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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 854 fasta sequence
[GGACTGCTCAAGTTGCTACAGTGGACCATATTAAACAGAAATGTACAAAATTGAGGCCAGCTGCTGATGAGGAGCTTCCTTCAGCATACATTGAAGATTTCAGGAGTGCCCTGGATGTTGAATTATCCAAATATGTTGGTGAAGCTTATCCAAAAGGGGTGTGTGCTGTTTATTGTACCAGCGGAAAAGATATAGAGGGACCAGGAGTTGATTTTCGTTTTGCAGCAGTTATTTCTGCTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGA-TTACAGCTTGTCGAAATTAAA-GGGAAAATACAGGTAGGTGCTCATTATTTTG-AAGAGGGAAATG-TGCAGCTGGATACTAAC-ATCGA-TTGCAAGGATTCCACCATATTGCAGTCT-CCTGAGGAATGTGC-AGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACA-TGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGA-TTTTTTTTTATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAAATCAAGAACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAATATATGATATC-TGAATGTTGAC]
[+] EMBL AK108552 [GGACTGCTCAAGTTGCTACAGTGGACCATATTAAACAGAAATGTACAAAATTGAGGCCAGCTGCTGATGAGGAGCTTCCTTCAGCATACATTGAAGATTTCAGGAGTGCCCTGGATGTTGAATTATCCAAATATGTTGGTGAAGCTTATCCAAAAGGGGTGTGTGCTGTTTATTGTACCAGCGGAAAAGATATAGAGGGACCAGGAGTTGATTTTCGTTTTGCAGCAGTTATTTCTGCTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGA TTACAGCTTGTCGAAATTAAA GGGAAAATACAGGTAGGTGCTCATTATTCTG AAGAGGGAAATG TGCAGCTGGATACTAAC ATCGA TTGCAAGGATTCCACCATATTGCAGTCT CCTGAGGAATGTGC AGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACA TGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGA TTTTTTTTTATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAAATCAAGAACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAATATATGATATC TGAATGTTGAC]
[+] EMBL CA765564 [ GTTTATTGTACCAGCGGAAAAGATATAGAGGGACCAGGAGCTGATTTTCGTTTTGCAGCAGTTATTTCTGCTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGA TTACAGCTTGTCGAAATTAAA GGGAAAATACAGGTAGGTGCTCATTATTTTG AAGAGGGAAATG TGCAGCTGGATACTAAC ATCGA TTGCAAGGATTCCACCATATTGCAGTCT CCTGAGGAATGTGC AGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACA TGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGATTTTTTTTTTATCTCCA ]
[+] EMBL BM037960 [ gaGGANTTNCAGCTTGTCGAAATTAAAGGGGAAAATACAGTTTAGTGCTCATTANTTTGAAAGAGGGAAATGNTCCAGCTGGATACTTACNTTCGATTTCCAAGGATTCCACCATATGCCAGTCTCCCTGAGGAATGTCCTAGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACACTGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGA TTTTTTTTTATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAAATCAAGAACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAATATATGATATCNTGAAaaaaaaa]
consensusID : consensus_9494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 768 fasta sequence
[TGCAATATTTTGAGAATTATGTGAAATGATGATTTAACGTGCTTGGATTTTTGTAAGCTCTAAAATTTTAAGTGAGGATAAACTATATAAGCATATAGGATATTATAAAAAGTGAAGGAGAGGTATATTGAAATATTATGTGGATTATGTGGGATGATAATTTAATTAACATGCTTGCATTTTAAAGTTCTAAAACTTAATAAATTAGCATGCTTGCATGAGATTTAAGATGTATTAAATGTTAGTGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAGATGTAGTGGGCTTTAACTTTATAGAAATATAGGATTAATTCCTATAGAATGTCATGATGCAGGATGTCATTAATAATCCTCCAAGCTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACTAAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTCGTATCTTTCTTTCAGCGCTTCGCTGGGACTTGGAATGTTTGTTGTTTTTCAGTGCTTTCATGGCCATGGAACTCAGAATGTCTCCAACGTGCAAATTCTTGGTTGTGATCTAGAAGATGGTTATTTGTTTGAAACAATGGAAGCACTTGATGTTCCCTTAGCATATACACTTGTGAGCTTGTGTTGATAGAATTGTAAAGCTTACATATGTTTTAGTTCTACTATTATTTTGAANAGGGAAATGTGCAGCTGGATGCTAACATCGGTTGCAAGGACTGAAGTGTACGTACCAATGAAAAAAAAAAAAAAAA]
