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTCTCGTATTGGATGATATGTGGAAGGAAAAAGACATGAGTGGATGGGATAAGCTGTTAGCTCCATTGAAACATAGTCAAGTAACCGGCTGTATGGTGCTAGCAACAACCCGAAAAAACTCAGTTGCAGAAATGATAGGAACAGTGAATGCATTCCAAATCAGTGGTCTGGATGAAAAGGAGTTTTGGCAGTTCTTCAAAGCATGTGCGTTTGGCAAGGAAAACTACGAGGGTGATCCTAGTTTGCAATCCATTGGGCGACAAATTGCTAAAGCACTAAAGGGCTGCCCACTAGCAGCACGAAGTGTTGGTGCACTTTTGAACAGAAATGTTAGCTATGAACATTGGAGGACAATTCGAGACAAATGGAAATCTCTTCAAATAAAAGATGATGATTTTATACCCATCCTGAAACTTAGCTATGATTATCTACCTTCTCACCTGCAGCGCTGTTTCTCCTACTGTTCTTTATTCCCAGAGGATCACCCGTTTAGTGCAGCAACTTTGGTTCAGGTTTGGATATCTCAAAATTTTGTGCAATGTGAAGATATAGGCAAGGGGTTGGAGGAGACAGGGTTGCAATAGCTAGGTAGTTTGGTGGATTTTGGATTTTTCCAAAAGGTTGACCGGCACTATGTTATGCATGATCTTATGCATGATTTAGCACAACAGGTTTCAGCAAAAGAATGTTATACGGTAAGAGGGTTGCAATCTAGCACAATTCGACAAGGTATTCGTCATTTGTCTATCATAACCACTGGTGATGATAATGATAAAAATACCAATTTTCCCACTGAGAAATATGAGATATTACAAAAGATTAGGCCTTTGCAAAAGTTGAGGAGCTTGATGCTTTTTGGAAGCAGCAGTGTATATCTATTGAAGTCCATACAAACTGTATGCAAGGAAGCCAAATGTTTACGGTTGTTAAGAGTTTGCGTCTTGAACGCTGACATCAGTGCTATACCCATAAACACATAATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTAACCCTCACCCTCCTCTTGCTTAAAGTAATCATTTGAATTTCCCTGCAGAGTGCAGACTGCATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGCACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTATGTACGCATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGCATAGAGTTCAATTGTGAATTTGTGACTGGTATAAAAAAAATTGTTTGCTTTGAGATCTATGCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTTGAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTAATTGATTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGGAATTAAGTCTTGTGTTTTGAGTTTAATAATTCGGTTTGAATCTTAGCATCGGGC] consensusID : consensus_949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [TTTCATCTTCTGCTTATCATCTNATATGCNGTGCNAGACANAAAATTACTTGCTGNATCTCATCTGGCNGANAAAGGAAGCGNGNNGNGGTNGAGCCAACTGNTAGCNCCNTGCTGCCTCATGATNTCAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAACAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTCAGCTAGAGATCCCATGCCGAGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGTTCCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTTAATAAATGAGGGATCTAGTGATCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGGAAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGATTATTGATCATTTTGATTTGCAAATATGGATTTGTGTATCCACTAACTTCAATGAAGTAAGGTAACGCTTGAGATCTTAGAGCATGTATGTAAGGATAGACAAGAGTACAGAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTATCAAAAAA] [+] EMBL AU030779 [TTTCATCTTCTGCTTATCATCTNATATGCNGTGCNAGACANAAAATTACTTGCTGNATCTCATCTGGCNGANAAAGGAAGCGNGNNGNGGTNGAGCCAACTGNTAGCNCCNTGCTGCCTCATGATNTCAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAACAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTCAGCTAGAGATCCCATGCCGAGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGTTCCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTTAATAAATGAGGGATCTAGTGATCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGGAAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGATTATTGATCATTTTGATTTGCAAATATGGATTTGTGTATCCACTAACTTCAATGAAGTAAGGTAACGCTTGAGATCTTAGAGCATGTATGTAAGGATAGACAAGAGTACAGAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTATCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_949#0 GGAGTTGCTTTATGATGCAGAAGACGTTATGGATGAGCTTGACTACTACCGGCTACAACA 60 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ACAGATTGAAAAAGGCGAAGGTTGCAGTGCTGCTGCTGCTAATTATCCTGAGGCAAGCTA 120 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TGCGTCTTCATCAACTCCATTTTCTCCTTATCAACTACTACACAGTGCCAGGAGCCAAAT 180 consensus_949#1 --------------TTTCATCTTCTGCTTATCATCTNATATGCNGTGCNAGACANAAAAT 46 * *** **** ******* ** ** * **** ** **** consensus_949#0 TACTGTTTGGGCCTCATATTGTAGAAAAAGGAAACAAGGAGAGGGAGACACAACTCATTG 240 consensus_949#1 TACTTGCTGNATCTCATCTGGCNGANAAAGGAAGCGNGNNGNGGTNGAGCCAACTGNTAG 106 **** ** ***** * * ** ******* * * * ** ** ***** * * consensus_949#0 CACCATGCTGCCTCTTGAGATCAGACTTGATATTTCTAAGAGGATCAATGGAATAGTGAA 300 consensus_949#1 CNCCNTGCTGCCTCATGATNTCAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAA 166 * ** ********* *** *** ** *** ****************** **** ***** consensus_949#0 CGATTTACAGAAAGCTGGCAATTCTGTGAGGGGGATTCTTCTACCAGGTGTCTCACACCC 360 consensus_949#1 CAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTCAGCTAGAGATCCCATGCCG 226 * **** * **** ************* * *** ****** * ** ** ** ** consensus_949#0 AGCTTTAACATCAAATCAGAGGCAAAGCAAGATCAGGAACACACGCTTGACAACTTCTGT 420 consensus_949#1 AGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGT 286 ** *** ***************** ** * * * *********** ************* consensus_949#0 TCCTATTGAACTTAAGGTGTACGGGAGGGATGCGGACAGGGACAGGATAATAGAGATATT 480 consensus_949#1 TCCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTT 346 *********** ******** *** * ***** ** * ****************** ** consensus_949#0 ATTAAATGAGGAATCTAGTGATCTACGTGTTTTGCCAATAGTTGGCATTGGTGGTATTGG 540 consensus_949#1 AATAAATGAGGGATCTAGTGATCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGG 406 * ********* ************ * *** * ************************** consensus_949#0 GAAGACAACACTCACTAGATTTATATACAGTGATCGAAGAATTATTGATCATTTTGATTT 600 consensus_949#1 AAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGATTATTGATCATTTTGATTT 466 *********** ******** ***** * **** *** ******************** consensus_949#0 GCGAATTTGGATCTGTGTATCCACTTACTTCAATGAAGTGGACATAACACGTGAGATCTT 660 consensus_949#1 GCAAATATGGATTTGTGTATCCACTAACTTCAATGAAGTA-AGGTAACGCTTGAGATCTT 525 ** *** ***** ************ ************* * **** * ********* consensus_949#0 AGAGCATATATTTGAAGATAAACAAGATAAACAGGAATTCAAAGATGTTAGCAATTTCAA 720 consensus_949#1 AGAGCATGTATGTAAGGATAGACAAGA---------GTACAGAGATGTTAGCAATTTCAA 576 ******* *** * * **** ****** * ** ****************** consensus_949#0 TGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTCTCGTATTGGA 780 consensus_949#1 TGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTATCAAAAAA-- 634 ************************************************* ** * consensus_949#0 TGATATGTGGAAGGAAAAAGACATGAGTGGATGGGATAAGCTGTTAGCTCCATTGAAACA 840 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TAGTCAAGTAACCGGCTGTATGGTGCTAGCAACAACCCGAAAAAACTCAGTTGCAGAAAT 900 consensus_949#1 ------------------------------------------------------------ consensus_949#0 GATAGGAACAGTGAATGCATTCCAAATCAGTGGTCTGGATGAAAAGGAGTTTTGGCAGTT 960 consensus_949#1 ------------------------------------------------------------ consensus_949#0 CTTCAAAGCATGTGCGTTTGGCAAGGAAAACTACGAGGGTGATCCTAGTTTGCAATCCAT 1020 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TGGGCGACAAATTGCTAAAGCACTAAAGGGCTGCCCACTAGCAGCACGAAGTGTTGGTGC 1080 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ACTTTTGAACAGAAATGTTAGCTATGAACATTGGAGGACAATTCGAGACAAATGGAAATC 1140 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TCTTCAAATAAAAGATGATGATTTTATACCCATCCTGAAACTTAGCTATGATTATCTACC 1200 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TTCTCACCTGCAGCGCTGTTTCTCCTACTGTTCTTTATTCCCAGAGGATCACCCGTTTAG 1260 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TGCAGCAACTTTGGTTCAGGTTTGGATATCTCAAAATTTTGTGCAATGTGAAGATATAGG 1320 consensus_949#1 ------------------------------------------------------------ consensus_949#0 CAAGGGGTTGGAGGAGACAGGGTTGCAATAGCTAGGTAGTTTGGTGGATTTTGGATTTTT 1380 consensus_949#1 ------------------------------------------------------------ consensus_949#0 CCAAAAGGTTGACCGGCACTATGTTATGCATGATCTTATGCATGATTTAGCACAACAGGT 1440 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TTCAGCAAAAGAATGTTATACGGTAAGAGGGTTGCAATCTAGCACAATTCGACAAGGTAT 1500 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TCGTCATTTGTCTATCATAACCACTGGTGATGATAATGATAAAAATACCAATTTTCCCAC 1560 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TGAGAAATATGAGATATTACAAAAGATTAGGCCTTTGCAAAAGTTGAGGAGCTTGATGCT 1620 consensus_949#1 ------------------------------------------------------------ consensus_949#0 TTTTGGAAGCAGCAGTGTATATCTATTGAAGTCCATACAAACTGTATGCAAGGAAGCCAA 1680 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ATGTTTACGGTTGTTAAGAGTTTGCGTCTTGAACGCTGACATCAGTGCTATACCCATAAA 1740 consensus_949#1 ------------------------------------------------------------ consensus_949#0 CACATAATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTA 1800 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ACCCTCACCCTCCTCTTGCTTAAAGTAATCATTTGAATTTCCCTGCAGAGTGCAGACTGC 1860 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGC 1920 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTAT 1980 consensus_949#1 ------------------------------------------------------------ consensus_949#0 GTACGCATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGC 2040 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ATAGAGTTCAATTGTGAATTTGTGACTGGTATAAAAAAAATTGTTTGCTTTGAGATCTAT 2100 consensus_949#1 ------------------------------------------------------------ consensus_949#0 GCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTT 2160 consensus_949#1 ------------------------------------------------------------ consensus_949#0 GAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTA 2220 consensus_949#1 ------------------------------------------------------------ consensus_949#0 ATTGATTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGG 2280 consensus_949#1 ------------------------------------------------------------ consensus_949#0 AATTAAGTCTTGTGTTTTGAGTTTAATAATTCGGTTTGAATCTTAGCATCGGGC 2334 consensus_949#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||