These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 485 fasta sequence [TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC-TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCC-TCGTGCAGT-GGATCGACTTGCAAGC-TCGCCGGCGCGCTCGGCCTCCTNAAGATCATGATCTACAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAGCAATTTTA] [+] EMBL AU174436 [TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTTCGTGCAGTNGGATCGACTTGCAAGC TCGCCGGCGCGCTCGGCCTCCTNAAGATCATGATCTAC ] [+] EMBL AU077584 [ GGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGA NACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCC TCGTGCAGT GGATCGAC TGCAAGC TC ] [+] EMBL OSC100511 [ ACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAG ACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTNAGCNATGCGGAGGAGGTTCCAGGACTCCGTNAAGGCCCTCGAGGCCGACATCNAGCACGCCAATNAGCTTNGCGTCGGAGTTCTTTCGG ] [+] EMBL AU077555 [ AAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGA NACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATTAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACANCGCCGTCG GCACTTCC TCGTGCAGT TGATC NCTT CAAACTTAGCCGGCGCGTTCGGCCTCCTCAAGATCATGATCTNCAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAGCAATTTTA] [+] EMBL CF312034 [ AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTA GTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCC TCGTGCAGT GGATCGACT ] consensusID : consensus_9501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTCGCCGGTCGCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCTCTTTTGCAGGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT] [+] EMBL CB643585 [GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTCGCCGGTCGCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCTCTTTTGCAGGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9501#0 TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAG 60 consensus_9501#1 -------GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAG 53 ****** ********************************************** consensus_9501#0 AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAG 120 consensus_9501#1 AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAG 113 ************************************************************ consensus_9501#0 CGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCG 180 consensus_9501#1 CGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCG 173 ************************************************************ consensus_9501#0 GCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCC 240 consensus_9501#1 GCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCC 233 ************************************************************ consensus_9501#0 GTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTG-GCGTCGGAGTTCTTGCG 299 consensus_9501#1 GTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTC 293 ****************************************** * ** ** consensus_9501#0 G--GATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTC 357 consensus_9501#1 GCCGGTCGCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCT 353 * * * ** * * * * * * ** * ** * * * ** * ** consensus_9501#0 CTCGTGCAGTGGATCGACTTGCAAGCTCGCCGGCGCGCTCGGCCTCCTNAAGATCATGAT 417 consensus_9501#1 CTTTTGCAGGGCGTCGG------AGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGAT 407 ** ***** * *** ** ** * * ** * **** *** consensus_9501#0 CTACAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAG 477 consensus_9501#1 GCG-GATGGCGTACAGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT--------- 457 * ** **** ** * * * ** * * * ** consensus_9501#0 CAATTTTA 485 consensus_9501#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||