[+] EMBL AU075621 [TGCAATATTTTGAGAATTATGTGAAATGATGATTTAACGTGCTTGGATTTTTGTAAGCTCTAAAATTTTAAGTGAGGATAAACTATATAAGCATATAGGATATTATAAAAAGTGAAGGAGAGGTATATTGAAATATTATGTGGATTATGTGGGATGATAATTTAATTAACATGCTTGCATTTTAAAGTTCTAAAACTTAATAAATTAGCATGCTTGCATGAGATTTAAGATGTATTAAATGTTAGTGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAGATGTAGTGGGCTTTAACTTTATAGAAATATAGGATTAATTCCTATAGAATGTCATGATGCAGGATGTCATTAATAATCCTCCAAGCTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACTAAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTCGTATCTTTCTTTCAGCGCTTCGCTGGGACTTGGAA ]
[+] EMBL AU075622 [ GTATTAAATGTTAGTGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAGATGTAGTGGGCTTTAACTTTATAGAAATATAGGATTAATTCCTATAGAATGTCATGATGCAGGATGTCATTAATAATCCTCCAAGCTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACTAAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTTGTATCTTTCTTTCAGCGCTTCGCTGGGACTTGGAATGTTTGTTGTTTTTCAGTGCTTTCATGGCCATGGAACTCAGAATGTCTCCAACGTGCAAATTCTTGGTTGTGATCTAGAAGATGGTTATTTGTTTGAAACAATGGAAGCACTTGATGTTCCCTTAGCATATACACTTGTGAGCTTGTGTTGATAGAATTGTAAAGCTTACATATGTTTTAGTTCTACTATTATTTTGAANAGGGAAATGTGCAGCTGGATGCTAACATCGGTTGCAAGGACTGAAGTGTACGTACCAATGAAAAAAAAAAAAAAAA]
consensusID : consensus_9494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTGGAAGCAATTACGGATATCTCACCATAAGTTTCTTAGTTGAATTGTCTCACCATATTTCTTGGGGAGCTCATATGATGATAACATTGGCATATATACTCTAAGGGTAATAGACTTGCCACTGAAAATCATAGGAATCTCTCTCATTGGTACGTACACTTCAGTCCTTGCAACCGATGTTAGCATCCAGCTGCACATTTCCCTCTTCAAAATAATAGTAGAACTAAAACATATGTAAGCTTTACAATTCTATCAACACAAGCTCACAAGGGTATATGCTAAGGGAACATCGAGGGCTTCCATTGTTTCAAACAAATAACTATGTTCTAGATCACAACCAAAAATTTGCACGTTGGAAACATTCTGAGTTCCATGGCCATGAAAGCACTGAAAAACAACAAACGTTCCAAGTCCCAGCGAAGCGCGCGGAATCGCTGGTGCAAACAATATCCATCTGGCTAGCGGAGCAAACGATTTGTTGTCGTCGCCGTCGTCGTTGCCTCCTCCTCCGCCACGCCTCCTAATTAAATCCCGGGACTGGTTGGCCGGTGTCTCCCCCCCTTG]
[+] EMBL CA762175 [TTTTTTTTTTTTTTTTTTTTTTTTGGAAGCAATTACGGATATCTCACCATAAGTTTCTTAGTTGAATTGTCTCACCATATTTCTTGGGGAGCTCATATGATGATAACATTGGCATATATACTCTAAGGGTAATAGACTTGCCACTGAAAATCATAGGAATCTCTCTCATTGGTACGTACACTTCAGTCCTTGCAACCGATGTTAGCATCCAGCTGCACATTTCCCTCTTCAAAATAATAGTAGAACTAAAACATATGTAAGCTTTACAATTCTATCAACACAAGCTCACAAGGGTATATGCTAAGGGAACATCGAGGGCTTCCATTGTTTCAAACAAATAACTATGTTCTAGATCACAACCAAAAATTTGCACGTTGGAAACATTCTGAGTTCCATGGCCATGAAAGCACTGAAAAACAACAAACGTTCCAAGTCCCAGCGAAGCGCGCGGAATCGCTGGTGCAAACAATATCCATCTGGCTAGCGGAGCAAACGATTTGTTGTCGTCGCCGTCGTCGTTGCCTCCTCCTCCGCCACGCCTCCTAATTAAATCCCGGGACTGGTTGGCCGGTGTCTCCCCCCCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9494#0 GGACTGCTCAAGTTGCTACAGTGGACCATATTAAACAGAAATGTACAAAATTGAGGCCAG 60
consensus_9494#1 -----------------------------------TGCAATATTTTGAGAATTATGTGAA 25
consensus_9494#2 ------------------------------------------------------------
consensus_9494#0 CTGCTGATGAGGAGCTTCCTTCAGCATACATTGAAGATTTCAGGAGTGCCCTGGATGTTG 120
consensus_9494#1 ATGATGATTT--AACGTGCTTGGATTT---TTGTAAGCTCTAAAATTTTAAGTGAGGATA 80
consensus_9494#2 -----------------------------------------------------TTTTTTT 7
*
consensus_9494#0 AATTATCCAAATATGTTGGTGAAGCTTATCCAAAAGGGGT-GTGTGCTGTTTA-TTGTAC 178
consensus_9494#1 AACTATATAAGCATATAGGATA---TTAT--AAAAAGTGA-AGGAGAGGTATA-TTGAAA 133
