|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1277 fasta sequence
[ACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCCCCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGGGAAGGGACCAGAGCAGCCACGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCGNCGCAGAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGATGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCA-NGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCAC-TTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACNCCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C91853 [ACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCCCCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGGGAAGGGACCAGAGCAGCCACGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCGNCGCAGAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGATGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCA NGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTTGCGGGACAACAAATTCTGCTACTACAACAACTACAACAACTTCCAGCCCCGGAATTTTTG AAGTGTTNCCGCCGtaatttga ]
[+] EMBL BP184975 [ acgaGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCAGCGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCAC TTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTT ]
[+] EMBL BP184488 [ GCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCCCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCG CAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTGCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTtc ]
[+] EMBL AU075672 [ CACCAAGAGTCTGGCCGACCCGGACCTGCACTTTCGANTGGCC CCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACNCCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AU225768 [ ccgctGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAgcggc ]
consensusID : consensus_9495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[ACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTA]
[+] EMBL AU174626 [ACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9495#0 ACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCC 60
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGGGAAGGGACCAGAGCAGCCA 120
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCGNCGCAGAGTTC 180
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 GCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGATGCCACAGCCT 240
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 GGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCANGGCGGCGG 300
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACA 360
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 ACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCA 420
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 AGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTT 480
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGA 540
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 AGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCC 600
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 TCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGA 660
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 AGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCA 720
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGG 780
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 ACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTC 840
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 TGGCCGACCCGGACCTGCACTTCGA-GTGGCCGCCGCCGGCGTTCGACATGGCGTCCTAC 899
consensus_9495#1 ------ACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGCGTTCGACATGGCGTCCTAC 54
** ** * ** *** ** ************************
consensus_9495#0 TGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCA 959
consensus_9495#1 TGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCA 114
************************************************************
consensus_9495#0 TGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTA 1019
consensus_9495#1 TGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTA 174
************************************************************
consensus_9495#0 CNCCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGG 1079
consensus_9495#1 CACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGG 234
* **********************************************************
consensus_9495#0 TGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGA 1139
consensus_9495#1 TGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGA 294
************************************************************
consensus_9495#0 GGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGG 1199
consensus_9495#1 GGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGG 354
************************************************************
consensus_9495#0 GCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAA 1259
consensus_9495#1 GCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTA----------------------- 391
*************************************
consensus_9495#0 AAAAAAAAAAAAAAAAAA 1277
consensus_9495#1 ------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||