These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence [CCATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTGCACTCGCGACGCGA-GGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC-GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC-TGCTGAAGTAGTCTCGCCTTCG-AATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGATCTAA] [+] EMBL AK100843 [CCATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTGCACTCGCGACGCGA GGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC TGCTGAAGTAGTCTCGCCTTCG AATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAA ] [+] EMBL AK071662 [ CATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTGCACTCGCGACGCGA GGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC TGCTGAAGTAGTCTCGCCTTCG AATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGATCT ] [+] EMBL AU077734 [ TCTCTCCAGAGGCCTCCATNCAAAGCCGNGCAAAACGCCACNACNCACACCACGCTGCNCTCGCGACGCGANGGNACNCCGCCGGCGG GACGCGAGGAGGAGAAGGAGAAGGAGAGAGAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGA CTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGCCGCGTCCGCTTCCTCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACNCGCTGATCGATCGATCGATCGGTCCATGACGGGCTCCACGTACGTANGGCAACCAGCAAAGANAGTACGCTGGCTTGCTGAAGTAGTCTCGCCTTCGAAATCATGAATTAAACT ] [+] EMBL AU077735 [ CTCGTCNTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATCGGTCCATGAC GGCTCCACGTACGTACGGCAACCAGCAAAGACAGTACGCTGGC TGCTGAAGTAGTCTCGCCTTCG AATCATGAATTAACCTG TCGCGCGTGTGCATAGTTCAACTCGTGATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGTAATTAATTAATCATTTGCTTAGCTTCTGATCCTGAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGTAATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGAaaaaa] consensusID : consensus_9502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence [CTGTCGCGGGCGCCACCCCGCATCTTCTCGAGCCGCGTCCGCTTCCTCGATCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCGCCCTTCACCCGTCGCCGGCACCCGCTGATCGAT-CGATCGATCCA-TGACGG-CTC---CACGT-ACGTACGGCAA-CCAA-CANAAGACA-GTACGCTGGCTGAAGTTGTCTCGCCTTCGTCTCGTAAATTAA-CTTGTTTGTAGCCACGGGTTGCTA-GCTGCCTAGCTAGCTGTTGTTCTTGCAGC-TTAATTAATTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACCGAGTCACGGTCACGGCCAGTTGACTCGGAGCGAGAAGATTTGTAAATCTGGGT-GAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA] [+] EMBL BQ908651 [CTGTCGCGGGCGCCACCCCGCATCTTCTCGAGCCGCGTCCGCTTCCTCGATCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCCGCTCTCTCCCCCGCCGCCCTTCACCCGTCGCCGGCACCCGCTGATCGAT CGATCGATCCA TGACGG CTC CACGT ACGTACGGCAA CCAA CANAAGACA GTACGCTGGCTGAAGTTGTCTCGCCTTCGTCTCGTAAATTAA CTTGTTTGTAGCCACGGGTTGCTA GCTGCCTAGCTAGCTGTTGTTCTTGCAGC TTAATTAATTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACCGAGTCACGGTCACGGCCAGTTGACTCGGAGCGAGAAGATTTGTAAATCTGGGT GAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA] [+] EMBL BQ909179 [ GATCCGATCGATCCACTGACGGCCTCCCACACGTAACGTACGGCAACCCAACCACAAGACACGTACGCTGGCTGAAGTTGTCTCGCCTTCGTCTCGTAAATTAACCTTGTTTGTAG CACGGGTTGCTAGGCTGCCTAGCTAGCTGTTGTTCTTGCAGCGTTAATTAATTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCCAGCGACCGAGTCACGGTCACGGCCAGTTGACTCGGAGCGAGAAGATTTGTAAATCTGGGTCGAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9502#0 CCATCTCTCCAGAGGCCTCCATCCAAAGCCGCGCAAAACGCCACCACCCACACCACGCTG 60 consensus_9502#1 ------------------------------------------------------------ consensus_9502#0 CACTCGCGACGCGAGGGACCCCGCCGGCGGCGGCGCGAGGAGGAGAAGGAGAAGGAGAGA 120 consensus_9502#1 ------------------------------------------------------------ consensus_9502#0 GAGAGAGAGAGGATGATCCTGGTGGCGATCGTGGCGGAGCTGCTGGAGGAGTACACGGCG 180 consensus_9502#1 ------------------------------------------------------------ consensus_9502#0 GCGGTGGCGCGCGCCATGGAGCTCCTGCTGTCGCGGGCGCCGCCCCGCATCTTCCCGCGC 240 consensus_9502#1 ---------------------------CTGTCGCGGGCGCCACCCCGCATCTTCTCGAGC 33 ************** ************ ** ** consensus_9502#0 CGCGTCCGCTTCCTCG----TCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCC 296 consensus_9502#1 CGCGTCCGCTTCCTCGATCGTCCTCCGGAGCCTCCCCTTCGCCTCGCCGCCGCCGTCCCC 93 **************** **************************************** consensus_9502#0 GCTCTCTCCCCCGCCACCCTTCACCGTCGCCGCCGGCACCCGCTGATCGATCGATCGATC 356 consensus_9502#1 GCTCTCTCCCCCGCCGCCCTTCACC--CGTCGCCGGCACCCGCTGATCGATCGATCGAT- 150 *************** ********* ** ***************************** consensus_9502#0 GGTCCATGACGGCTCCACGTACGTACGGCAACCAGCAAA-GACAGTACGCTGGCTGCTGA 415 consensus_9502#1 ---CCATGACGGCTCCACGTACGTACGGCAACCAACANAAGACAGTACGCTGGCTG---A 204 ******************************* ** * **************** * consensus_9502#0 AGTAGTCTCGCCTTCGAATCATGAATTAACCTGCTCGCGCGTGTGCATAGTTCAACTCGT 475 consensus_9502#1 AGTTGTCTCGCCTTCGTCTCGTAAATTAACTTGTTTG----------------------- 241 *** ************ ** * ******* ** * * consensus_9502#0 GATGTTTGTAGCAGCGTGCTAGATTACTAGCTAGTTGTTGTGTTCTTGCAGCTTAGT-AA 534 consensus_9502#1 -----TAGCCACGGGTTGCTAGCTGCCTAGCTAGCTGTTGT--TCTTGCAGCTTAATTAA 294 * * * * ****** * ******** ****** ************ * ** consensus_9502#0 TTAAT-TAATCATTTGCTTAGCTTCTGATCCTGAAAAA-GCTTGCATGTAGTTGTAGCCC 592 consensus_9502#1 TTACTCTACTCATTTGCTTAGCTTCTGATCCTGAAAAAAGCTTGCATGTAGTTGTAGCCC 354 *** * ** ***************************** ********************* consensus_9502#0 AGCGACTGAGTTACGGTCACGGGCTCACGGCCAGTTGACTCGGAGCGAGAAGATGTGTGT 652 consensus_9502#1 AGCGACCGAGTCACGGTCACGG--------CCAGTTGACTCGGAGCGAGAAGATTTGTA- 405 ****** **** ********** ************************ *** consensus_9502#0 AATCTGTGTGAGGTTTTGAATTACTTGAAGAAAATTTGGAGATCTAA 699 consensus_9502#1 AATCTGGGTGAGGGTTTGAAATACTTTTGAAGAAAAAAAAAA----- 447 ****** ****** ****** ***** * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||