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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence
[CCATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTGCACTCGCGACGCGA-GGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC-GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC-TGCTGAAGTAGTCTCGCCTTCG-AATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGATCTAA]
[+] EMBL AK100843 [CCATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTGCACTCGCGACGCGA GGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC TGCTGAAGTAGTCTCGCCTTCG AATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAA ]
[+] EMBL AK071662 [ CATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTGCACTCGCGACGCGA GGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC TGCTGAAGTAGTCTCGCCTTCG AATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGATCT ]
[+] EMBL AU077734 [ TCTCTCCAGAGGCCTCCATNCAAAGCCGNGCAAAACGCCACNACNCACACCACGCTGCNCTCGCGACGCGANGGNACNCCGCCGGCGG GACGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGA CTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACNCGCTGATCGATCGATCGATCGGTCCATGACGGGCTCCACGTACGTANGGCAACCAGCAAAGANAGTACGCTGGCTTGCTGAAGTAGTCTCGCCTTCGAAATCATGAATTAAACT ]
[+] EMBL AU077735 [ CTCGTCNTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC TGCTGAAGTAGTCTCGCCTTCG AATCATGAATTAACCTG TCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGAaaaaa]
consensusID : consensus_9502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence
[CTGTCGCGGGCGCCACCCCGCATCTTCTCGAGCCGCGTCCGCTTCCTCGATCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCGCCCTTCACCCGTCGCCGGCACCCGCTGATCGAT-CGATCGATCCA-TGACGG-CTC---CACGT-ACGTACGGCAA-CCAA-CANAAGACA-GTACGCTGGCTGAAGTTGTCTCGCCTTCGTCTCGTAAATTAA-CTTGTTTGTAGCCACGGGTTGCTA-GCTGCCTAGCTAGCTGTTGTTCTTGCAGC-TTAATTAATTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACCGAGTCACGGTCACGGCCAGTTGACTCGGAGCGAGAAGATTTGTAAATCTGGGT-GAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA]
[+] EMBL BQ908651 [CTGTCGCGGGCGCCACCCCGCATCTTCTCGAGCCGCGTCCGCTTCCTCGATCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCGCCCTTCACCCGTCGCCGGCACCCGCTGATCGAT CGATCGATCCA TGACGG CTC CACGT ACGTACGGCAA CCAA CANAAGACA GTACGCTGGCTGAAGTTGTCTCGCCTTCGTCTCGTAAATTAA CTTGTTTGTAGCCACGGGTTGCTA GCTGCCTAGCTAGCTGTTGTTCTTGCAGC TTAATTAATTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACCGAGTCACGGTCACGGCCAGTTGACTCGGAGCGAGAAGATTTGTAAATCTGGGT GAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA]
[+] EMBL BQ909179 [ GATCCGATCGATCCACTGACGGCCTCCCACACGTAACGTACGGCAACCCAACCACAAGACACGTACGCTGGCTGAAGTTGTCTCGCCTTCGTCTCGTAAATTAACCTTGTTTGTAG CACGGGTTGCTAGGCTGCCTAGCTAGCTGTTGTTCTTGCAGCGTTAATTAATTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACCGAGTCACGGTCACGGCCAGTTGACTCGGAGCGAGAAGATTTGTAAATCTGGGTCGAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9502#0 CCATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTG 60
consensus_9502#1 ------------------------------------------------------------
consensus_9502#0 CACTCGCGACGCGAGGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGA 120
consensus_9502#1 ------------------------------------------------------------
consensus_9502#0 GAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCG 180
consensus_9502#1 ------------------------------------------------------------
consensus_9502#0 GCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGC 240
consensus_9502#1 ---------------------------CTGTCGCGGGCGCCACCCCGCATCTTCTCGAGC 33
************** ************ ** **
consensus_9502#0 CGCGTCCGCTTCCTCG----TCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCC 296
consensus_9502#1 CGCGTCCGCTTCCTCGATCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCC 93
**************** ****************************************
consensus_9502#0 GCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATC 356
consensus_9502#1 GCTCTCTCCCCCGCCGCCCTTCACC--CGTCGCCGGCACCCGCTGATCGATCGATCGAT- 150
*************** ********* ** *****************************
consensus_9502#0 GGTCCATGACGGCTCCACGTACGTACGGCAACCAGCAAA-GACAGTACGCTGGCTGCTGA 415
consensus_9502#1 ---CCATGACGGCTCCACGTACGTACGGCAACCAACANAAGACAGTACGCTGGCTG---A 204
******************************* ** * **************** *
consensus_9502#0 AGTAGTCTCGCCTTCGAATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGT 475
consensus_9502#1 AGTTGTCTCGCCTTCGTCTCGTAAATTAACTTGTTTG----------------------- 241
*** ************ ** * ******* ** * *
consensus_9502#0 GATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGT-AA 534
consensus_9502#1 -----TAGCCACGGGTTGCTAGCTGCCTAGCTAGCTGTTGT--TCTTGCAGCTTAATTAA 294
* * * * ****** * ******** ****** ************ * **
consensus_9502#0 TTAAT-TAATCATTTGCTTAGCTTCTGATCCTGAAAAA-GCTTGCATGTAGTTGTAGCCC 592
consensus_9502#1 TTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCC 354
*** * ** ***************************** *********************
consensus_9502#0 AGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGT 652
consensus_9502#1 AGCGACCGAGTCACGGTCACGG--------CCAGTTGACTCGGAGCGAGAAGATTTGTA- 405
****** **** ********** ************************ ***
consensus_9502#0 AATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGATCTAA 699
consensus_9502#1 AATCTGGGTGAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA----- 447
****** ****** ****** ***** * ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||