These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTTGTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCCGGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATAACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC] [+] EMBL CF313535 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTTGTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCCGGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATAACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC] consensusID : consensus_950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATCCCTCAAAACTTTTTCCCCTTTCCCTTTTTTTGACAAAAACAAAAAAAGGGGGGGGTCCTTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGAATTTTTTTAAACCCGCCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATACCAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGTGGGCCCCCC] [+] EMBL CF316145 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATCCCTCAAAACTTTTTCCCCTTTCCCTTTTTTTGACAAAAACAAAAAAAGGGGGGGGTCCTTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGAATTTTTTTAAACCCGCCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATACCAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGTGGGCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_950#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_950#1 -----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49 ************************************************* consensus_950#0 GGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTT 120 consensus_950#1 -------------TTTTTTG--CCCCAAAAAAA----TCCCTCAA--------------- 75 ******* ******* *** *** consensus_950#0 GTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCC 180 consensus_950#1 -----------AACTTTTTCCCCT------TTCCCTTTTTTTGACAAAAACAAAAAA--- 115 *** *** *** * **** **** * **** * consensus_950#0 GGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGA 240 consensus_950#1 AGGGGGGGGTCC----------TTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGA 165 *********** ***** ******* * **** ********** ***** consensus_950#0 ATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAA 300 consensus_950#1 ATTTTTTTAAACCCGCCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAA 225 **************** ** *** **** ******************** ********** consensus_950#0 ACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATA 360 consensus_950#1 ACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATA 285 ************************************************************ consensus_950#0 ACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTT 420 consensus_950#1 CCAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTT 345 ******* *** **************************** ****************** consensus_950#0 ATTGGGGGGGGCCCCCC 437 consensus_950#1 ATTGGGGTGGGCCCCCC 362 ******* ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||