consensus_9494#2 TTTTTTTTTTTTTTTTTGGAAGCAATTACGGATATCTCACCATAAGTTTCTTAGTTGAAT 67
* * * * ** *** * * * ** *** *
consensus_9494#0 CAGCGGAAAAGATATAGAGGGACCAGGAGTTGATTTTCGT-TTTGCAGCAGTTATTTCTG 237
consensus_9494#1 TATTATGTGGATTAT-GTGGGATGATAATTTAATTAACATGCTTGCATTTTAAAGTTCTA 192
consensus_9494#2 TGTCTCACCATATTTCTTGGGGAGCTCATATGATGATAACATTGGCATATATA--CTCTA 125
* * *** * * ** * *** ***
consensus_9494#0 CTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGG 297
consensus_9494#1 AAACTTAATAAATT----AGCATGCTTGCA-TGAGATTTAAGATGTA--TTAAATGTTAG 245
consensus_9494#2 AGGGT-------------AATAGACTTGCCACTGAAAATCATAGGAATCTCTCTCATTGG 172
* * * **** * * * * * *
consensus_9494#0 AATTCATAGATGGATTACAGCTTGTCGAAATTAAAGGGAAAATACAGGTAGGTGCTCATT 357
consensus_9494#1 TGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAG-----ATGTAG-TGGGCTTTAACT 299
consensus_9494#2 TACGTACACTTCAGTCCTTGCA-ACCGATGTTAGC------ATCCAGCTGCACATTTCCC 225
* ** ** ** ** ** * *
consensus_9494#0 ATTTTGAAGAGGGAAATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATAT 417
consensus_9494#1 TTATAGAAATATAGGATTAATTCCTATAGAATGTCATGA--TGCA-GGATGTCATTA--- 353
consensus_9494#2 TCTTCAAAATAATAGTAGAACTAAAACATA-TGTAAGCT-TTACA---ATTCTATCAA-- 278
* ** * * * * * ** ** * *
consensus_9494#0 TGCAGTCTCCTGAGGA-ATGTGCAGTATCAATAACTAACATCATT--CGGCATCATGAGT 474
consensus_9494#1 -ATAATCCTCCAAG---CTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACT 409
consensus_9494#2 CACAAGCTCACAAGGGTATATGCTAAGGGAACATCGAGGGCTTCCA--------TTGTTT 330
* * ** * * * ** ** *
consensus_9494#0 CAGAATATTTGTCATCACTTGAGGAATCATACATGAATTTGTCTGATGCAACCTTCAAGG 534
consensus_9494#1 AAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTCGTATCTT----- 464
consensus_9494#2 CAAACAAATAACTATGTTCTAGATCACAAC-CAAAAATTTGCACGTTGGAAACAT----- 384
* * * * * * * * *
consensus_9494#0 ATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCC 594
consensus_9494#1 -TCTTTCAGCG--CTTCGCTGGGACTTGGAATGTTTGTT-GTTTTTCAGTGCTTTCATGG 520
consensus_9494#2 ---TCTGAG------TTCCATGGCCATGAAAGCACTGAAAAACAACAAACGTTCCAAGTC 435
* * * * * * * * *
consensus_9494#0 TCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGT 654
consensus_9494#1 CCA-TGGAACTCAGAATGTCTCCAACGTGCAAATTCTTGGTTGT--GATCTAGAAGATGG 577
consensus_9494#2 CCAGCGAAGCGCGCGGAATCGCTG--GTGCAAACAATATCCATCTGGCTAGCGGAGCAAA 493
** * ** * * * * * *
consensus_9494#0 CAGTTCATTAGATTAGCTTTGATATGGATTTTTTTTTATCTCCATGCTATGTGTTGTTCT 714
consensus_9494#1 TTATTTGTTTGA--AACAATG----GAAGCACTTGATGTTCCCTTAGCATATACACTTGT 631
consensus_9494#2 CGATTTGTTGTCGTCGCCGTC------GTCGTTGCCTCCTCCTCCGCCACGCCTCCTAAT 547
** ** * * * * * * * *
consensus_9494#0 GTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTC 774
consensus_9494#1 G-AGCTTGTGTTGATAGAATTGTAAAGCTTACATATGTTTTAGTTCTACTATTAT-TTTG 689
consensus_9494#2 T-AAATCCCGGGACTGGTTGGCCGGTGTCTCCCCCCCTTG-------------------- 586
* * * * * * *
consensus_9494#0 CACATATCAGTGTAAATCAAGA-ACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAAT 833
consensus_9494#1 AANAGGGAAATGTGCAGCTGGATGCTAACATCGGTTGCAAGGA--CTGAAGTGTACGTAC 747
consensus_9494#2 ------------------------------------------------------------
consensus_9494#0 ATATGATATCTGAATGTTGAC 854
consensus_9494#1 CAATGAAAAAAAAAAAAAAAA 768
consensus_9494#2 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||